Digital Commons Network^™

Compensatory Response Of Fathead Minnow Larvae Following A Pulsed In-Situ Exposure To A Seasonal Agricultural Runoff Event, Jonathan M. Ali, John Sangster, Daniel D. Snow, Shannon L. Bartelt-Hunt, Alan S. Kolok

Nebraska Water Center: Faculty Publications

Agriculturally-dominated waterways such as those found throughout the Midwestern United States often experience seasonal pulses of agrichemical contaminants which pose a potential hazard to aquatic organisms at varying life stages. The objective of this study was to characterize the developmental plasticity of fathead minnow larvae in a natural environment subject to a seasonal episodic perturbation in the form of a complex mixture of agricultural stressors. Fathead minnow larvae were maintained at the Elkhorn River Research Station for a 28-d in situ exposure to an agrichemical pulse event.Minnow larvae were sampled after 14 and 28 days to characterize developmental plasticity through …

More Than Food: An Analysis Of Multidimensional Relationships In Our Food System, Jessica Erin Newnan

Honors Theses and Capstones

Food is an integral part of everyday life for human beings, thus meriting particular attention from research and education. Looking further in depth at the factors that influence food, it becomes apparent that this is a complex topic that is related to several systems within the constructs of society. Here, the food system is approached with the understanding that several systems influence food consumption options and decisions including the agricultural, economic, education, energy, health, and political systems. To identify the relationships more closely, a three-dimensional model was built to represent the food system and depict several key factors, their relationships, …

Taking A Byte Out Of Corruption: A Data Analytic Framework For Cities To Fight Fraud, Cut Costs, And Promote Integrity, Center For The Advancement Of Public Integrity

Center for the Advancement of Public Integrity (Inactive)

In recent years, the emerging science of data analytics has equipped law enforcement agencies and urban policymakers with game-changing tools. Many leaders and thinkers in the public integrity community believe such innovations could prove equally transformational for the fight against public corruption. However, corruption control presents unique challenges that must be addressed before city watchdog agencies can harness the power of big data. City governments need to improve data collection and management practices and develop new models to leverage available data to better monitor corruption risks.

To bridge this gap and pave the way for a potential data breakthrough in …

The Importance Of Traditional Ecological Knowledge In Agroecological Systems In Peru, Christina R. Saylor, Kamal Alsharif, Hannah Torres

School of Geosciences Faculty and Staff Publications

This study argues that a critical element in the success of an ecosystem service (ES) approach at any level is the higher qualitative valuation of local traditional ecological knowledge (TEK). As such, the objectives of this research were to illustrate the role of TEK in agroecological systems in Peru and to develop recommendations about this type of knowledge acquisition. The data were gathered using interviews and focus groups with subsistence farmers along with key informant interviews to elicit TEK at local and regional scales in five provinces in the Lake Titicaca region of Puno, Peru. Qualitative analysis revealed dominant themes …

Rapid Adaptive Responses To Climate Change In Corals, Gergely Torda, Jennifer M. Donelson, Manuel Aranda, Daniel J. Barshis, Line Bay, Michael L. Berumen, David G. Bourne, Neal Cantin, Sylvain Foret, Mikhail Matz

Biological Sciences Faculty Publications

Pivotal to projecting the fate of coral reefs is the capacity of reef-building corals to acclimatize and adapt to climate change. Transgenerational plasticity may enable some marine organisms to acclimatize over several generations and it has been hypothesized that epigenetic processes and microbial associations might facilitate adaptive responses. However, current evidence is equivocal and understanding of the underlying processes is limited. Here, we discuss prospects for observing transgenerational plasticity in corals and the mechanisms that could enable adaptive plasticity in the coral holobiont, including the potential role of epigenetics and coral-associated microbes. Well-designed and strictly controlled experiments are needed to …

A Spatial Analysis Of Climate Change Effects On Maize Productivity In Kenya, Dan Wanyama

Theses

Climate change has intensified the risk of catastrophic natural disasters all over the world. Though impacts of the change are global, developing countries are more at risk. Although agriculture remains the backbone of Kenya’s economy, the sector’s dependence on natural resources increases its vulnerability to the aggravating impacts of climate change and variability. Climate system variations that impact staple food crops like maize (Zea mays) ultimately threaten the food security of the nation. This study examined environmental factors affecting maize productivity through regression analysis. A GIS suitability model for maize was also developed to identify Kenya’s different levels of suitability …

Using Low-Coherence Interferometry To Monitor Cell Invasion In An In-Vitro Model System, Behnaz Davoudi Nasab

Honors Undergraduate Theses

In an optically random system, such as naturally occurring and man-made media, light undergoes pronounced multiple scattering. This phenomenon has shown a remarkable potential in characterizing complex materials. In this regime, scattering occurs from each individual center of the scattering and independent scattering events lead to multiple light scattering. This phenomenon is often described as a random walk of photons and can be modeled in terms of a diffusion equation based on the radiative transfer theory. In this thesis, we used optical path-length spectroscopy (OPS), which is an experimental method to obtain the path-length probability density of the propagating light …

An Exploratory Statistical Method For Finding Interactions In A Large Dataset With An Application Toward Periodontal Diseases, Joshua Lambert

Theses and Dissertations--Epidemiology and Biostatistics

It is estimated that Periodontal Diseases effects up to 90% of the adult population. Given the complexity of the host environment, many factors contribute to expression of the disease. Age, Gender, Socioeconomic Status, Smoking Status, and Race/Ethnicity are all known risk factors, as well as a handful of known comorbidities. Certain vitamins and minerals have been shown to be protective for the disease, while some toxins and chemicals have been associated with an increased prevalence. The role of toxins, chemicals, vitamins, and minerals in relation to disease is believed to be complex and potentially modified by known risk factors. A …

Survival And Cause-Specific Mortality Of White-Tailed Deer (Odocoileus Virginianus) Neonates In A Southeastern Kentucky Population, Joseph R. Mcdermott

Theses and Dissertations--Forestry and Natural Resources

Maintaining desired numbers of wildlife species requires an understanding of species-specific population dynamics. For ungulate species such as the white-tailed deer (Odocoileus virginianus), understanding the neonatal survival rate of a population and factors that influence that survival rate, may be two of the most important factors to successful deer management. We examined neonatal survival in an eastern Kentucky population of deer living in relatively low densities (/ km²), with adequate habitat and supposedly poor population growth. Neonates (102) were captured in the summer birth periods of 2014 - 2016 and radio-monitored until the beginning of the …

Establishment Of Serological Reference Ranges For Elk In Kentucky And Effects Of Quarantine And Translocation On Elk, Aaron M. Hildreth

Theses and Dissertations--Forestry and Natural Resources

Establishing blood serum profiles is important for understanding animal disease ecology and nutrition, the effects of capture and immobilization, and general physiological variation among individuals and populations. Elk (Cervus elaphus nelsoni) have been successfully translocated to several states for reintroduction or population augmentation, including most recently in Kentucky, where over the course of three years (2011-13) wild elk were captured, temporarily quarantined, and subsequently moved to Missouri and Virginia to establish populations in those states. I used this opportunity to collect a variety of biological samples, including blood from which I present and compare serological profiles for a …

University Of North Florida Environmental Center Annual Report 2017, Maria Mark, James W. Taylor, Natalie Sassine, Tiffany Torres

Annual Reports

2017 Annual Report of the Environmental Center at the University of North Florida

Ligands Of Therapeutic Utility For The Liver X Receptors., Rajesh Komati, Dominick Spadoni, Shilong Zheng, Jayalakshmi Sridhar

Faculty and Staff Publications

Liver X receptors (LXRs) have been increasingly recognized as a potential therapeutic target to treat pathological conditions ranging from vascular and metabolic diseases, neurological degeneration, to cancers that are driven by lipid metabolism. Amidst intensifying efforts to discover ligands that act through LXRs to achieve the sought-after pharmacological outcomes, several lead compounds are already being tested in clinical trials for a variety of disease interventions. While more potent and selective LXR ligands continue to emerge from screening of small molecule libraries, rational design, and empirical medicinal chemistry approaches, challenges remain in minimizing undesirable effects of LXR activation on lipid metabolism. …

Quantification Of Copper Content With Laser Induced Breakdown Spectroscopy As A Potential Indicator Of Offal Adulteration In Beef, Maria Piedad Casado-Gavalda, Yash Dixit, David Geulen, Raquel Cama-Moncunill, Xavier Cama-Moncunill, Maria Markiewicz-Keszycka, Patrick J. Cullen, Carl Sullivan

Articles

Laser induced breakdown spectroscopy (LIBS) is an emerging technique in the field of food analysis which provides various advantages such as minimal sample preparation, chemical free, rapid detection, provision of spatial information and portability. In this study, LIBS was employed for quantitative analysis of copper content in minced beef samples spiked with beef liver over three independent batches. Copper content was determined with graphite furnace atomic absorption spectroscopy (GFAAS) in order to obtain reference values for modelling. Partial least square regression (PLSR) was performed to build a calibration and validation model. A calibration model with a high Rcv2 of 0.85 …

Measuring The Effects Of Recycled Water On The Growth Of Three Algal Species: Tisochrysis Lutea, Chaetcoeros Calcitrans, And C. Muelleri In A Commercial-Scale Oyster Hatchery, Lisa Marie Bourassa

LSU Master's Theses

Algal production is often the limiting factor in large-scale oyster hatcheries, and constant, reliable production is required to grow enough algae to support all oyster larvae and broodstock grown and conditioned in a hatchery. The algal rooms in the Michael C. Voisin Oyster Hatchery at Grand Isle, LA are temperature-controlled to maintain consistent temperature, but this hatchery is also unique in its ability to recycle natural seawater pumped from the northern Gulf of Mexico. Effects of recycling seawater on algal production in an oyster hatchery, however, are undocumented. In this study, Tisochrysis lutea, Chaetoceros calcitrans and C. muelleri were grown …

The Antibacterial Activity Of Metal Complexes Containing 1, 10-Phenanthroline: Potential As Alternatire Therapeutics In The Era Of Antibiotic Resistance, Livia Viganon, Orla L. Howe, Pauraic Mccarron, Malachy Mccann, Michael Devereux

Articles

The “antibiotic era”, characterized by the overuse and misuse of antibiotics, over the last half-century has culminated in the present critical “era of resistance”. The treatment of bacterial infections is challenging because of a decline in the current arsenal of useful antibiotics and the slow rate of new drug development. The discovery of a new gene (mcr-1) in 2015, which enables bacteria to be highly resistant to polymyxins (such as colistin), the last line of antibiotic defence left, heralds a new level of concern as this gene is susceptible to horizontal gene transfer, with alarming potential to be spread between …

Thermostability Of The Coating, Antigen And Immunostimulator In An Adjuvanted Oral Capsule Vaccine Formulation, Stephanie Longet, Vincenzo Aversa, Daire O'Donnell, Joshua Tobias, Monica Rosa, Jan Holmgren, Ivan Coulter, Ed Lavelle

Articles

Oral vaccines present an attractive alternative to injectable vaccines for enteric diseases due to ease of delivery and the induction of intestinal immunity at the site of infection. However, susceptibility to gastrointestinal proteolysis, limited transepithelial uptake and a lack of clinically acceptable adjuvants present significant challenges. A further challenge to mass vaccination in developing countries is the very expensive requirement to maintain the cold chain. We recently described the effectiveness of a Single Multiple Pill® (SmPill®) adjuvanted capsule approach to enhance the effectiveness of a candidate enterotoxigenic Escherichia coli (ETEC) oral vaccine. Here it was demonstrated that this delivery system …

Modeling Sex-Specific Seasonal Habitat Selection For Elk (Cervus Elaphus) In Central Washington, Lewis Meyers

All Master's Theses

Elk (Cervus elaphus) are generalist herbivores, exploiting a variety of environments. I studied habitat selection and sexual segregation of the Colockum elk herd in central Washington. I used a resource selection probability function (RSPF) to evaluate habitat use by males and females during summer and winter seasons. I assisted Washington State Department of Fish and Wildlife (WDFW) in capturing and placing GPS collars on males, and used an existing GPS dataset from females to investigate the extent to which sexual segregation was occurring in the Colockum herd. During summer, males selected steep slopes on north, west and south …

End-To-End Molecular Communication Channels In Cell Metabolism: An Information Theoretic Study, Zahmeeth Sayed Sakkaff, Jennie L. Catlett, Mikaela Cashman, Massimiliano Pierobon, Nicole R. Buan, Myra B. Cohen, Christine A. Kelley

Department of Biochemistry: Faculty Publications

The opportunity to control and fine-tune the behavior of biological cells is a fascinating possibility for many diverse disciplines, ranging from medicine and ecology, to chemical industry and space exploration. While synthetic biology is providing novel tools to reprogram cell behavior from their genetic code, many challenges need to be solved before it can become a true engineering discipline, such as reliability, safety assurance, reproducibility and stability. This paper aims to understand the limits in the controllability of the behavior of a natural (non-engineered) biological cell. In particular, the focus is on cell metabolism, and its natural regulation mechanisms, and …

Food Waste Reduction Strategies In Supermarkets: The Lived Experiences Of Perishable Food Managers In Michigan, Kelly K. Zimmermann

Walden Dissertations and Doctoral Studies

At the retail level, 25% of sellable food is wasted, and perishable foods account for 72% of food waste in the United States. The purpose of this qualitative phenomenological study was to explore the food waste reduction strategies used by supermarket perishable food department managers, which are covered under the Good Samaritan Food Donation Acts (state and federal). The participant population was comprised of 17 managers who are responsible for perishable foods departments (bakery, deli, meat, dairy, and produce) at local, regional, and national supermarkets in Midland, Michigan. Goal systems theory served as the conceptual framework lens for which the …

Twenty-First Century Climate Change And Submerged Aquatic Vegetation In A Temperate Estuary: The Case Of Chesapeake Bay, Thomas M. Arnold, Richard C. Zimmerman, Katharina A.M. Engelhardt, J. Court Stevenson

OES Faculty Publications

Introduction: The Chesapeake Bay was once renowned for expansive meadows of submerged aquatic vegetation (SAV). However, only 10% of the original meadows survive. Future restoration effortswill be complicated by accelerating climate change, including physiological stressors such as a predicted mean temperature increase of 2-6°C and a 50-160% increase in CO2 concentrations.

Outcomes: As the Chesapeake Bay begins to exhibit characteristics of a subtropical estuary, summer heat waves will become more frequent and severe. Warming alone would eventually eliminate eelgrass (Zostera marina) from the region. It will favor native heat-tolerant species such as widgeon grass (Ruppia maritima) while facilitating colonization by …

A Comparison Of Benthic Macroinvertebrate Assemblages Between Perennial And Intermittent Headwater Streams Of The Mattole River In Northern California, Usa, Mason S. London

Cal Poly Humboldt theses and projects

Intermittent streams are common throughout the world and comprise 60% or more of total river lengths in the conterminous United States. Despite their prevalence, intermittent streams are understudied, particularly first-order headwater streams, which are vital for maintaining the function, health and biotic diversity of river networks. In June 2016, I sampled five intermittent and five perennial headwater streams in the Mattole River watershed in northwestern coastal California, USA, to compare benthic macroinvertebrate (BMI) assemblages between intermittent and perennial streams. BMI samples were collected using a 500µm mesh D-net at eight randomly located riffles along a 150-m reach, and then composited, …

Weight Perception And Weight Loss Behaviors: A Comparison Between Adolescents With And Without Autism Spectrum Disorder, Elanor J. Anderson

Cal Poly Humboldt theses and projects

OBJECTIVE: The primary purpose of this study is to investigate the accuracy of weight status perception among adolescents with and without Autism Spectrum Disorder. A secondary purpose is to compare weight loss behaviors between children with and without ASD.

METHODS: This study measured weight-perception and weight loss behaviors among Irish-thirteen-year olds with ASD (n=47) and typically developing (TD) children (n=47) (72% male). Participants completed questionnaires assessing perception of weight and weight loss behaviors. . Based on BMI, calculated from height and weight measurements, participants were classified as non-overweight, overweight and obese. Several Chi-square tests were used to examine (1) differences …

Pesticide Concentrations In Water From A Southern Louisiana Marsh Influenced By The Mississippi River, Kara Leigh Callicott

LSU Master's Theses

The pesticides atrazine, chlorothalonil, and fipronil are common surface water contaminants due to their high rates of application and their chemical properties. This study investigates the introduction of contaminants into coastal wetlands via the Bayou Lamoque Mississippi River control structure in Plaquemines Parish, Louisiana. A protocol for environmental sampling using Continuous Low-level Aquatic Monitoring (C.L.A.M.) C-18 disks is described, along with effective solid phase extraction (SPE) and gas chromatography mass spectrometry (GC/MS) methodology for the determination of atrazine, chlorothalonil, and fipronil in surface water. Average concentrations of atrazine and chlorothalonil inside the Bayou Lamoque freshwater diversion structure for the months …

Anti-Angiogenic And Cytotoxic Activities Of Rotenoids From Derris Trifoliata Lour., Yanisa Mittraphab

Chulalongkorn University Theses and Dissertations (Chula ETD)

This study aimed to isolate metabolites of D. trifoliata stem and to evaluate their cytotoxic and anti-angiogenic activities. Chromatographic fractionation of the EtOAc led to the isolation of eight known rotenoids (1-2, 4-6, 11-12 and 15). All compounds were first evaluated for their cytotoxicity against three cancer cell lines; human cervical carcinoma (CaSki), colon cancer (HCT-116), hepato carcinoma (Hep-G2) and normal human colon epithelial (CCD841) cells. All Compounds showed cytotoxicity against HCT-116 with IC50 ranging 0.12-11.21 µM, while they were weak or no activity against Hep-G2 and CaSKi cells. Moreover, it was found that 12a-hydroxyrotenone (11) potently inhibited migration of …

Analysis Of Microbial Diversity In Disturbed Soil, Tyler G. Sanda

Williams Honors College, Honors Research Projects

This paper uses the composition and abundance of microbial species to analyze soil recovery in disturbed land. Surface mining disturbs ecological communities throughout the world. As organizations seek to reclaim these disturbed lands, a proper analysis of recovery is needed. In previous studies, recovery of disturbed land was limited to surface examinations, which do not characterize the possible unseen devastating effects of the subsoil. Soil microorganisms are extremely sensitive to environmental changes such as strip mining. It is proposed that these microorganisms may serve as better indicators of recovery post disturbance. Our analysis indicates microbial recovery, however it may not …

Terahertz Molecular Spectroscopy As A Tool For Analytical Probing Of Cellular Metabolism, Mitchell Cameron Paul

Browse all Theses and Dissertations

Terahertz spectroscopy has found use as an analytical tool in determining chemical composition of exhaled human breath. This thesis demonstrates a novel application of this technology - analytical sensing of gaseous metabolic products of several types of human cell cultures. An innovative experimental system was developed for probing cellular metabolism using terahertz [THz] rotational spectroscopy. Gaseous emissions of cell cultures were analyzed and compared between several cell types. Cancerous and healthy lung cells as well as cancerous liver cells were studied. This technique carries a lot of promise as a noninvasive method of distinguishing between cell types and identifying cell …

Effect Of Different Debranning Degrees On The Qualities Of Whole Wheat Flour And Chinese Steamed Bread, Jikai Zhao, Fengcheng Wang, Wenjun Fu, Mengjie Wang

School of Earth, Environmental, & Marine Sciences Faculty Publications

Abstract: Strong gluten, middle-strong gluten and middle gluten wheat were used as raw materials to obtain whole wheat flour by dry debranning process, and the effect of different debranning degrees on the quality of wheat kernel, whole wheat flour and Chinese steamed bread was evaluated. The results showed that the ash content, hardness index and thousand kernel weight of wheat kernels were decreased with increasing debranning degree by 0.17%, 1.0–1.5 and 1.74–1.82 g, respectively, whereas the volume weight was increased by 22.0–23.4 g/L. The contents of ash and damaged starch in whole wheat flour were decreased by 0.12%–0.14% and 1.0–2.1 …

Detection And Analysis Of Polyurethane Biodegradation Due To Cryptococcus Laurentii, Tyler Jacob Zicht

Browse all Theses and Dissertations

Current United States aircraft are equipped with a multitude of protective coatings on the interior and exterior of the vehicle, ultimately enhancing their ability to ensure a safe and effective mission. Aircraft, over the course of their lifetime, will experience impact, corrosion, weathering, and microbial damage to its defensive structures, rendering it vulnerable to attacks. Damaged coatings are then repaired on the aircraft once detected in inspection or replaced in accordance to the lifecycle of the material on the aircraft. However potentially harmful threats such as bacteria are not considered by the Air Force to be dangerous. Therefore, the purpose …

Biosimp: Using Software Testing Techniques For Sampling And Inference In Biological Organisms, Mikaela Cashman, Jennie L. Catlett, Myra B. Cohen, Nicole R. Buan, Zahmeeth Sakkaff, Massimiliano Pierobon, Christine A. Kelley

School of Computing: Conference and Workshop Papers

Years of research in software engineering have given us novel ways to reason about, test, and predict the behavior of complex software systems that contain hundreds of thousands of lines of code. Many of these techniques have been inspired by nature such as genetic algorithms, swarm intelligence, and ant colony optimization. In this paper we reverse the direction and present BioSIMP, a process that models and predicts the behavior of biological organisms to aid in the emerging field of systems biology. It utilizes techniques from testing and modeling of highly-configurable software systems. Using both experimental and simulation data we show …

Transcriptional And Antagonistic Responses Of Biocontrol Strain Lysobacter Enzymogenes Oh11 To The Plant Pathogenic Oomycete Pythium Aphanidermatum, Yangyang Zhao, Guoliang Qian, Yuan Chen, Liangcheng Du, Fengquan Liu

Department of Chemistry: Faculty Publications

Lysobacter enzymogenes is a ubiquitous, beneficial, plant-associated bacterium emerging as a novel biological control agent. It has the potential to become a new source of antimicrobial secondary metabolites such as the Heat-Stable Antifungal Factor (HSAF), which is a broad-spectrum antimycotic with a novel mode of action. However, very little information about how L. enzymogenes detects and responds to fungi or oomycetes has been reported. An in vitro confrontation bioassay between the pathogenic oomycete Pythium aphanidermatum and the biocontrol bacterial strain L. enzymogenes OH11 was used to analyze the transcriptional changes in the bacteria that were induced by the oomycetes. Analysis …