Digital Commons Network^™

Small Stream Restoration In The Piedmont Of South Carolina: Comparison Of Evaluation Tools And Water Quality’S Effects On Salamanders, Camryn Lachica

All Theses

For many years, the United States Army Corps of Engineers (USACE) used the Guidelines for Preparing a Compensatory Mitigation Plan worksheets to guide pre-restoration evaluation and determine post-restoration mitigation credits in South Carolina. Recently, the USACE in South Carolina transitioned to the Stream Quantification Tool (SQT), which provides a more comprehensive assessment framework. Our first objective was to compare these assessment methodologies across different landscape types to determine what the SQT adds to mitigation calculations that were not considered in prior worksheets. We evaluated 16 streams in the Piedmont of South Carolina, with four replicates each of forested, suburban, urban, …

Evolving Adaptive Foraging Robot Swarms With Neat In Environments With Obstacles, Tameem Uz Zaman, Pigar Biteng, Qi Lu

Computer Science Faculty Publications

We apply NeuroEvolution of Augmented Topologies (NEAT) to evolve adaptive and efficient swarm foraging behaviors in unknown environments with randomly placed obstacles. By rewarding effective actions and penalizing inefficient ones using the proposed strategy P-NeatFA, the training generates efficient foraging and obstacle avoidance strategies, reducing redundancy and outperforming traditional stochastic foraging algorithms. Optimization is guided by cumulative reward-based fitness, evaluated through simulations involving three types of distributed resources. Foraging performance is assessed in terms of resource retrieval rates. We compare the performance of our proposed P-NeatFA with that of CPFA and NeatFA. Experimental results show that P-NeatFA significantly outperforms the …

Effective Transformer Networks For Undersampled Magnetic Resonance Image Reconstruction, Tahsin Rahman

Open Access Theses & Dissertations

The proliferation of data-driven tools for solving problems in every possible domain, coupled with rapid advances in computing technology, has led to an arms race of AI development and application research in industry and academia. One field of research that stands to gain immeasurably from this revolution is medical imaging. It is a critical part of modern diagnostics, and advancements in this area can directly benefit the average person by making healthcare more accessible, accurate, and affordable. Breakthroughs in mainstream image processing and computer vision have long fueled development in medical imaging, and it is now common to see cutting …

Coastal Transition Zone Development Effects On Salt Marsh Ecology, Amanda Mei Pysher

Electronic Theses and Dissertations

The coastal transition zone (CTZ) is a regional gradient linking terrestrial and marine systems, comprising of the terrestrial upland, the marsh-upland ecotone, and estuarine salt marshes. Along all US coastlines, including the South Carolina (SC) coast from Little River to Georgetown, increases in anthropogenic development of terrestrial uplands have altered the historically established vegetation, and various physical, chemical, biological, and geological gradients. Despite the CTZ's ecological importance, the trickle-down effects of terrestrial upland development on associated high marsh habitats remain understudied. Data were collected from developed (DEV) and undeveloped (UND) shorelines across three SC estuarine inlets. Multilevel modeling (MLM) was …

Migratory Patterns Of Juvenile Shortfin Makos (Isurus Oxyrinchus): Evidence Of A Nursery In The Western North Atlantic, Julia A. Crews

Electronic Theses and Dissertations

Shortfin Makos, Isurus oxyrinchus Rafinesque, 1810, are lamnids that have a global distribution in temperate and tropical oceans. Locations of critical early life history events including birthing and nursery areas are unknown or unconfirmed for most populations. The objective of this study was to identify if a nursery area for Shortfin Makos in the northern waters of the Mid-Atlantic Bight using the criteria articulated by Heupel et al. (2007). Satellite tags were used to track the movement of juveniles (<200 cm TL, n=7) up to 5 months. Tag detections (n=882) confirmed that young makos stay in continental shelf waters of the northern Mid-Atlantic Bight off Long Island through the meteorological summer (June–August) and early meteorological fall (September–October) when sea surface temperatures are 18–23°C. There was clear migratory movement from juveniles once sea surface temperatures fell below 15°C. During late fall, some young sharks moved south towards Cape Hatteras, North Carolina, while one shark moved east up to 1,800 km into the open north Atlantic Ocean into meteorological winter. These movement data of juvenile Shortfin Makos combined with multi-year catches and sightings (2018–2024) provide strong evidence for a nursery area in the northern Mid-Atlantic Bight. By identifying a nursery area for Shortfin Makos, knowledge gaps that currently exist for this vulnerable species and support effective management can be closed.

Comparison Of Nutrient Concentrations And Primary Production Indicators Across Plume Fronts, Taylor Dishon

Electronic Theses and Dissertations

Coastal buoyant plumes carry low-salinity waters containing particulate and dissolved terrestrial materials with an abundance of nutrients into the coastal ocean, including inorganic nitrogen and phosphorous. Plume fronts act as transport barriers created from the convergence of a fresher plume with an older, saltier plume or with ambient waters, leading to potential accumulation of phytoplankton and nutrients. This accumulation creates an optimal environment for primary production. The primary goals of this study were: to investigate the distribution of and potential relationships between nutrient concentrations and chlorophyll a across plume fronts of the Winyah Bay River Plume, and examine potential relationships …

A Multi-Isotope Investigation Of Mammoth Diet, Habitat, And Movement Patterns In The Central Great Plains, U.S.A., Jacob Mccloskey

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

During the Last Glacial Maximum (LGM), the Great Plains in Nebraska consisted of wooded parklands and grasslands, whereas spruce (Picea) forests, parklands, and steppe grasslands dominated east of the Missouri River. I analyzed bulk carbon (δ¹³C), oxygen (δ¹⁸O), and strontium (⁸⁷Sr/⁸⁶Sr) isotopes from tooth enamel in isolated mammoth (Mammuthus) molars to compare diet and movement patterns in two late Pleistocene assemblages: one in Nebraska (n = 24), and one in western Iowa and Missouri (n = 17). Furthermore, I identified a morphometric subset of molars as …

Study Of Ai Applications In Biomedical Data Acquisition, Communication, And Analysis: Cest Mri Acceleration And Ecg Transmissions, Adarsha Bhattarai

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This dissertation investigates the application of artificial intelligence in biomedical data acquisition, communication, and analysis to advance neurological research and to enable the early detection of cardiovascular conditions. Despite significant advances in imaging and physiological modalities, challenges persist. Imaging modalities, such as the chemical exchange saturation transfer magnetic resonance imaging (CEST MRI) technique are challenged by a prolonged data acquisition time and high operational costs. In addition, physiological modalities such as electrocardiogram (ECG) sensors face constraints in providing uninterrupted signal monitoring which is crucial for the timely detection of premature cardiac abnormalities. The primary goal of this work is to …

Evaluation Of Performance Characteristics And Groundwater Contamination Risks Associated With On-Farm Swine Carcass Disposal Via Composting And Shallow Burial With Carbon, Gustavo Castro Garcia

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This dissertation evaluates the performance of three on-farm swine carcass disposal methods: whole carcass composting (WCC), ground carcass composting (GCC), and shallow burial with carbon (SBC), focusing on biosecurity factors and groundwater contamination risks. Foreign animal diseases (FADs), such as African swine fever and classical swine fever, pose severe economic and animal well-being risks if introduced to the United States. With confirmation of an FAD, swine movement will be halted, creating an urgent need for practical, biosecure, and environmentally responsible on-farm disposal strategies for swine carcasses. Nebraska, as a leading swine-producing state, exemplifies the vulnerability of high-density livestock regions to …

Reductive And Nucleophilic Cleavage Of Peroxides And Synthesis Of Tocotrienols As Radioprotective Targets, Amber Marie Schuster

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

I. SET CLEAVAGE OF PEROXIDES: INFLUENCE OF REDUCTANT AND PEROXIDE ON THE RATE AND MODE OF ALKOXY RADICAL FORMATION

The reductive cleavage of organic peroxides to generate alkoxy radicals is frequently accomplished via single-electron transfer (SET) from a reductant. Previous reports employ either symmetrical peroxides or peroxides with predictable cleavage behavior, such as peresters. We were interested in how the structure of the peroxide and the nature of the reducing system combine to impact the rate of reaction and the selectivity for alkoxy radical formation during cleavage of unsymmetric peroxides. In this dissertation, one will find the reactions of a …

Multiscale Drivers Of Water Level Fluctuations And Nutrient Availability In Small Intermittent Reservoirs In The Us Midwest, Uchechukwu Vitus Chinatu Ogbenna

School of Natural Resources: Dissertations, Theses, and Student Research

Reservoir dynamics are often captured by fluctuations in water surface elevation, which reflect a complex interplay of hydrologic inputs, climatic conditions, land use influences, and management operations. While water level fluctuations (WLFs) in large regulated systems have been widely studied, the drivers and implications of WLFs in small reservoirs, particularly those fed by intermittent streams, remain poorly understood. Here, we examined the temporal dynamics of WLFs and their relationship with nutrient availability in nine small reservoirs in the U.S. Midwest using daily records from 1985 to 2022. We used water level classification from modified Zscore and transition matrices to assess …

Aptamer Selection And Development Of Electrochemical Aptamer-Based Sensors For Neuropeptide Y, Evelyn Adela Carreto Guevara

Department of Chemistry: Dissertations, Theses, and Student Research

In this thesis, we report the results of four aptamers obtained from an aptamer selection process called the systematic evolution of ligands by exponential enrichment (SELEX) with affinity to Neuropeptide Y (NPY). NPY is a highly abundant peptide transmitter with widespread distribution throughout the body which affects various physiological functions. These functions include energy homeostasis, appetite regulation, stress response, and anxiety regulation. Dynamic monitoring of NPY levels is crucial for better understanding behaviors in individuals with neurological disorders associated with NPY. Aptamers are synthetic oligonucleotides obtained through SELEX which have a binding affinity to a target of interest when in …

Depuration Of A Solitary Ascidian Depletes Transient Bacteria Without Altering Microbiome Alpha-Diversity, Brenna Hutchings, Susanna López-Legentil, Lauren M. Stefaniak, Marie L. Nydam, Patrick M. Erwin

Marine Science

Depuration, or the process of clearing impurities from the gut, is commonly applied to marine food products due to its efficacy in removing human pathogens from shellfish and edible ascidians. Recent studies also reported that depuration of filter-feeding animals helped reduce transient bacteria and identify resident symbionts in gut microbiome studies. Here, we examined the impact of depuration on bacteria in the branchial sac, gut, and hepatic gland of the solitary ascidian Pyura vittata. Replicates were kept in filtered seawater for 4 days prior to dissection (aquaria-depuration) and compared to samples that were immediately processed following collection (wild-no depuration) and …

Visceral, Neural, And Immunotoxicity Of Per- And Polyfluoroalkyl Substances: A Mini Review, Pietro Martano, Samira Mahdi, Tong Zhou, Yasmin Barazandegan, Rebecca Iha, Hannah Do, Joel Burken, Paul Ki-Souk Nam, Qingbo Yang, Ruipu Mu

Chemistry Faculty Research & Creative Works

Per- and polyfluoroalkyl substances (PFASs) have gained significant attention due to their widespread distribution in the environment and potential adverse health effects. While ingestion, especially through contaminated drinking water, is considered the primary route of human exposure, recent research suggests that other pathways, such as inhalation and dermal absorption, also play a significant role. This review provides a concise overview of the toxicological impacts of both legacy and emerging PFASs, such as GenX and perfluoro butane sulfonic acid (PFBS), with a particular focus on their effects on the liver, kidneys, and immune and nervous systems, based on findings from recent …

Progress Towards Uranium Isotope Ratio Measurements Directly From Cotton Swipes With The Liquid Sampling – Atmospheric Pressure Glow Discharge (Ls-Apgd) Ionization Source, Joseph V. Goodwin

All Dissertations

The liquid sampling – atmospheric pressure glow discharge (LS-APGD) ionization source is a novel microplasma ionization source capable of ionizing a diverse set of both inorganic and organic chemical species including, ionic metal constituents as well as ligated metallic species, polyaromatic hydrocarbons (PAH), halogens, proteins, and even per/poly fluorinated alkyl substances (PFAS). The ability to generate ions from diverse chemical species, known as combined atomic and molecular (CAM) ionization, is not found with traditional ionization sources. In addition, the LS-APGD is capable of coupling with mass spectrometer platforms typically reserved for “organic” mass spectrometry, such as the high-resolution Orbitrap mass …

Unsupervised Deep Learning For Video Restoration, Mary Damilola Aiyetigbo

All Dissertations

In today's digital era, visual data is vital across several domains such as medical diagnostics, scientific imaging, surveillance, and entertainment. However, video data often suffers from degradations like noise, blur, compression artifacts, and low resolution, which degrade quality and downstream usability. Video restoration aims to recover clean, high-fidelity video from such corrupted inputs. Unlike static images, video restoration must maintain temporal consistency across frames, making it a significantly more complex problem. While supervised deep learning methods have achieved state-of-the-art results, they typically require large datasets of paired noisy-clean video datasets that are scarce or impractical to obtain in real-world settings …

The Development Of High Throughput Assays For Identification And Evaluation Of Small Molecule Modulators Of The Pri-Microrna-18a—Hnrnp A1 Interaction, Emile N. Van Meter

Dissertations

Therapeutics targeting RNA is a rapidly growing field. While only 1.5% of the human genome encodes genes for protein, over 70% o=f the human genome contains the genes for noncoding RNAs that regulate protein expression and function. Expanding the paradigm of small molecule drug discovery from traditional protein targets to include RNA would broaden the therapeutic landscape and provide new methods to modulate previously undruggable targets. miRNAs (miRs) have been found to be aberrantly expressed in many disease states, including neurodegenerative diseases and cancers making them promising therapeutic targets. The production of functional, mature miRs requires multiple proteins in a …

A Value Sensitive Design Approach To Reimagining Parental Control Apps, Prakriti Dumaru

All Graduate Theses and Dissertations, Fall 2023 to Present

Parental control apps are often used by families to regulate children's device usage and keep them safe online. However, existing tools focus on monitoring and restricting children, which can lead to tension and mistrust within families. This research takes a new approach by exploring how parental control apps can be redesigned to support positive family values, like encouraging open communication between parents and children and helping children self-regulate their behaviors. Through four in-depth studies, this dissertation looks at how these values play out in different real-life situations. It includes families with children on the autism spectrum, divorced households where parents …

Exploring Biotic And Abiotic Drivers Of Ecosystem Properties: The Influence Of Waterbirds And Photodegradation On Wetland Ecosystems, Lindsay Miller

All Graduate Theses and Dissertations, Fall 2023 to Present

Wetlands provide a wide range of valuable ecosystem services: these are benefits from the environment that support human well-being, such as water filtration, fish and bird habitat, and shoreline protection. Despite their importance, wetlands are among the most threatened ecosystems, facing increasing pressure from natural and human activities. To better predict the future of wetlands and guide effective management and restoration practices, we need to understand the various forces shaping their ecological properties. In this thesis, we examined the influence of two forces: waterbirds and photodegradation (the process by which sunlight breaks down plant material). To explore each of these …

Impacts Of 4r Nitrogen Management And Water Optimization On Soil Health, Kamaldeep Kamaldeep

All Graduate Theses and Dissertations, Fall 2023 to Present

Farmers in Utah and Idaho are facing growing challenges due to high fertilizer costs, limited irrigation water, and pressure to improve long-term soil health. To better understand current practices and grower attitudes, a survey was conducted in 2020 targeting 5,000 producers of small grains, corn, and potatoes. Although the response rate was low, 146 growers representing over 25,000 hectares of cropland participated. Survey results showed that most growers are open to improving nitrogen and irrigation practices and care about their soil health, even if not all are fully using 4R or precision agriculture methods.

This thesis includes two field studies …

Setting Salinity Water-Quality Standards Protective Of Aquatic Life: Insights From Analyses Of The Effects Of Salinity On Stream Insects, Katlyn M. Gardner

All Graduate Theses and Dissertations, Fall 2023 to Present

Freshwater ecosystems are becoming saltier due to human activities like agriculture, urbanization, and resource extraction. This change in salinity is important because we know very little of how stream salinity affects aquatic insects at natural concentrations, much less at elevated concentrations. Increases in salinity may harm aquatic macroinvertebrates, which play important roles in stream food webs and are widely used as indicators of ecosystem health. Understanding how salinity affects aquatic insect growth, survival, and distribution is critical for developing effective criteria protective of aquatic life, but existing methods often rely on field surveys where multiple environmental factors covary, making it …

Unveiling Insights From Complexity: Advanced Computational Techniques For High-Dimensional Medical Data, Devin P. Eddington

All Graduate Theses and Dissertations, Fall 2023 to Present

Healthcare generates vast amounts of data daily, from genetic profiles to hospital records, but much of it remains untapped due to its complexity. This dissertation develops new computational tools to unlock this data’s potential, aiming to improve patient care and medical research. Five projects tackle different challenges: Project 1 creates Deep MAGIC, a method to fill in missing genetic and image data accurately, vital for understanding diseases like cancer. Project 2 analyzes how the COVID-19 pandemic disrupted surgeries, finding a 27% drop and temporary complication rises in 2020, guiding future crisis planning. Projects 3 and 4 study kidney disease trials, …

Soil Carbon Storage And Its Relation To Abiotic And Biotic Factors In The Boise Foothills, Richie William Holder

Boise State University Theses and Dissertations

Terrestrial soil sequesters a significant amount of carbon (C), and changes to this pool can impact atmospheric CO2 concentrations and climate change. Thus, it is crucial to understand the drivers of the size of this pool. Changes in plant community composition in semi-arid ecosystems can impact soil C storage. However, little is known about the impact of plant functional type on the quantity and distribution of soil C on a landscape scale relevant to ecosystem management. I conducted a study in the City of Boise’s Open Space Reserves located north of Boise, Idaho to evaluate how plant functional type affects …

Geochemical And Stratigraphic Characterization Of The Morrison Formation And Cedar Mountain Formation Contact In The Island Park Quadrangle, Uintah County, Utah, Emily Mcdermott

All Graduate Theses and Dissertations, Fall 2023 to Present

The Upper Jurassic Morrison Formation and Lower Cretaceous Cedar Mountain Formation are among the richest sources of dinosaur fossils. Despite a 24-million-year gap in time (the Jurassic–Cretaceous unconformity), these formations are difficult to distinguish due to their similar rock types and colors. In Utah's Island Park quadrangle (IPQ), these formations are not separated on existing geological maps. This study focuses on identifying and understanding the formational boundary between them using field observations, stable isotope analysis, clay mineralogy, and chemical techniques such as X-ray diffraction (XRD) and X-ray fluorescence (XRF).

Unlike other areas where a conglomerate layer marks the boundary, the …

Graph-Based Machine Learning: Higher-Order Interactions, Guided Generation, And Knowledge-Graph Tools, Thomas J. Kerby

All Graduate Theses and Dissertations, Fall 2023 to Present

This dissertation brings the power of graph thinking to three key challenges in modern AI, making complex data more transparent, generative design more controllable, and scholarly exploration more intuitive. First, we introduce Local CorEx, a new machine learning technique that uncovers hidden relationships among variables, making it easier to understand complex datasets without heavy computation. Next, we show how to guide the creation of new molecules by viewing the generation process itself as a walk through a "state graph," letting researchers steer outcomes toward desired chemical properties—without any extra model training. Finally, we deliver an open-source toolkit that builds interactive …

Risk Perceptions And Water Governance: Experiences Of Irrigation Companies In The Great Salt Lake Basin Of Northern Utah, United States, Bailey M. Holdaway

All Graduate Theses and Dissertations, Fall 2023 to Present

Irrigation companies are important water management entities in the Western US. However, these companies often face barriers when managing water. Particularly as the state of Utah grows and water resources are drying, there is much finger pointing at those in irrigation and agriculture for better water management. However, pointing fingers without the participation of these companies often does not lead to effective water management outcomes. Therefore, it is important to understand the role of these irrigation companies, and particularly how they are approaching water management.

I set out to understand the role of these irrigation companies, specifically in the Great …

Evaluating The Effects Of 3d User Interactions And Virtual Displays On Human Cognition And Perception For Immersive Analytics, Dongyun Han

All Graduate Theses and Dissertations, Fall 2023 to Present

This research investigates how virtual reality (VR) can be utilized effectively for users to explore data. Traditional data analysis typically takes place on flat, two-dimensional computer screens. In contrast, immersive technologies like VR offer a three-dimensional environment where users can engage with data more naturally and intuitively. Such immersive experiences have the potential to improve comprehension, memory, and insight during data analysis tasks. Despite this potential, several challenges remain in making immersive analytics practical and effective. Key questions include which types of 3D interaction techniques are most helpful and how accurately people perceive visual information in immersive environments. To address …

Enabling Sustainability Transitions For Great Salt Lake: Framing Of Public Opinion, Boundary Work, And Policy, Anna Mcentire

All Graduate Theses and Dissertations, Fall 2023 to Present

This dissertation explores how people think about, talk about, and take action to save Great Salt Lake, which reached historic low levels in 2021. Using surveys, public records, and legislative documents primarily from 2022 to 2024, the research examines public opinions, collaborative efforts, and policy changes related to the lake. The first chapter looks at what people value about the lake and what actions they want to see taken. It finds that people are very concerned and want significant efforts to stop the lake's decline. The second chapter investigates how different groups work together publicly to negotiate new understandings, create …

Aquatic Habitat Representation For Robust Water Resources Management And Fish Conservation Decision-Making, Gregory C. Goodrum

All Graduate Theses and Dissertations, Fall 2023 to Present

We rely on rivers to provide water supply, flood control, and hydroelectricity for people and to sustain aquatic ecosystems. The development of dams and reservoirs to provide water for people did not consider environmental impacts to rivers, leading to widespread decline of freshwater species and habitat. Improving environmental outcomes of water management is needed to protect and restore aquatic ecosystems. However, rivers are complex and variable, making them difficult to represent as objectives for water management. This dissertation explores approaches to improve aquatic habitat representation and environmental objectives for water resources management and river conservation and restoration.

Chapter 2 uses …

Groundwater-Dependent Ecosystems In Southeastern Utah: An Integrated Analysis Of Hydrology, Ecology, And Landscape Change, Colten Lay

All Graduate Reports and Creative Projects, Fall 2023 to Present

In Southeastern Utah, springs play a critical role in sustaining groundwater-dependent ecosystems (GDEs) in a semi-arid environment. However, they remain understudied and face growing threats from climate change, land use modifications, and hydrologic alterations. This study addresses knowledge gaps in spring occurrence, hydrologic function, and ecological condition by integrating field surveys, remote sensing, and geospatial analysis across multiple spatial scales. It provides a comprehensive assessment of spring hydrology, water quality, and ecological conditions using field surveys, remote sensing, and GIS analysis to establish a foundational baseline of GDE resources in the region. I applied a multi-scale monitoring approach across the …