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Vibrio Parahaemolyticus Interactions With Chitin In Response To Environmental Factors, Vanessa Molina

LSU Doctoral Dissertations

Vibrio parahaemolyticus is a naturally occurring chitinoclastic human pathogen that adsorbs to substrates, including chitinous copepods and oysters, as part of its ecology, a phenomenon that is important in its responses to changes in environmental factors such as temperature and salinity. Little is known about acute responses of V. parahaemolyticus when subjected to abrupt environmental changes such as those encountered during postharvest oyster treatments such as icing, exposure to mammalian host conditions, and transport via ballast water. The following in vitro studies investigated V. parahaemolyticus adsorption and gene expression as a function of substrate, temperature, and salinity as a model …

Kestabilan Global Bebas Penyakitflu Singapura (Hand, Foot And Mouth Disease)Berdasarkan Model Seirs, Eminugroho Ratna Sari

PYTHAGORAS : Jurnal Matematika dan Pendidikan Matematika

AbstrakPenelitian mengenai penyebaran HFMD pertama dilakukan menggunakan model SIR. Pada model ini,populasi individu yang sebenarnya telah terinfeksi tetapi belum menunjukkan gejala-gejala penyakit tidakdijelaskan. Dalam paper ini akan dibahas mengenai pembentukan model matematika dari penyebaranpenyakit HFMD menggunakan model SEIRS. Adanya penambahan kelas populasi E (Exposed) untukmelengkapi kekurangan pada model sebelumnya. Berdasarkan model, diperoleh titik ekuilibrium bebaspenyakit dan endemik. HFMD tidak akan mewabah jika R0 ï"¼1. Selanjutnya dilakukan simulasimenggunakan MAPLE 13.

Biorecognition Ability Of Polysaccharides As Piezo Quartz Biosensors, En Kalmykova, Ca Mgina

Tanzania Journal of Science

Piezoquartz biosensors (PQB) which are analytical devices for recognition of biochemical interactions have recently attracted increasing interest from different researchers such as analysts, immune-chemists, medical doctors, environmentalists, etc. This is due to the advantages of PQB for having high detection sensitivity (at ng and mg level depending on the mass of sorbates or micro-organisms) and the ability to monitor biochemical reactions in turbid or highly coloured liquids (including in biological fluids) in real time. The use of additional markers and preliminary sample preparation are not required in this biorecognition process. This paper reports on the principle of the PQB and …

The Lyme Disease Spirochete In Tick Species Collected From Warren County, Kentucky, Cheryl C. Onwu

Mahurin Honors College Capstone Experience/Thesis Projects

The overall goal of this present study was to determine the prevalence of the Lyme disease spirochete, Borrelia burgdorferi, in south central Kentucky. A survey of ticks collected from a single location in Warren County, Kentucky was conducted between the months of April and June, 2010. A total of 293 ticks were collected. Three species were identified: 264 (91.7 %) of the ticks were Amblyoma americanum, 18 (6.6%) were Dermacentor variabilis, and 1 (0.35%) was Ixodes scapularis. The ten remaining ticks were immature nymphs and could not be identified. After identifying the species and sex of …

Stream-Associated Amphibian Habitat Assessment In The Portland-Vancouver Metropolitan Region, Andrew Evans Dietrich

Dissertations and Theses

This study assessed the influence of landscape development on stream-associated amphibians in forested riparian areas within the Portland-Vancouver metropolitan region. Human alteration of landscapes may dramatically affect the ecology of neighboring aquatic systems. It was hypothesized that lotic amphibians would be negatively associated with greater amounts of landscape development and positively associated with forested area within the surrounding watershed. Thirty-seven 1st-3rd order streams were sampled between June 21st and September 21st in 2011. Streams potentially providing adequate habitat for stream-obligate amphibians were randomly selected. Amphibians were surveyed along 30-meter stream transects using an active-cover search (ACS). Environmental variables associated with …

Progression Magazine, 2012-2013, Coastal Carolina University

Progression Magazine

Magazine of the College of Science at Coastal Carolina University.

Climate Change And The Spread Of Vector-Borne Infectious Diseases, Courtney B. Reed

Social Sciences

No abstract provided.

Synthesis And Biological Activity Of Aminoglycosides And 1,4-Naphthoquinone Derivatives, Marina Fosso Yatchang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The research described in this dissertation is at the interface of organic chemistry and biology, and it aimed at designing and synthesizing biologically active molecules for the possible development of therapeutic agents.

Spinal muscular atrophy is an incurable disease that affects 1 in every 6000 babies, making it the leading genetic cause of infant mortality. While no treatment is available, efforts are being taken to solve this issue. Part of the work outlined in this dissertation was carried out in collaboration with researchers from the University of Missouri to investigate a potential therapeutic for this disease.

In addition, the continuous …

Rickettsia Felis In Cat Fleas, Ctenocephalides Felis Parasitizing Opossums, San Bernardino County, California, Kyle F. Abramowicz, J. W. Wekesa, C. N. Nwadike, Maria L. Zambrano, Sandor E. Karpathy, D. Cecil, J. Burns, R. Hu, Marina E. Eremeeva

Environmental Health Sciences: Faculty Publications

Los Angeles and Orange Counties are known endemic areas for murine typhus in California; however, no recent reports of flea-borne rickettsioses are known from adjacent San Bernardino County. Sixty-five opossums (Didelphis virginiana) were trapped in the suburban residential and industrial zones of the southwestern part of San Bernardino County in 2007. Sixty out of 65 opossums were infested with fleas, primarily cat fleas, Ctenocephalides felis (Bouché, 1835). The flea minimum infection rate with Rickettsia felis was 13.3% in pooled samples and the prevalence was 23.7% in single fleas, with two gltA genotypes detected. In spite of historic records of murine …

Insights From Characterizing Extinct Human Gut Microbiomes, Raul Y. Tito, Dan Knights, Jessica Metcalf, Alexandra J. Obregon-Tito, Lauren Cleeland, Fares Najar, Bruce Roe, Karl Reinhard, Kristin Sobolik, Samuel Belknap, Morris Foster, Paul Spicer, Rob Knight, Cecil M. Lewis, Jr.

School of Natural Resources: Faculty Publications

In an effort to better understand the ancestral state of the human distal gut microbiome, we examine feces retrieved from archaeological contexts (coprolites). To accomplish this, we pyrosequenced the 16S rDNA V3 region from duplicate coprolite samples recovered from three archaeological sites, each representing a different depositional environment: Hinds Cave (~8000 years B.P.) in the southern United States, Caserones (1600 years B.P.) in northern Chile, and Rio Zape in northern Mexico (1400 years B.P.). Clustering algorithms grouped samples from the same site. Phyletic representation was more similar within sites than between them. A Bayesian approach to source-tracking was used to …

Group Testing Regression Models, Boan Zhang

Department of Statistics: Dissertations, Theses, and Student Research

Group testing, where groups of individual specimens are composited to test for the presence or absence of a disease (or some other binary characteristic), is a procedure commonly used to reduce the costs of screening a large number of individuals. Statistical research in group testing has traditionally focused on a homogeneous population, where individuals are assumed to have the same probability of having a disease. However, individuals often have different risks of positivity, so recent research has examined regression models that allow for heterogeneity among individuals within the population. This dissertation focuses on two problems involving group testing regression models. …

Using Microbial Source Tracking Techniques To Identify Fecal Indicator Bacteria In The Horse Creek Watershed In Aiken, Sc, Pamela W. Steen, Paul Thomas, S Michele Harmon

S.C. Water Resources Conference

2012 S.C. Water Resources Conference - Exploring Opportunities for Collaborative Water Research, Policy and Management

Borrowing Information Across Populations In Estimating Positive And Negative Predictive Values, Ying Huang, Youyi Fong, John Wei, Ziding Feng

UW Biostatistics Working Paper Series

A marker's capacity to predict risk of a disease depends on disease prevalence in the target population and its classification accuracy, i.e. its ability to discriminate diseased subjects from non-diseased subjects. The latter is often considered an intrinsic property of the marker; it is independent of disease prevalence and hence more likely to be similar across populations than risk prediction measures. In this paper, we are interested in evaluating the population-specific performance of a risk prediction marker in terms of positive predictive value (PPV) and negative predictive value (NPV) at given thresholds, when samples are available from the target population …

Scwds Briefs: Volume 28, Number 3 (October 2012), Jeanenne Brewton, Michael J. Yabsley

Southeastern Cooperative Wildlife Disease Study: Publications

Hemorrhagic Disease 2012 - One for the Record Books?

A Big Year for West Nile Virus

A New Tick-Borne Virus in Missouri?

EEE Virus in 2012

Hantavirus Outbreak – Yosemite National Park

Zebra Virus in Polar Bears

A New Virus in Australian Bats

Computational Modeling Of Protein Dynamics With Gromacs And Java, Miaoer Yu

Master's Projects

GROMACS is a widely used package in molecular dynamics simulations of biological molecules such as proteins, and nucleic acids, etc. However, it requires many steps to run such simulations from the terminal window. This could be a challenge for those with minimum amount of computer skills. Although GROMACS provides some tools to perform the standard analysis such as density calculation, atomic fluctuation calculation, it does not have tools to give us information on the specific areas such as rigidity that could predict the property of the molecules. In this project, I have developed a user friendly program to carry out …

Hydro Power, People Power: Hydroelectricity’S Potential For Community Development, With A Focus On The Khimti 1 Project, Amelia Prior

Independent Study Project (ISP) Collection

Hydropower, a source of renewable energy that transforms water into electricity, has great potential in Nepal. It can be used to electrify homes, increase efficiency of agriculture, and improve businesses to spur economic growth. This research will examine the current status of hydropower in Nepal and the main obstacles to its expansion. More importantly, however, is the importance on developing hydropower responsibly and ethically. Harnessing the energy and generating electricity is not enough; hydropower projects should involve their surrounding communities, affecting genders, ethnic groups, and socio-economic classes equally. This research will examine how communities are affected by hydroelectricity projects and …

Transitions Among Health States Using 12 Measures Of Successful Aging: Results From The Cardiovascular Health Study, Stephen Thielke, Paula Diehr

UW Biostatistics Working Paper Series

Introduction

Successful aging has many dimensions, which may manifest differently in men and women and at different ages. We sought to characterize one-year transitions in 12 measures of successful aging among a large cohort of older adults.

Methods

We analyzed twelve different measures of health in the Cardiovascular Health Study: self-rated health, ADLs, IADLs, depression, cognition, timed walk, number of days spent in bed, number of blocks walked, extremity strength, recent hospitalizations, feelings about life as a whole, and life satisfaction. We dichotomized responses for each variable into “healthy” or “sick”, and estimated the prevalence of the healthy state and …

Quantification And In Vitro Analysis Of Nanolipoproteins (Nlps) Containing Adjuvants, Purna Venkataraman, Craig Blanchette, Nicholas O. Fischer

STAR Program Research Presentations

Nanolipoprotein particles (NLPs) self-assemble into nanoscale structures that can be used as vaccines or drug delivery agents. Due to the nature of the NLPs, a variety of immune stimulating compounds or adjuvants can be readily incorporated into NLPs: a characteristic difficult to engineer into most other nanoscale platforms. In light of this, a method for quantifying the amount adjuvant actually incorporated into NLPs is a question of high importance. Through the use of reverse phase High-Performance Liquid Chromatography (HPLC) and an Evaporative Light Scattering Detector (ELSD), standard curves can be constructed by analyzing mixtures of NLP components of known concentration, …

An Examination Of White-Nose Syndrome Occurrence And Dispersal Patterns: Utilizing Global And Local Moran's I Analysis To Evaluate An Emerging Pathogen, Celia M. Davis

Masters Theses & Specialist Projects

In this research, a novel approach that utilizes Moran’s I statistical analyses to examine the spatio-temporal dispersal patterns of the White-Nose Syndrome currently affecting North American bat species is undertaken to further understand the disease transmission mechanism(s) of this emerging wildlife epidemic. White-Nose Syndrome has been responsible for in excess of five million bat deaths to date and has the potential to alter the ecological landscape significantly; however, due to a variety of factors, little research has been conducted into the patterns of infection on a national scale. Global and Local Moran’s I analyses were performed on the spatial-temporal variable …

Fall In C-Peptide During First 2 Years From Diagnosis: Evidence Of At Least Two Distinct Phases From Composite Type 1 Diabetes Trialnet Data., Carla J. Greenbaum, Craig A. Beam, David Boulware, Stephen E. Gitelman, Peter A. Gottlieb, Kevan C. Herold, John M. Lachin, Paula L. Mcgee, Jerry P. Palmer, Mark D. Pescovitz, Heidi Krause-Steinrauf, Jay S. Skyler, Jay M. Sosenko

Epidemiology Faculty Publications

Interpretation of clinical trials to alter the decline in β-cell function after diagnosis of type 1 diabetes depends on a robust understanding of the natural history of disease. Combining data from the Type 1 Diabetes TrialNet studies, we describe the natural history of β-cell function from shortly after diagnosis through 2 years post study randomization, assess the degree of variability between patients, and investigate factors that may be related to C-peptide preservation or loss. We found that 93% of individuals have detectable C-peptide 2 years from diagnosis. In 11% of subjects, there was no significant fall from baseline by 2 …

Locating And Protecting Facilities Subject To Random Disruptions And Attacks, Hugh Medal

Graduate Theses and Dissertations

Recent events such as the 2011 Tohoku earthquake and tsunami in Japan have revealed the vulnerability of networks such as supply chains to disruptive events. In particular, it has become apparent that the failure of a few elements of an infrastructure system can cause a system-wide disruption. Thus, it is important to learn more about which elements of infrastructure systems are most critical and how to protect an infrastructure system from the effects of a disruption. This dissertation seeks to enhance the understanding of how to design and protect networked infrastructure systems from disruptions by developing new mathematical models and …

Understanding The Pathoecological Relationship Between Ancient Diet And Modern Diabetes Through Coprolite Analysis: A Case Example From Antelope Cave, Mojave County, Arizona, Karl J. Reinhard, Keith L. Johnson, Sara Leroy-Toren, Kyle Wieseman, Isabel Teixeira-Santos, Mônica Vieira

School of Natural Resources: Faculty Publications

The elevated prevalence of non-insulin-dependent diabetes mellitus (NIDDM) in Native Americans of the Southwest has been explained by several authors in terms of a dietary change from preindustrial traditional foods to modern foods. Physiology adapted to traditional foods became deleterious during the process of modernization. Although several versions of this hypothesis exist, they all relate to the rise in modern NIDDM with change from prehistoric subsistence practices to modern dietary practices. This is especially true for the Southwestern desert tribes of Arizona and New Mexico. Coprolite analysts have been recovering the sort of data needed by diabetes researchers to explore …

Influenza Exposure In United States Feral Swine Populations, Jeffrey S. Hall, Richard B. Minnis, Tyler A. Campbell, Scott Barras, Randy W. Deyoung, Kristy Pabilonia, Michael L. Avery, Heather Sullivan, Larry Clark, Robert G. Mclean

United States Department of Agriculture Wildlife Services: Staff Publications

Swine play an important role in the disease ecology of influenza. Having cellular receptors in common with birds and humans, swine provide opportunities for mixed infections and potential for genetic re-assortment between avian, human, and porcine influenza. Feral swine populations are rapidly expanding in both numbers and range and are increasingly coming into contact with waterfowl, humans, and agricultural operations. In this study, over 875 feral swine were sampled from six states across the United States for serologic evidence of exposure to influenza. In Oklahoma, Florida, and Missouri, USA, no seropositive feral swine were detected. Seropositive swine were detected in …

Scwds Briefs: Volume 28, Number 2 (July 2012), Jeanenne Brewton, Michael J. Yabsley

Southeastern Cooperative Wildlife Disease Study: Publications

CWD News, July 2012

Does Heat + Drought = HD?

Cats on Candid Camera

Gray Bats and WNS

California or Bust

Recent SCWDS Publications Available

Crystal Structures Of Trypanosoma Cruzi Udp-Galactopyranose Mutase Implicate Flexibility Of The Histidine Loop In Enzyme Activation, Richa Dhatwalia, Harkewal Singh, Michelle Oppenheimer, Pablo Sobrado, John J. Tanner

Chemistry Faculty Research & Creative Works

Chagas disease is a neglected tropical disease caused by the protozoan parasite Trypanosoma cruzi. Here we report crystal structures of the galactofuranose biosynthetic enzyme UDP-galactopyranose mutase (UGM) from T. cruzi, which are the first structures of this enzyme from a protozoan parasite. UGM is an attractive target for drug design because galactofuranose is absent in humans but is an essential component of key glycoproteins and glycolipids in trypanosomatids. Analysis of the enzyme-UDP noncovalent interactions and sequence alignments suggests that substrate recognition is exquisitely conserved among eukaryotic UGMs and distinct from that of bacterial UGMs. This observation has implications for inhibitor …

Selective Impact Of Hiv Disease Progression On The Innate Immune System In The Human Female Reproductive Tract., Timothy Lahey, Mimi Ghosh, John V. Fahey, Zheng Sheng, Lucy R. Mukura, Yan Song, Susan Cu-Uvin, Kenneth H. Mayer, Peter F. Wright, John C. Kappes, Christina Ochsenbauer, Charles R. Wira

Epidemiology Faculty Publications

Background

We have previously demonstrated intrinsic anti-HIV activity in cervicovaginal lavage (CVL) from HIV-infected women with high CD4 counts and not on antiretroviral therapy. However, the impact of HIV disease progression on CVL innate immune responses has not been delineated.

Methods

CVL from 57 HIV-infected women not on antiretroviral therapy were collected by washing the cervicovaginal area with 10 ml of sterile normal saline. We characterized subject HIV disease progression by CD4 count strata: >500 cells/µl, 200–500 cells/µl, or <200 cells/µl of blood. To assess CVL anti-HIV activity, we incubated TZM-bl cells with HIV plus or minus CVL. Antimicrobials, cytokines, chemokines and anti-gp160 HIV IgG antibodies were measured by ELISA and Luminex.

Results

CVL exhibited broad anti-HIV activity against multiple laboratory-adapted and transmitted/founder (T/F) viruses, with anti-HIV activity ranging from 0 to 100% …

Modeling The Effect Of Environmental Factors On The Spread Of Bacterial Disease In An Economically Structured Population, Ram Naresh, Surabhi Pandey

Applications and Applied Mathematics: An International Journal (AAM)

We have proposed and analyzed a nonlinear mathematical model for the spread of bacterial disease in an economically structured population (rich and poor) including the role of vaccination. It is assumed that rich susceptible get infected through direct contact with infectives in the same class and with infectives from the poor class who work as service providers in the houses of rich people, living in much cleaner environment. The susceptible in the poor class are assumed to become infected through direct contact with infectives in the same class as well as by bacteria present in their own environment, degraded due …

A Mathematical Study On The Dynamics Of An Eco-Epidemiological Model In The Presence Of Delay, T. K. Kar, Prasanta K. Mondal

Applications and Applied Mathematics: An International Journal (AAM)

In the present work a mathematical model of the prey-predator system with disease in the prey is proposed. The basic model is then modified by the introduction of time delay. The stability of the boundary and endemic equilibria are discussed. The stability and bifurcation analysis of the resulting delay differential equation model is studied and ranges of the delay inducing stability as well as the instability for the system are found. Using the normal form theory and center manifold argument, we derive the methodical formulae for determining the bifurcation direction and the stability of the bifurcating periodic solution. Some numerical …

Modeling And Analysis Of The Spread Of An Infectious Disease Cholera With Environmental Fluctuations, Manju Agarwal, Vinay Verma

Applications and Applied Mathematics: An International Journal (AAM)

A nonlinear delayed mathematical model with immigration for the spread of an infectious disease cholera with carriers in the environment is proposed and analyzed. It is assumed that all susceptible are affected by carrier population density. The carrier population density is assumed to follow the logistic model and grows due to conducive human population density related factors. The model is analyzed by stability theory of differential equations and computer simulation. Both the disease-free (DFE), (CFE) and endemic equilibria are found and their stability investigated. Bifurcation analyses about endemic equilibrium are also carried out analytically using the theory of differential equations. …

Spatial Ecology Of Urban Raccoons In Northeastern Ohio: Implications For Oral Rabies Vaccination, Are R. Berentsen, Mike R. Dunbar, Chadd E. Fitzpatrick, W. David Walter

The Prairie Naturalist

In 1977, rabies was detected in a raccoon (Procyon lotor) in West Virginia, and since the mid-1980s raccoon variant rabies has spread throughout the eastern United States and moved west as far as the eastern edge of Cleveland, Ohio. The primary tool to combat this spread is the distribution of oral rabies vaccine (ORV) baits. A thorough knowledge of raccoon space use is critical in determining bait placement, particularly in urban areas. We monitored nine raccoons in urban areas of Cleveland, Ohio, calculated home range sizes, monitored raccoon movement with respect to potential movement barriers, and used resource selection functions …