Digital Commons Network^™

Modeling Of Realistic Heart Electrical Excitation Based On Dti Scans And Modified Reaction Diffusion Equation, Ihab Elaff

Turkish Journal of Electrical Engineering and Computer Sciences

A new method is proposed for modeling realistic heart activation using diffusion tensor imaging (DTI) scans based on biological properties of its tissues in addition to the working methodology of the DTI scanner. Modeling of the excitation propagation inside the heart is initiated by applying activation at only one pacing site at the root of the conduction network. The excitation propagation has been accomplished based on a proposed conduction system that is extracted from DTI heart scans and a modified version of monodomain reaction diffusion equation (RDE) that considers the heart inhomogeneous--anisotropic material. The Aliev--Panfilov method was used to model …

Purification Protocol Development And Analysis Of Binding Properties Of Calmodulin Collagen-Like Protein, Patrick P. Boddie

Honors Theses

Calmodulin is an intensely studied, intracellular, calcium-binding protein that is involved in diverse physiological processes. When bound to calcium, calmodulin undergoes a conformational change that allows it to bind specific target peptides with high affinity, one being the calmodulin binding region of myosin light chain kinase, herein called M13. This high affinity, calcium dependent association has made it a desirable choice for use in a biomaterial for drug delivery for non-steroidal anti- inflammatory drugs (NSAIDs). Two artificial genes have been designed by our lab for use in the proposed biomaterial: calmodulin collagen-like protein (CCLP), a construct composed of two calmodulin …

Reduced Graphene Oxide-Modified Screen-Printed Carbon Electrode For Determination Of Homocysteine Using Catechol, Suchapa Naranaruemol

Chulalongkorn University Theses and Dissertations (Chula ETD)

Homocysteine (Hcy), also known as 2-amino-4-mercaptobutyric acid, is a biomarker that is directly associated with an increased risk of cardiovascular diseases (CVDs). In this work, catechol (CA), which is redox active, had been used as an electron transfer mediator to facilitate the oxidation of Hcy. Typically, CA was first electrochemically immobilized onto the surface of screen-printed carbon electrode; however, the obtained CA-functionalized electrode did not show the electrocatalytic activity towards the detection of Hcy. Therefore, the deter– mination of Hcy was investigated in the solution containing CA using differential pulse voltammetry (DPV) at the reduced graphene oxide-modified screen-printed carbon electrode …

Pm10 And Pm2.5 Concentrations In Bangkok Over 10 Years And Implications For Air Quality, Tin Thongthammachart

Chulalongkorn University Theses and Dissertations (Chula ETD)

Atmospheric particulate matter particles with a diameter less than 10 micron (PM10) and less than 2.5 micron (PM2.5) have been adverse human health effect. Ambient air pollution data in Central Business District (CBD) of Bangkok monitored by Pollution Control Department and Bangkok Metropolitan Administration were collected over ten years in Bangkok from 2008 to 2017. Trend of the particulate matter concentrations data were investigated over ten year for implications of activities related to air pollution. Daily average air pollution data between year 2015 and year 2017 were used as the dependent variables to develop mathematic models with multiple linear regression …

Quantifying Excess Deaths Related To Heatwaves Under Climate Change Scenarios: A Multicountry Time Series Modelling Study, Yuming Guo, Antonio Gasparrini, Shanshan Li, Francesco Sera, Ana Maria Vicedo-Cabrera, Micheline De Sousa Zanotti Stagliorio Coêlho, Paulo Hilário Nascimento Nascimento Saldiva, Éric Lavigne, Benjawan Tawatsupa, Kornwipa Punnasiri, Ala Overcenco, Patricia Matus Correa, Nicolas Valdes Ortega, Haidong Kan, Samuel Osorio, Jouni J.K. Jaakkola, Niilo R.I. Ryti, Patrick J. Goodman, Ariana Zeka, Paola Michelozzi, Matteo Scortichini, Masahiro Hashizume, Honda, Yasushi Honda, Yasushi, Xerxes T. Seposo, Ho Young Kim, Aurelio Tobías, Carmen Iñiguez Fernández, Bertil Forsberg, Daniel Oudin Åström, Guo, Yue Leon Guo, Yue Leon, Bing Yu Chen, Antonella Zanobetti, Joel D. Schwartz, Tranngoc Ngoc Dang, Dung Do Van, Michelle L. Bell, Ben G. Armstrong, Ebi, Kristie L. Ebi, Kristie L., Shilu Tong

Articles

Background: Heatwaves are a critical public health problem. There will be an increase in the frequency and severity of heatwaves under changing climate. However, evidence about the impacts of climate change on heatwave-related mortality at a global scale is limited. Methods and findings: We collected historical daily time series of mean temperature and mortality for all causes or nonexternal causes, in periods ranging from January 1, 1984, to December 31, 2015, in 412 communities within 20 countries/regions. We estimated heatwave–mortality associations through a two-stage time series design. Current and future daily mean temperature series were projected under four scenarios of …

Toward Improving Metalloenzyme Inhibitor Design: A Thermodynamic Study Of Small Molecule Interactions With Copper(Ii), Cobalt(Ii) And Manganese(Ii), Fatimah Aldakheel

College of Science and Health Theses and Dissertations

This work aimed at understanding the interactions of 1) three physiologically relevant transition metal ions copper(II), cobalt(II) and manganese(II) with five tri- or tetra-dentate metal chelators (ligand or L) and 2) the resulting ML complexes with two known metalloenzyme inhibitors, 8-hydroxyquinoline (8-HQ) and acetohydroxamic acid (AHA). The ultimate goal of the work was to identify ligands that can form enzyme active site M²⁺ structural mimetics capable of interacting with metalloenzyme active site inhibitors. The ligands studied were N-(2-(1-methylimidazolyl)methyl)iminodiacetic acid (DA2Im), nitrilotriacetic acid (NTA), tris(2-aminoethyl)amine (TREN), tris(2-pyridylmethyl)amine (TPA), and bis(2-picolyl)amine (BPA) and they were chosen to mimic the coordination environment …

Ligand Modulation Of Sidechain Dynamics In A Wild-Type Human Gpcr, Lindsay D. Clark, Igor Dikiy, Karen Chapman, Karin Ej Rodstrom, James Aramini, Michael V. Levine, George Khelashvili, Soren Gf Rasmussen, Kevin H. Gardner, Daniel M. Rosenbaum

Publications and Research

GPCRs regulate all aspects of human physiology, and biophysical studies have deepened our understanding of GPCR conformational regulation by different ligands. Yet there is no experimental evidence for how sidechain dynamics control allosteric transitions between GPCR conformations. To address this deficit, we generated samples of a wild-type GPCR (A2AR) that are deuterated apart from 1H/13C NMR probes at isoleucine d1 methyl groups, which facilitated 1H/13C methyl TROSY NMR measurements with opposing ligands. Our data indicate that low [Na+] is required to allow large agonist-induced structural changes in A2AR, and that patterns of sidechain dynamics substantially differ between agonist (NECA) and …

Computational Modeling For Abnormal Brain Tissue Segmentation, Brain Tumor Tracking, And Grading, Syed Mohammad Shamin Reza

Electrical & Computer Engineering Theses & Dissertations

This dissertation proposes novel texture feature-based computational models for quantitative analysis of abnormal tissues in two neurological disorders: brain tumor and stroke. Brain tumors are the cells with uncontrolled growth in the brain tissues and one of the major causes of death due to cancer. On the other hand, brain strokes occur due to the sudden interruption of the blood supply which damages the normal brain tissues and frequently causes death or persistent disability. Clinical management of these brain tumors and stroke lesions critically depends on robust quantitative analysis using different imaging modalities including Magnetic Resonance (MR) and Digital Pathology …

A Numerical Study Of The Interaction Between One Dimensional Carbyne Chain And Single Stranded Dna, Zeina Salman

Graduate Theses and Dissertations

resolution at the single nucleotide level when developing DNA sequencers. The purpose of this research was to numerically study the electrical properties associated with the interaction between 1D carbon chain, known as carbyne, and ssDNA. First, the electrical properties of the carbyne chain were calculated. Second, the electrical properties of the carbyne chain were calculated in the presence of different ssDNA bases. Analyzing the differences between the two cases led to determining the effects of these different bases on the electrical properties. The numerical simulation approach conducted in this research was based on the first-principle simulation. The first-principle simulation was …

On The Structure And Properties Of S-Nitrosated Cysteine Models: A Computational Study, Dmitry Khomyakov

Dissertations (1934 -)

S-Nitrosation of cysteine (Cys) residues, a covalent modification of its S atom by NO group, is a major post-translational modification of proteins. Despite the importance of S-nitrosoproteins in numerous physiological processes, lability of the S-nitrosothiol (-SNO) group hinders the research progress. In this work, computational chemistry methods were applied to S-nitrosated cysteine (CysNO) models to gain a deeper insight into its structure and properties. First, we obtained the most accurate at the moment computational estimation of the molecular structure and properties of CH3SNO model molecule using Feller-Peterson-Dixon (FPD) ab initio protocol. The S–N bond length in cis- CH3SNO is calculated …

Semantic Inference On Clinical Documents: Combining Machine Learning Algorithms With An Inference Engine For Effective Clinical Diagnosis And Treatment, Shuo Yang, Ran Wei, Jingzhi Guo, Lida Xu

Information Technology & Decision Sciences Faculty Publications

Clinical practice calls for reliable diagnosis and optimized treatment. However, human errors in health care remain a severe issue even in industrialized countries. The application of clinical decision support systems (CDSS) casts light on this problem. However, given the great improvement in CDSS over the past several years, challenges to their wide-scale application are still present, including: 1) decision making of CDSS is complicated by the complexity of the data regarding human physiology and pathology, which could render the whole process more time-consuming by loading big data related to patients; and 2) information incompatibility among different health information systems (HIS) …

Neurosecurity For Brainware Devices, Brian Cusack, Kaushik Sundararajan, Reza Khaleghparast

Australian Information Security Management Conference

Brainware has a long history of development down into the present day where very simple and usable devices are available to train for the control of games and services. One of the big areas of application has been in the health sciences to provide compensatory control to humans who may lack the usual capabilities. Our concern has been the protection of information in brainware so that a human intention may have confidentiality, integrity, and accessibility to the required implementation mechanisms for services. The research question was: What are the consequences of security failure in brainware? Our research tested a brainware …

Error Aggregation In The Reengineering Process From 3d Scanning To Printing, Jennifer G. Michaeli, Matthew C. Degroff, Roman C. Roxas

Engineering Technology Faculty Publications

This work aims to study the aggregation of dimensional errors in the reengineering processes using 3D scanning and printing without initial design drawings. A 57-tooth spur gear is used as an example to facilitate the discussion. Two approaches are investigated. The first one builds the gear model based upon measurement taken from a caliper, and the second approach uses a 3D scanner to collect geometry data. Dimensional errors in each stage of these two approaches are investigated. Particular attention is paid to the geometry data flow in the reengineering process from data acquisition and editing to model construction. Recommendations are …

Computational Fluid Dynamics In A Terminal Alveolated Bronchiole Duct With Expanding Walls: Proof-Of-Concept In Openfoam, Jeremy Myers

Theses and Dissertations

Mathematical Biology has found recent success applying Computational Fluid Dynamics (CFD) to model airflow in the human lung. Detailed modeling of flow patterns in the alveoli, where the oxygen-carbon dioxide gas exchange occurs, has provided data that is useful in treating illnesses and designing drug-delivery systems. Unfortunately, many CFD software packages have high licensing fees that are out of reach for independent researchers. This thesis uses three open-source software packages, Gmsh, OpenFOAM, and ParaView, to design a mesh, create a simulation, and visualize the results of an idealized terminal alveolar sac model. This model successfully demonstrates that OpenFOAM can be …

Mathematical Models For Treatment Time Of Pathogenic Infection In Blood After Antibiotics Administration, Panit Suavansri

Chulalongkorn University Theses and Dissertations (Chula ETD)

The objective in this thesis is to create a mathematical model to predict the period of time needed to clear out the pathogens from the bloodstream after the patient receives certain antibiotics. The result will lead to the time where the drug administration can be terminated. This research is to compute the densities of bacteria and malaria in bloodstream at any given time and to compare this level with the actual results of the patient's blood sampling, which was sent to the laboratory for investigation. The laboratory process of the blood sampling will usually take more than 2-3 days to …

Gastrointestinal Health As A Stimulus For Native American Attraction To Medicinal Asteraceae And Further Implications For Human Evolution, Christopher David Stiegler

Graduate Theses and Dissertations

The Asteraceae, or the daisy family, is the largest family of flowering plants in the world, and its ethnobotanical, medical, and economic value is readily apparent cross-culturally. The aim of this thesis is to examine why constituent genera of the Aster family have remained such an integral part of human medicinal plant knowledge, and thereby to reveal any potential physiological, biological, or evolutionary mechanisms underlining human patterns of use regarding the Asteraceae. The present study focuses specifically on Native American plant knowledge made available by the expansive database in the works Daniel Moerman (Moerman 2003). Frequencies of plant use and …

Human Exposure Modeling Using Sheds, Luther Smith, William Graham Glen

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Recent Insights Into Nitrite Signaling Processes In Blood, Christine C. Helms, Xiaohua Liu, Daniel B. Kim-Shapiro

Physics Faculty Publications

Nitrite was once thought to be inert in human physiology. However, research over the past few decades has established a link between nitrite and the production of nitric oxide (NO) that is potentiated under hypoxic and acidic conditions. Under this new role nitrite acts as a storage pool for bioavailable NO. The NO so produced is likely to play important roles in decreasing platelet activation, contributing to hypoxic vasodilation and minimizing blood-cell adhesion to endothelial cells. Researchers have proposed multiple mechanisms for nitrite reduction in the blood. However, NO production in blood must somehow overcome rapid scavenging by hemoglobin in …

Exogenous Polyunsaturated Fatty Acid (Pufa) Scavenging Affects Phospholipid Profiles And Virulence Phenotypes In Vibrio Cholerae And Vibrio Parahaemolyticus, Anna Moravec

Honors Theses

AIM: This research had two primary objectives. First, this study sought to determine whether or not exposing Vibrio cholerae and Vibrio parahaemolyticus to polyunsaturated fatty acids (PUFAs) would lead to changes in their respective phospholipid profiles. Secondly, if membrane remodeling occurred, this study sought to determine the impact of membrane modifications on bacterial fitness by evaluating their effect on membrane permeability, biofilm formation, and response to stresses. METHODS: The Bligh and Dyer method was used to extract bacterial lipids, which were subsequently analyzed via thin-layer chromatography (TLC). The effect of fatty acids on bacterial fitness was assessed using stress, biofilm, …

Issue 11

The Synapse: Intercollegiate science magazine

No abstract provided.

Analysis Of Software Design Patterns In Human Cognitive Performance Experiments, Alexander C. Roosma

Theses and Dissertations

As Air Force operations continue to move toward the use of more autonomous systems and more human-machine teaming in general, there is a corresponding need to swiftly evaluate systems with these capabilities. We support this development through software design improvements of the execution of human cognitive performance experiments. This thesis sought to answer the following two research questions addressing the core functionality that these experiments rely on for execution and analysis: 1) What data infrastructure software requirements are necessary to execute the experimental design of human cognitive performance experiments? 2) How effectively does a central data mediator design pattern meet …

Design, Synthesis And Screening Of Peptidomimetics For Anticancer And Antiviral Drug Candidates, Yi Liang

USF Tampa Graduate Theses and Dissertations

The high demand of novel peptide and peptidomimetics based on the amount of genomic and proteomic data need be matched by synthesis and screening. The design and synthesis of peptide and peptidomimetics are so important because the peptide and protein-protein interaction play a key role in molecule recognition and signaling. The modified peptides have better stability and pharmacokinetic properties which may be guided by rational design and molecular modeling. Now many organic and medicinal chemists have chosen peptide and peptidomimetics as potential drug candidates for many targets.

In this dissertation, research efforts in design and synthesis of cyclic peptides with …

Assessing The Effectiveness Of A Fingerprint Biometric And A Biometric Personal Identification Number (Bio-Pin™) When Used As A Multi-Factor Authentication Mechanism, Robert B. Batie

CCAC Theses and Dissertations

The issue of traditional user authentication methods, such as username/passwords, when accessing information systems, the Internet, and Web-based applications still pose significant vulnerabilities. The problem of user authentication including physical and logical access appears to have limited, if any, coverage in research from the perspective of biometric as ‘something the user knows.’ Previous methods of establishing ones’ identity by using a password, or presenting a token or identification (ID) card are vulnerable to circumvention by misplacement or unauthorized sharing. The need for reliable user authentication techniques has increased in the wake of heightened concerns about information security and rapid advancements …

Open Educational Resources Textbook List, Zachariah Claybaugh, Chelsea Stone

Librarian Publications

Discipline specific OER textbook list for departments at SHU, compiled by Zach Claybaugh and Chelsea Stone.

Front Matter

The Synapse: Intercollegiate science magazine

No abstract provided.

Determination Of Total And D-Amino Acid Content In Mice Brain Tissue By Achiral-Chiral Heart-Cutting Two-Dimensional Liquid Chromatography: Diagnostic And Clinical Relevance And A Comparison Between Non-Perfused And Perfused Tissue, Curran Parpia

Chemistry & Biochemistry Theses - Archive

A heart-cutting two dimensional liquid chromatographic method for the quantification of free amino acid enantiomers from mouse brain tissue is demonstrated. Evidence to support the occurrence of D-amino acids in significant concentrations in physiological samples has spurred studies toward the elucidation of their importance and function. In this work, the level and regional distribution of select amino acids were determined by achiral-chiral LC/LC. Additionally, the effect of tissue perfusion on these levels was investigated. The free amino acid extracts were analyzed as their 9-fluorenylmethyloxycarbonyl derivatives and separated in the reverse phase mode on superficially porous C18. In the second dimension, …

Assessing A Monitoring Scale Of Physiological Health And Risk Assessment Among Those Exposed To Heated Environments: A Brief Report, Corey A. Peacock, Ellen L. Glickman, Gabriel J. Sanders, Yong Suk Seo, Brandon S. Pollock, Keith J. Burns, Lynn Kakos, John Gunstad

Journal of Human Performance in Extreme Environments

Background: Prevention of heat illness is of considerable medical interest within the field of occupational work. There are many established methods of perceptual health assessment; however, many are rather unpractical and timely. The objective was to improve the practicality and timeliness of perceptual physiological monitoring; a Heat Thermal Sensation scale has been developed. The usefulness of the scale was assessed on its ability to monitor physiological variable. Materials and Methods: Ten apparently healthy individuals performed physically exerting activity while exposed to 37 °C. Sensation and physiology were measured throughout. Results: The perceptual monitoring scale demonstrated weak positive correlations with human …

Prediction: The Quintessential Model Validation Test, Wayne Wakeland

Systems Science Friday Noon Seminar Series

It is essential to objectively test how well policy models predict real world behavior. The method used to support this assertion involves the review of three SD policy models emphasizing the degree to which the model was able to fit the historical outcome data and how well model-predicted outcomes matched real world outcomes as they unfolded. Findings indicate that while historical model agreement is a favorable indication of model validity, the act of making predictions without knowing the actual data, and comparing these predictions to actual data, can reveal model weaknesses that might be overlooked when all of the available …

Seeing Your Face Is Not Enough: An Inertial Sensor-Based Liveness Detection For Face Authentication, Yan Li, Yingjiu Li, Qiang Yan, Hancong Kong, Robert H. Deng

Research Collection School Of Computing and Information Systems

Leveraging built-in cameras on smartphones and tablets, face authentication provides an attractive alternative of legacy passwords due to its memory-less authentication process. However, it has an intrinsic vulnerability against the media-based facial forgery (MFF) where adversaries use photos/videos containing victims' faces to circumvent face authentication systems. In this paper, we propose FaceLive, a practical and robust liveness detection mechanism to strengthen the face authentication on mobile devices in fighting the MFF-based attacks. FaceLive detects the MFF-based attacks by measuring the consistency between device movement data from the inertial sensors and the head pose changes from the facial video captured by …

Suspension Model For Blood Flow Through A Tapering Catheterized Inclined Artery With Asymmetric Stenosis, Devajyoti Biswas, Moumita Paul

Applications and Applied Mathematics: An International Journal (AAM)

We intend to study a particle fluid suspension model for blood flow through an axially asymmetric but radially symmetric mild stenosis in the annular region of an inclined tapered artery and a co-axial catheter in a suitable flow geometry has been considered to investigate the influence of velocity slip at the stenotic wall as well as hematocrit, shape parameter. The model also includes the tapering effect and inclination of the artery. Expressions for the flow variables have been derived analytically and their variations with various flow parameters are represented graphically. The results for the different values of the parameters involved …