Digital Commons Network^™

Smart Sequence Similarity Search (S⁴) System, Zhuo Chen

Theses Digitization Project

Sequence similarity searching is commonly used to help clarify the biochemical and physiological features of newly discovered genes or proteins. An efficient similarity search relies on the choice of tools and their associated subprograms and numerous parameter settings. To assist researchers in selecting optimal programs and parameter settings for efficient sequence similarity searches, the web-based expert system, Smart Sequence Similarity Search (S4) was developed.

Water Quality Assessment: A Hands-On Approach To Environmental Education, Tracy Lynn Royse

All Graduate Projects

A water quality assessment lab manual has been created to assist secondary educators using the HACH water quality testing kits. It consists of ten chemical tests, a geological survey and a biological assessment largely based upon Washington State University's lab format and the Walla Walla County Conservation District's water study protocol. The lab manual also contains safety guidelines, a scoring rubric and an action plan research project. The environmental approach to science education used in the lab manual meets the Essential Academic Learning Requirements adopted by the Washington State Commission on Student Learning as well as the National Science Education …

Reconstructability Analysis With Fourier Transforms, Martin Zwick

Complex Systems Faculty Publications and Presentations

Fourier methods used in two‐ and three‐dimensional image reconstruction can be used also in reconstructability analysis (RA). These methods maximize a variance‐type measure instead of information‐theoretic uncertainty, but the two measures are roughly collinear and the Fourier approach yields results close to that of standard RA. The Fourier method, however, does not require iterative calculations for models with loops. Moreover, the error in Fourier RA models can be assessed without actually generating the full probability distributions of the models; calculations scale with the size of the data rather than the state space. State‐based modeling using the Fourier approach is also …

Adaptive Intelligent User Interfaces With Emotion Recognition, Fatma Nasoz

Electronic Theses and Dissertations

The focus of this dissertation is on creating Adaptive Intelligent User Interfaces to facilitate enhanced natural communication during the Human-Computer Interaction by recognizing users' affective states (i.e., emotions experienced by the users) and responding to those emotions by adapting to the current situation via an affective user model created for each user. Controlled experiments were designed and conducted in a laboratory environment and in a Virtual Reality environment to collect physiological data signals from participants experiencing specific emotions. Algorithms (k-Nearest Neighbor [KNN], Discriminant Function Analysis [DFA], Marquardt-Backpropagation [MBP], and Resilient Backpropagation [RBP]) were implemented to analyze the collected data signals …

Speech Enabled E-Learning Technology For Adult Literacy Tutoring, Jason Meade

Theses

This research presents the work involved in developing a speech-enabled e-Learning prototype for use in literacy tutoring. As the main objective was to develop an interface for literacy learning, initial research concentrated on establishing a framework for literacy e-Leaming through the use of speech technology. Requirements for best practice e-Learning and the relevance of learning theories to an e-Learning application were also investigated. The technologies to facilitate this, such as text to speech technologies and mark-up languages, were addressed during the implementation of speech-enabled prototypes. Both server-side and client-side prototypes were implemented to investigate speech technology. Testing found the server-side …

Creating A Video Device Application, Kevin Septor

Honors Theses

A video device, such as a webcam, has the capability to be used in many ways, including recording video and behaving like a security camera. A TV tuner card can also record video, and in addition be used for watching television. However, the video hardware and device driver the operating system uses to access it are only capable of delivering raw frames of video. A user space application is necessary for exploiting the capabilities of such a device beyond reading sequential frames of video. This research explores the desiderata in a powerful video device application, and introduces a program that …

A Similarity Based Concordance Approach To Word Sense Disambiguation, Ramakrishnan B. Guru

Masters Theses

This study attempts to solve the problem of Word Sense Disambiguation using a combination of statistical, probabilistic and word matching algorithms. These algorithms consider that words and sentences have some hidden similarities and that the polysemous words in any context should be assigned to a sense after each execution of the algorithm. The algorithm was tested with sufficient sample data and the efficiency of the disambiguation performance has proven to increase significantly after the inclusion of the concordance methodology.

Dit-Call: Naturally Speaking But Slow, Dermot Campbell, Marty Meinardi, Bunny Richardson, Eugene Coyle, Olivia Donnellan, Pak Kui Leung, Ciaran Macdonaill, Elmar Jung, Charles Pritchard

Articles

This paper introduces a new development in speech technology and describes its planned application in an EFL context. Special attention is paid to the pedagogical potential of the resultant language tool.

Semantic Web Research Center Report: Lsdis Lab, Research In Semantic Bioinformatics, Semantic Analytics And Semantic Web Processes, Amit P. Sheth

Kno.e.sis Publications

The LSDIS Lab advances the field of distributed information systems by researching semantic techniques for exploiting heterogeneous multimedia information and improving processes, encompassing the central promise of the Semantic Web initiative. It is pursuing cutting edge research in ontology development for demanding scientific domains, semantic heterogeneity and integration, complex relationships discovery and semantic analytics, and Semantic Web services and processes. Past work of the LSDIS lab can be characterized by keywords: semantic interoperability, syntactic and semantic metadata for text and digital media, metadata based integration of Web content, ontology-driven information systems, multi-ontology query processing, transactional workflows and workflow management. Significant …

Analysis Of Social Aspects Of Migrant Labourers Living With Hiv/Aids Using Fuzzy Theory And Neutrosophic Cognitive Maps, Florentin Smarandache, W.B. Vasantha Kandasamy

Branch Mathematics and Statistics Faculty and Staff Publications

Neutrosophic logic grew as an alternative to the existing topics and it represents a mathematical model of uncertainty, vagueness, ambiguity, imprecision, undefined-ness, unknown, incompleteness, inconsistency, redundancy and contradiction. Despite various attempts to reorient logic, there has remained an essential need for an alternative system that could infuse into itself a representation of the real world. Out of this need arose the system of neutrosophy and its connected logic, neutrosophic logic. This new logic, which allows also the concept of indeterminacy to play a role in any real-world problem, was introduced first by one of the authors Florentin Smarandache. In this …

Reconstructability Analysis: Theory And Applications [Editorial Introduction], Martin Zwick, Guangfu Shu, Yi Lin

Complex Systems Faculty Publications and Presentations

Reconstructability analysis (RA) dates back to the pioneering work of Ashby in the mid-1960s. In the 1970s and 1980s, RA was the subject of very active research in the systems community. It receded for a time as a focus of activity, but the special issue of the International Journal of General Systems in 1996 on the General Systems Problem Solver and the special IJGS issue in 2000 on Reconstructability Analysis in China marked the renewal of interest in this area. The current volume is part of this resurgence of activity. It collects together papers from the group at Portland State …

A Software Architecture For Reconstructability Analysis, Kenneth Willett, Martin Zwick

Complex Systems Faculty Publications and Presentations

Software packages for reconstructability analysis (RA), as well as for related log linear modeling, generally provide a fixed set of functions. Such packages are suitable for end‐users applying RA in various domains, but do not provide a platform for research into the RA methods themselves. A new software system, Occam3, is being developed which is intended to address three goals which often conflict with one another to provide: a general and flexible infrastructure for experimentation with RA methods and algorithms; an easily‐configured system allowing methods to be combined in novel ways, without requiring deep software expertise; and a system which …

The Faith Factor: New Testament Cosmology In Its Historical Context, Keith A. Burton

Journal of the Adventist Theological Society

No abstract provided.

Anomaly-Free Component Adaptation With Class Overriding, Atanas Radenski

Mathematics, Physics, and Computer Science Faculty Articles and Research

Software components can be implemented and distributed as collections of classes, then adapted to the needs of specific applications by means of subclassing. Unfortunately, subclassing in collections of related classes may require re-implementation of otherwise valid classes just because they utilize outdated parent classes, a phenomenon that is referred to as the subclassing anomaly. The subclassing anomaly is a serious problem since it can void the benefits of component-based programming altogether. We propose a code adaptation language mechanism called class overriding that is intended to overcome the subclassing anomaly. Class overriding does not create new and isolated derived classes as …

Algebraic Semantics For Coalgebraic Logics, Clemens Kupke, Alexander Kurz, Dirk Pattinson

Engineering Faculty Articles and Research

With coalgebras usually being defined in terms of an endofunctor T on sets, this paper shows that modal logics for T-coalgebras can be naturally described as functors L on boolean algebras. Building on this idea, we study soundness, completeness and expressiveness of coalgebraic logics from the perspective of duality theory. That is, given a logic L for coalgebras of an endofunctor T, we construct an endofunctor L such that L-algebras provide a sound and complete (algebraic) semantics of the logic. We show that if L is dual to T, then soundness and completeness of the algebraic semantics immediately yield the …

Parametric Classification In Domains Of Characters, Numerals, Punctuation, Typefaces And Image Qualities, Osama Ahmed Khan

Theses and Dissertations - UTB/UTPA

This thesis contributes to the Optical Font Recognition problem (OFR), by developing a classifier system to differentiate ten typefaces using a single English character ‘e’. First, features which need to be used in the classifier system are carefully selected after a thorough typographical study of global font features and previous related experiments. These features have been modeled by multivariate normal laws in order to use parameter estimation in learning. Then, the classifier system is built up on six independent schemes, each performing typeface classification using a different method. The results have shown a remarkable performance in the field of font …

Integrating Perception, Language And Problem Solving In A Cognitive Agent For A Mobile Robot., Deryle W. Lonsdale, D. Paul Benjamin, Damian M. Lyons

Faculty Publications

We are implementing a unified cognitive architecture for a mobile robot. Our goal is to endow a robot agent with the full range of cognitive abilities, including perception, use of natural language, learning and the ability to solve complex problems. The perspective of this work is that an architecture based on a unified theory of robot cognition has the best chance of attaining human-level performance.

This agent architecture is an integration of three theories: a theory of cognition embodied in the Soar system, the RS formal model of sensorimotor activity and an algebraic theory of decomposition and reformulation.

These three …

Glacial Deposits, Vol. 32, 2003-2004, Department Of Geography-Geology

Glacial Deposits

Newsletter of the Department of Geography-Geology

Evaluation Of An Esperanto-Based Interlingua Multilingual Survey Form Machine Translation Mechanism Incorporating A Sublanguage Translation Methodolgy, Richard Boddington

Theses : Honours

Translation costs restrict the preparation of medical survey and other questionnaires for migrant communities in Western Australia. This restriction is compounded by a lack of affordable and accurate machine translation mechanisms. This research investigated and evaluated combined strategies intended to provide an efficacious and affordable machine translator by: • using an interlingua or pivot-language that requires less resources for its construction than contemporary systems and has the additional benefit of significant error reduction; and • defining smaller lexical environments to restrict data, thereby reducing the complexity of translation rules and enhancing correct semantic transfer between natural languages. This research focussed …

116th Annual Meeting Of The Iowa Academy Of Science [Program, 2004], Iowa Academy Of Science

Iowa Academy of Science Documents

Contents:

Notes Page --- 3
Friday Program Summary --- 4
Senior Academy Poster Presentation Titles --- 5
General Session Speakers --- 7
Symposia Programs --- 8
Saturday Program Summary --- 9
Section Meeting Programs (Alphabetical by Section) --- 9
2004 Awards --- 14
Abstracts (by Section) --- 15
Author Index --- 42

Istart: Interactive Strategy Training For Active Reading And Thinking, Danielle S. Mcnamara, Irwin B. Levinstein, Chutima Boonthum

Computer Science Faculty Publications

Interactive Strategy Training for Active Reading and Thinking (iSTART) is a Web-based application that provides young adolescent to college-age students with high-level reading strategy training to improve comprehension of science texts. iSTART is modeled after an effective, human-delivered intervention called self-explanation reading training (SERT), which trains readers to use active reading strategies to self-explain difficult texts more effectively. To make the training more widely available, the Web-based trainer has been developed. Transforming the training from a human-delivered application to a computer-based one has resulted in a highly interactive trainer that adapts its methods to the performance of the students. The …

Towards A Taxonomy Of Aspect-Oriented Programming., Mario Bernard Hankerson

Electronic Theses and Dissertations

As programs continue to increase in size, it has become increasingly difficult to separate concerns into well localized modules, which leads to code tangling- crosscutting code spread throughout several modules. Thus, Aspect-Oriented Programming (AOP) offers a solution to creating modules with little or no crosscutting concerns. AOP presents the notion of aspects, and demonstrates how crosscutting concerns can be taken out of modules and placed into a centralized location.

In this paper, a taxonomy of aspect-oriented programming, as well as a basic overview and introduction of AOP, will be presented in order to assist future researchers in getting started on …

Semantic (Web) Technology In Action: Ontology Driven Information Systems For Search, Integration, And Analysis, Amit P. Sheth, Cartic Ramakrishnan

Kno.e.sis Publications

Semantics is seen as the key ingredient in the next phase of the Web infrastructure as well as the next generation of information systems applications. In this context, we review some of the reservations expressed about the viability of the Semantic Web. We respond to these by identifying a Semantic Technology that supports the key capabilities also needed to realize the Semantic Web vision, namely representing, acquiring and utilizing knowledge. Given that scalability is a key challenge, we briefly review our observations from developing three classes of real world applications and corresponding technology components: search/browsing, integration, and analytics. We distinguish …

Visualization Of Internet Web Pages Based On Authority And Word Frequency, David Navarro

Theses and Dissertations - UTB/UTPA

The growth, accessibility, and integration of the World Wide Web with contemporary information utilization provides a rich domain in which to explore information retrieval systems. One approach in the evolution of retrieval systems couples successful and long-standing techniques of information retrieval with new techniques, such as visualization. The system developed and reported in this thesis takes this approach. It builds upon well-known techniques of information retrieval including stemming, keyword matching, and cosine similarity. It also incorporates the new and relatively successful hubs and authority approach, which describes Web documents by their reference by other documents. Finally, it develops a new …

Predicting Nonlinear Network Traffic Using Fuzzy Neural Network, Zhaoxia Wang, Tingzhu Hao, Zengqiang Chen, Zhuzhi Yuan

Research Collection School Of Computing and Information Systems

Network traffic is a complex and nonlinear process, which is significantly affected by immeasurable parameters and variables. This paper addresses the use of the five-layer fuzzy neural network (FNN) for predicting the nonlinear network traffic. The structure of this system is introduced in detail. Through training the FNN using back-propagation algorithm with inertia] terms the traffic series can be well predicted by this FNN system. We analyze the performance of the FNN in terms of prediction ability as compared with solely neural network. The simulation demonstrates that the proposed FNN is superior to the solely neural network systems. In addition, …

Semantic E-Workflow Composition, Jorge Cardoso, Amit P. Sheth

Kno.e.sis Publications

Systems and infrastructures are currently being developed to support Web services. The main idea is to encapsulate an organization's functionality within an appropriate interface and advertise it as Web services. While in some cases Web services may be utilized in an isolated form, it is normal to expect Web services to be integrated as part of workflow processes. The composition of workflow processes that model e-service applications differs from the design of traditional workflows, in terms of the number of tasks (Web services) available to the composition process, in their heterogeneity, and in their autonomy. Therefore, two problems need to …

Wright State University College Of Engineering And Computer Science Bits And Pcs Newsletter, Volume 20, Number 2, October 2003, College Of Engineering And Computer Science, Wright State University

BITs and PCs Newsletter

An eight page newsletter created by the Wright State University College of Engineering and Computer Science that addresses the current affairs of the college.

Automatic Video Summarization By Graph Modeling, Chong-Wah Ngo, Yu-Fei Ma, Hong-Jiang Zhang

Research Collection School Of Computing and Information Systems

We propose a unified approach for summarization based on the analysis of video structures and video highlights. Our approach emphasizes both the content balance and perceptual quality of a summary. Normalized cut algorithm is employed to globally and optimally partition a video into clusters. A motion attention model based on human perception is employed to compute the perceptual quality of shots and clusters. The clusters, together with the computed attention values, form a temporal graph similar to Markov chain that inherently describes the evolution and perceptual importance of video clusters. In our application, the flow of a temporal graph is …

Semantic Web In Action: Ontology-Driven Information Search, Integration And Analysis, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Aggregated Causal Maps: An Approach To Elicit And Aggregate The Knowledge Of Multiple Experts, S. Nadkarni, Fiona Fui-Hoon Nah

Research Collection School Of Computing and Information Systems

This paper presents a systematic procedure to elicit and aggregate the knowledge of multiple individual experts and represent it in the form of an Aggregated Causal Map (ACM). This procedure differs from existing methods in two ways. First, unlike other methods, this method does not rely on group interaction in eliciting knowledge of multiple experts, and, therefore, is not fraught with biases associated with group dynamics. Second, this method uses both the idiographic and nomothetic approaches while existing methods focus on nomothetic approaches to knowledge elicitation. We draw on the strengths of both approaches by using the idiographic approach to …