Digital Commons Network^™

Synthesis Of Phenyl-Substituted Zinc Dipyrrin Photosensitizer For Carbon Dioxide Reduction, Stephen Ankomah

Electronic Theses and Dissertations

The release of CO₂ from fossil fuel combustion drives the need for its conversion into more sustainable options like CO and CH₄ via photocatalytic reduction. This process requires a catalyst, sensitizer, and electron donor. Zinc dipyrrin-based complexes are promising photosensitizers, offering an alternative to expensive, rare-metal-based systems. Most first-row transition metal dipyrrin compounds have short excited-state lifetimes due to rapid nonradiative decay, but Zn(II) dipyrrin complexes stand out. With a d¹⁰ configuration, they lack deactivating ligand field states and can access long-lived triplet states through a charge-separated intermediate. A phenyl-substituted Zn(II) dipyrrin complex was synthesized and studied using NMR to …

Divergent Responses Of Branched-Chain And Straight-Chain Lipid Membranes To Butanol Stress Revealed By All-Atom Molecular Dynamics Simulations, Joshua Olaf Aggrey

Electronic Theses and Dissertations

Membrane integrity under chemical stress is critical to cellular survival and industrial microbial bioproduction, yet the molecular basis of bilayer resilience remains poorly understood. Using all-atom molecular dynamics simulation, we compare the effect of increasing concentrations of 1‑butanol on membranes composed of straight-chain (1,2-dipalmitoyl-sn-glycero-3-phosphocholine, DPPC) and branched-chain (1-anteiso-palmitoyl-2-palmitoyl-sn-glycero-3-phosphocholine, APPC) lipids, which differ in the point of attachment of a single methyl group. In the absence of butanol, both membranes exhibit well-ordered architectures consistent with experimental benchmarks; however, under increasing solvent stress, their behaviors diverge markedly. DPPC membranes display gradual thinning, modest area per lipid …

Cosmetic Surgery And Physiological Disorder: You Should Talk To Someone About Your Unwinding Anxiety, Mona Muzammil, Washain Muzammil

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Body dysmorphic disorder is a mental health condition in which you can't stop thinking about one or more perceived defects or flaws in your appearance — a flaw that appears minor or can't be seen by others. But you may feel so embarrassed, ashamed and anxious that you may avoid many social situations.

When you have body dysmorphic disorder, you intensely focus on your appearance and body image, repeatedly checking the mirror, grooming or seeking reassurance, sometimes for many hours each day. Your perceived flaw and the repetitive behaviors cause you significant distress and impact your ability to function in …

Detection Of Phase-Binning And Interpolation Artifacts In 4-Dimensional Computed Tomography Imaging Using Deep Learning And Rule-Based Approaches, Jorge Cisneros, Nathan H. Feldt, Yevgeniy Vinogradskiy, Richard Castillo, Edward Castillo

Department of Radiation Oncology Faculty Papers

BACKGROUND: Four-dimensional computed tomography (4DCT) imaging is a crucial component to lung cancer radiotherapy planning and enables CT-ventilation-based functional avoidance planning to mitigate radiation toxicity. However, 4DCT scans are frequently impaired by acquisition artifacts that corrupt downstream analyses that depend on lung segmentation and deformable image registration, such as CT-ventilation and dose accumulation.

PURPOSE: This study develops 3D deep learning models to identify phase-binning artifacts at the voxel level and a heuristic, rule-based method to identify interpolation slices within 4DCT images.

METHODS: We introduce a generator that systematically inserts synthetic phase-binning and interpolation artifacts into any artifact-free breathing phase obtained …

The Transition Zone Hypothesis On Biodiversity Of The Indian River Lagoon System, Florida, Richard L. Turner

Ocean Engineering and Marine Sciences Faculty Publications

The Indian River Lagoon System (IRL) is regarded as having a high level of biodiversity. The level of biodiversity is often attributed in part to the 2-degree latitudinal span (251 km) of the IRL and to its position in a transitional zone between tropical and temperate biotic provinces. This hypothesis was tested for submerged aquatic vegetation (SAV) based on a recent treatise (Littler, Littler, and Hanisak, 2008). Five of seven species of seagrass are tropical, and two have either a broad or very narrow latitudinal distribution; the transition-zone hypothesis does not hold for seagrasses. Most macroalgae (131 spp.) are tropical/subtropical; …

Effect Of Planting Date, Insecticide Efficacy, And Hail Injury On Soybean Gall Midge (Resseliella Maxima Gagné) Infestation In Soybean, Natasha Hiromi Umezu

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Resseliella maxima Gagné (Diptera: Cecidomyiidae) is a recently described and economically significant pest of soybean (Glycine max (L.) Merr.) in the Midwestern United States. Since its identification in 2019, this species has become widespread and is now associated with substantial yield losses in parts of the region. Prior to its formal description, orange larvae were observed in soybean associated with plants damaged by hail, suggesting that plant injury may influence infestation. Given the pest’s economic importance, understanding the role of hail injury and developing effective, integrated management strategies are critical for mitigating its impact.

Field studies were conducted to …

Opportunities For Expansion Of Push-Pull Technology As An Agroecological And Sustainable Intensification Approach In Africa, Gudeta W. Sileshi, Shem Kuyah, Meredith C. Schuman, Frank Chidawanyika, Beatrice W. Muriithi, Charles A.O. Midega, Adewole Olagoke, Michael H. Otim, Paramu L. Mafongoya, Emily A. Martin

All Peer-Reviewed Publications

The push-pull technology (PPT) has often been presented as a management strategy for stemborers and witchweed. However, its value as an agronomic practice and an agroecological approach remains largely underappreciated. This review aims to appraise the PPT used in eastern Africa, synthesize evidence for its ecological and economic benefits, and identify barriers to its adoption and opportunities for its expansion to other crops and farming systems in sub-Saharan Africa.

The Dissemination Potential Of Microsporidia Mb In Anopheles Arabiensis Mosquitoes Is Modulated By Temperature, Fidel Gabriel Otieno, Priscille Barreaux, Affognon Steeven Belvinos, Edward Edmond Makhulu, Thomas Ogao Onchuru, Anne Wambui Wairimu, Stancy Mandere Omboye, Cynthia Nyambura King’Ori, Bonoukpoè Mawuko Sokame, Anthony Kebira Nyamache, Jeremy Keith Herren

All Peer-Reviewed Publications

Microsporidia MB, a vertically transmitted endosymbiont of Anopheles mosquitoes, shows strong potential as a malaria control agent due to its ability to inhibit Plasmodium development within the mosquito host. To support its deployment in malaria transmission reduction strategies, it is critical to understand how environmental factors, particularly temperature, influence its infection dynamics. In this study, we investigated the impact of four temperature regimes (22 °C, 27 °C, 32 °C, and 37 °C) on Microsporidia MB prevalence and infection intensity by rearing mosquito larvae under controlled laboratory conditions. Our results demonstrate that elevated temperatures, especially 32 °C, significantly enhance both larval …

Understanding Outer Solar System Ice Composition Through Impact Processes: Simulations And Hydrates, Jill Rebecca Mcdonald

Graduate Theses and Dissertations

This work concerns solar system ices, particularly water ice and clathrate hydrates. Water ice is abundant as a mineral in the outer parts of the solar system, providing source material for the formation of clathrates. We explored constituents through a combination of numerical modeling and laboratory experiments. Understanding the differences and similarities between these materials can shed light on planetary habitability, composition, and evolution. Chapter one contains relevant background information. This chapter introduces the ices that will be studied and gives insight into the locations of interest within our solar system. It also explains the mechanics of impact cratering processes …

Ring-Opening And Monofunctionalization Study On Spiro Cyclic Aminals And N, O-Acetals System Via Nitrogen-Centered Radical Intermediates, Chujun Zhou

Graduate Theses and Dissertations

The nitrogen-centered radical has been drawing increasing attention among researchers. Radical polarity is one of the key factors in studying nitrogen-centered radicals’ reactivity, and the functional groups attached to the nitrogen atom are of vital importance. Among different types of nitrogen-centered radicals, aminium radical and metal aminium radical are electrophilic due to the positive charge on the intermediate. The sulfonamide radical, amidyl radical, and cyanide amine radical are also electrophilic since the nitrogen is adjacent to electron electron-withdrawing group. The neutral amino radical, iminyl radical, masked nitrogen radical are nucleophilic because of the electron-donating groups. After classifying the nitrogen-centered radical, …

Benthic Infaunal Responses To Shoreline Restoration, Jessica Lauren Cline

Theses and Dissertations

In the age of increasing urban coastal sprawl, natural shorelines are being replaced by hard armoring structures, which result in the loss of valuable ecosystem services. Hybrid living shorelines, areas that include limited and less intensive armoring strategies paired with the integration of plants and other natural materials, present an opportunity to marry the need for more aggressive stabilization with the continued preservation of ecosystem functions and biological communities. This project uses benthic infauna to evaluate the success of a living shoreline installation in Palm Bay, Florida. The deployment features experimental treatments of breakwaters and red mangroves to explore how …

Estimation Of 3d Facial Dynamics With Nonlinear Filters For Position Tracking, Thoa Thieu, Roderick Melnik

School of Mathematical & Statistical Sciences Faculty Publications

This study presents a comparative evaluation of three nonlinear state estimation filters, the Extended Kalman Filter (EKF), Unscented Kalman Filter (UKF), and Particle Filter (PF), for the task of 3D facial landmark tracking. Using a publicly available dataset, we assess each filter's performance under both deterministic (noise-free) and stochastic (noisy) conditions. Metrics such as mean squared error (MSE), convergence rates of state and covariance estimates, and consistency over time are used to quantify tracking performance. Results show that the EKF consistently outperforms the UKF and PF, achieving faster convergence and lower estimation error, particularly in scenarios characterized by mild nonlinearity. …

Genscore: Agent-Based Short-Answer Question Generation And Scoring In Software Engineering Courses, Nguyen Binh Duong Ta, Lwin Khin Shar

Research Collection School Of Computing and Information Systems

Short-answer questions are commonly used in educational assessments, as they are often viewed as a more effective way than multiple-choice questions to determine whether students have achieved the intended learning outcomes. However, manually creating appropriate questions targeting different cognitive levels such as those defined by the Bloom’s Taxonomy, and grading text answers from students are not trivial tasks for instructors. Existing work on auto-question generation and scoring in computing education typically targets coding-based questions. However, in software engineering courses, assessments can extend beyond coding to understanding of processes, DevOps methodologies, system design, etc. This work aims to address the dual …

Accelerating Relationship Discovery In Chronic Lower Back Pain Through Knowledge Graph And Ontology Enhanced Large Language Models, Damon Lin

Master's Theses

Chronic lower back pain (cLBP) is a widespread public health burden linked to anxiety, depression, and opioid addiction. Interventions aimed at treating cLBP have shown minimal improvements in pain outcomes, leading researchers to reexamine our understanding of cLBP through constructing a causal model. However, constructing causal models through Randomized Controlled Trials are often unfeasible, and relying on domain expertise requires extensive and time-consuming research, posing a serious bottleneck for designing effective treatments. To accelerate this process, we apply Knowledge Graphs, Ontologies, and Large Language Models (LLMs) to aid researchers in determining possible causal relationships. First, we demonstrate how LLMs can …

Generalized Detection Of Animal Behavior Using Accelerometers, Alexander J. Arrieta

Master's Theses

Animal mounted sensors are becoming increasingly used to passively monitor both domestic and wild animals. Advances in lightweight accelerometer and GPS technology have allowed many animals to be fitted with high accuracy sensors for extended periods of time. This leads to new opportunities to study animal behavior without direct observation. However, interpreting the raw data is difficult due to the high volume and missing context of the information. Machine learning techniques excel at extracting information from raw data streams and are excellent candidates for processing the sensor data. However, due to large variance in how different animals execute the same …

Terrestrial And Lacustrine Organic Matter Biomolecular Transformations Via Thermal Maturation And Oxidative Degradation, Louis Connor Bondurant

Chemistry & Biochemistry Theses & Dissertations

The most abundant source of fossil fuel-forming kerogen on Earth is classified as Type II kerogen, believed to originate from marine biomass. However, a significant amount of lacustrine and terrigenous carbon is transported to the ocean through fluvial discharge. Less than half of the exported organic carbon is observed in coastal regions and the open ocean. There is a great need for an explanation of what is happening to this organic carbon during transport and deposition. Traditionally, the marine organic matter in coastal regions accumulates to eventually be buried and transformed into petroleum over millions of years due to its …

Human Identification And Action Recognition Using Small Data And Deep Domain Adaptation, Alexander M. Glandon

Electrical & Computer Engineering Theses & Dissertations

Human identification and human action recognition problems are two important research areas for real-world security and surveillance applications. In both human identification and action recognition, it is necessary to operate by collecting small datasets in the field, possibly in a short time window of observation. This dissertation studies and develops computational modeling and high-performance machine learning (ML) and deep learning (DL) models for human identification and human action recognition using small amounts of data. These methods and computational models may be useful for different security and surveillance applications.

This dissertation on human recognition develops a ML computational model to estimate …

Robustness Of Network Inference Algorithms Under Network Class Misspecification, Roberto Ceja

Electronic Theses, Projects, and Dissertations

Inferring phylogenies in the presence of hybridization remains a difficult problem. As a result, many current methods for reconstructing phylogenetic networks are restricted to a simple class of networks known as level-1. This restriction arises from theoretical considerations rather than empirical evidence, with real data possibly arising from complex networks. In this work, we evaluate the robustness of two level-1 network inference methods, SNaQ and NANUQ+, through a simulation study, when the input data originates from a more complex network. Specifically, we investigate whether these methods can accurately recover important features of the true species network, such as the circular …

The Impact Of Transmission Thresholds Across Multiple Scales On The Spread Of Chronic Wasting Disease In Wisconsin, Jen Mcclure

All Graduate Theses and Dissertations, Fall 2023 to Present

Wildlife diseases can be difficult to control once they are established. This is especially true when they spread through contact with infectious material left in the environment. One such disease is chronic wasting disease (CWD), a fatal illness affecting deer and related species in North America and other regions. CWD is caused by prions, misfolded proteins that can remain infectious for years after shedding by infected hosts.

Recent research shows that CWD infection does not always follow from the gradual accumulation of prions through small contact events. Rather, an individual may need to encounter a certain prion dose all at …

Implications Of The Attenuated Allee Effect On Population Dynamics, Dana Strong

All Graduate Theses and Dissertations, Fall 2023 to Present

The Allee effect is an ecological phenomenon characterized by a per capita growth rate that increases as the population size increases in the context of low population density. The Allee effect can lead to rapid extinction events. Consequently, ecologists can attempt to control the strength of the Allee effect to help increase the population (in the case of endangered species) or decrease the population (in the case of parasites or pests).

This research aimed to study not the strength of the Allee effect, but the intensity of the Allee effect, or how rapidly cooperation between individuals causes the per capita …

Social Media Mining For Extracting The Experience Of Neurodivergent Individuals On Twitter (X) And Reddit, Kartik Thakkar

All Graduate Theses and Dissertations, Fall 2023 to Present

Neurodiversity refers to the natural neurological variations in the human brain such as autism spectrum disorder (ASD), attention deficit hyperactivity disorder (ADHD), dyslexia, dyspraxia, Tourette syndrome and other neurological disorders. it’s estimated that around 15% to 20% of the world’s population is neurodivergent. This means a significant portion of people experience neurological differences in how they think, learn, and interact with the world.

Social Media has become an important space for neurodivergent individuals to share their experiences, build communities, and seek support. This thesis explores how the online venues like X (Twitter) and Reddit offer themselves as digital spaces where …

Integrating Manager Perspectives Into The Evaluation Of Wetland Revegetation Strategies, Loren F. Taylor

All Graduate Theses and Dissertations, Fall 2023 to Present

Ecological restoration is the process of assisting the recovery of an ecosystem that has been degraded and is dependent on complex and context-specific decisions. The decision-making process influencing restoration is rarely examined alongside ecological processes. There is a need for research that incorporates the social, economic, institutional, and logistical considerations that shape real-world practices, as well as ecological processes. Decisions made by restoration practitioners and land managers (hereon “manager”) are challenged by the lack of information shared regarding the practical constraints (e.g., cost, labor, specialized equipment) they face. Revegetation, particularly in wetlands, poses challenges due to site conditions and degradation …

Interactions Between Black, Brown, Blue And Green Carbon From Terrestrial To Marine Ecosystems: A Critical Review, Allison White, Richard Kline, Md. Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Black and brown carbon are byproducts of the incomplete combustion of biomass or fossil fuels. These light-absorbing aerosols influence climate by altering the radiative balance through the absorption and scattering of sunlight, exacerbating global climate change. Their subsequent deposition on terrestrial and marine environments affects surface albedo, snow and ice melt, and biogeochemical processes, leading to further environmental consequences. In contrast, green and blue carbon refer to carbon stored in terrestrial vegetation and marine ecosystems, respectively. These ecosystems play a crucial role in mitigating climate change by sequestering atmospheric carbon; however, they are increasingly threatened by climatic disturbances, anthropogenic activities, …

Impacts Of Dredging And Restoration On Sedimentary Carbon Stocks In Seagrass Meadows Of Pari Island, Indonesia, Yusmiana P. Rahayu, Gary A. Kendrick, Pere Masqué, Wawan Kiswara, Hadiwijaya L. Salim, Ali A. Lubis, Mathew A. Vanderklift

Research outputs 2022 to 2026

The effects of dredging and restoration on carbon sequestration in seagrass sediments is not well understood. Our knowledge is derived from few studies conducted in areas affected by dredging or restoration, the majority of which are from temperate regions. There is limited information available for tropical regions, where seagrass sediments can differ greatly in species composition, geomorphology, and hydrodynamic conditions. This study aims to assess the effects of dredging and seagrass restoration on sediment organic carbon concentrations and stocks at Pari Island, Indonesia. The results indicated that sediment organic carbon concentrations (%Corg) were higher in persistent seagrass meadows than in …

Sediment Burial Negatively Impacts The Growth Of Seagrass Posidonia Sinuosa, Chanelle Webster, Nicole Said, Natasha Dunham, Simone Strydom, Kathryn Mcmahon

Research outputs 2022 to 2026

Burial disturbances affect foundation plant species in marine ecosystems. Deposition of dredge spoil can bury seagrass meadows yet we have limited threshold information to predict the trajectory of impact from burial or possible recovery. To investigate the response to burial by dredge spoil, established seagrass ramets of Posidonia sinuosa were collected from a population in Western Australia and exposed to cutter suction dredge spoil sediment. Plant responses were measured during a burial phase after 2, 4 and 8 weeks to assess the influence of duration to burial depths (0, 1, 4, 8 and 16 cm). Sediments were then removed, and …

Leptinotarsa Texana Schaeffer And Gargaphia Arizonica Drake & Carvalho As Potential Biocontrol Agents For The Noxious Weed Solanum Elaeagnifolium Cav, Samikshya Subedi, Stephanie L. Kasper, Alexis Racelis, Greg Lefoe, Rupesh R. Kariyat

School of Earth, Environmental, & Marine Sciences Faculty Publications

Silverleaf nightshade (Solanum elaeagnifolium Cav.; SLN) is a perennial forb native to the southern United States, Mexico and South America that has become a serious agricultural weed across the world. Biological control has emerged as a significant alternative for the management of (SLN) due to the challenges and high costs associated with chemical and mechanical controls. In this study, we used a combination of field and laboratory studies to (1) explore the fundamental and realized host ranges of two North American insects, Leptinotarsa texana Schaeffer and Gargaphia arizonica Drake & Carvalho and (2) assess their suitability as potential biological …

Machine Learning Applications: Cell Tracking And Nonparametric Estimation Of Non-Smooth Divergences, Mina Mahbub Hossain

All Graduate Theses and Dissertations, Fall 2023 to Present

This thesis brings together two important research directions: how to compare different sets of data more accurately, and how to better understand how brain cancer cells move and change shape.

In the first part, we look at a problem in statistics: measuring how different two data sources are from each other. Traditional methods often make strong assumptions, which may not always hold in real situations. Our approach avoids those assumptions by using an ensemble method, a way of combining many weak estimators into one stronger result. This makes the method more flexible and reliable, especially when dealing with complex or …

Leveraging Disparate Wildland Fire Datasets To Address Longstanding Fire Management Questions, Kendra Fallon

Boise State University Theses and Dissertations

While wildfire season is perceived as occurring in the warm months, and expanding, wildfire management is a year-long process. Juxtaposed to wildfire seasons are the reactive seasons of mitigating for post-fire effects, namely first-order effects of potential hydrological impacts in burn footprints, and the proactive implementation of fuels treatments to modify fire behavior to lessen the reactive workload. In this dissertation, I focus on answering lingering questions that are critical to the management of the shoulder seasons of wildfire season. To assist in resource allocation and identification of post-hydrological risks, I present a model identifying the major drivers of soil …

Deep Reinforcement Learning For Adaptive Mesh Refinement: A Training Parameter Study, Antone Chacartegui

Boise State University Theses and Dissertations

Adaptive mesh refinement (AMR) enables efficient solution of partial differential equations by dynamically allocating computational resources to regions requiring higher resolution. It has been demonstrated that deep reinforcement learning agents could learn effective mesh adaptation policies. However, practical deployment requires a systematic understanding of how training parameters affect performance across diverse computational scenarios.

This thesis presents a parameter optimization study analyzing the relationship between deep reinforcement learning for adaptive mesh refinement (DRL-AMR) training parameters and model performance. We implement an independent DRL-AMR system with a discontinuous Galerkin solver and actor-critic (A2C) algorithm for one-dimensional linear advection. The study explores four …

A Comparative Study Of Novel Methods For Variances, Taoreed Muritala

Boise State University Theses and Dissertations

Understanding variability is fundamental to knowledge advancement across various disciplines, including manufacturing, clinical research, biology and genetics. Population variances play a crucial role in processes such as quality control, treatment evaluation and the interpretation of biological mechanisms. However, statistical procedures for comparing variances across multiple populations remain less developed than those for comparing means. Classical omnibus tests, such as Bartlett's and Levene's, can detect overall variance heterogeneity but fail to identify which populations differ, thereby limiting their usefulness in multi-population analyses and increasing the risk of inflated family-wise error rates through repeated testing.

This thesis develops and evaluates three multiple …