Digital Commons Network^™

On Autopilot? An Empirical Study Of Human-Ai Teaming And Review Practices In Open Source, Haoyu Gao, Peerachai Banyongrakkul, Hao Guan, Mansooreh Zahedi, Christoph Treude

Research Collection School Of Computing and Information Systems

Large Language Models (LLMs) increasingly automate software engineering tasks. While recent studies highlight the accelerated adoption of “AI as a teammate” in Open Source Software (OSS), developer interaction patterns remain under-explored. In this work, we investigated project-level guidelines and developers’ interactions with AI-assisted pull requests (PRs) by expanding the AIDev dataset to include finer-grained contributor code ownership and a comparative baseline of human-created PRs. We found that over 67.5% of AI-co-authored PRs originate from contributors without prior code ownership. Despite this, the majority of repositories lack guidelines for AI-coding agent usage. Notably, we observed a distinct interaction pattern: AI-co-authored PRs …

Structural Silence: When Ai Infrastructure Fails Speakers Of Underrepresented Languages, Avijit Roy, Proma Roy

Publications and Research

Artificial intelligence tools for education and language support are increasingly framed as scalable responses to access gaps in under-resourced communities. Yet the infrastructure underlying these tools—training corpora, tokenization schemes, evaluation benchmarks, and deployment architectures—encodes a set of assumptions that systematically disadvantages speakers of underrepresented languages before a single model is trained. This paper examines those assumptions through the lens of Bengali, one of the world’s most widely spoken languages with roughly 285 million speakers (Ethnologue, 2025; International Communication and Leadership School, 2026), and the structural barriers that emerge when attempting to build AI-assisted educational tools for Bengali-speaking learners in low-connectivity …

Ac Magnetic Measurements With A Self-Oscillating Lc Circuit And Its Application To University Education, Harshit Agarwal, Oleksandra Uralska, Jasmin Billingsley, Maxim Yamilov, Hyunsoo Kim

Physics Faculty Research & Creative Works

Editor's Note: This paper is a welcome tutorial on a technique for AC magnetometry, allowing the measurement of a sample's magnetic susceptibility with considerable sensitivity. The authors present a low-cost setup based on an LC self-oscillator circuit, which has an operating frequency that is rather sensitive to the susceptibility of a sample introduced within its inductor. After characterizing the performance of the circuit, data taken on a high-temperature superconducting sample are presented, demonstrating how the samples superconducting transition can be detected by this noncontact magnetic method, independent of the usual resistivity-based detection. This project will be of interest to instructors …

Weakly Supervised Video Anomaly Detection And Localization With Spatio-Temporal Prompts, Peng Wu, Xuerong Zhou, Guansong Pang, Zhiwei Yang, Qingsen Yan, Peng Wang, Yanning Zhang

Research Collection School Of Computing and Information Systems

Current weakly supervised video anomaly detection (WSVAD) task aims to achieve frame-level anomalous event detection with only coarse video-level annotations available. Existing works typically involve extracting global features from full-resolution video frames and training frame-level classifiers to detect anomalies in the temporal dimension. However, most anomalous events tend to occur in localized spatial regions rather than the entire video frames, which implies existing frame-level feature based works may be misled by the dominant background information and lack the interpretation of the detected anomalies. To address this dilemma, this paper introduces a novel method called STPrompt that learns spatio-temporal prompt embeddings …

Portrait Shadow Removal Via Self-Exemplar Illumination Equalization, Qian Huang, Cheng Xu, Guiqing Li, Ziheng Wu, Shengxin Liu, Shengfeng He

Research Collection School Of Computing and Information Systems

We introduce the Self-Exemplar Illumination Equalization Network, designed specifically for effective portrait shadow removal. The core idea of our method is that partially shadowed portraits can find ideal exemplars within their non-shadowed facial regions. Rather than directly fusing two distinct classes of facial features, our approach utilizes non-shadowed regions as an illumination indicator to equalize the shadowed regions, generating deshadowed results without boundary-merging artifacts. Our network comprises cascaded Self-Exemplar Illumination Equalization Blocks (SExmBlock), each containing two modules: a self-exemplar feature matching module and a feature-level illumination rectification module. The former identifies and applies internal illumination exemplars to shadowed areas, producing …

Distributional Vision-Language Alignment By Cauchy-Schwarz Divergence, Wenzhe Yin, Zehao Xiao, Pan Zhou, Shujian Yu, Jiayi Shen, Jan-Jakob Sonke, Stratis Gavves

Research Collection School Of Computing and Information Systems

Vision-language alignment is crucial for various downstream tasks such as cross-modal generation and retrieval. Previous multimodal approaches like CLIP utilize InfoNCE to maximize mutual information, primarily aligning pairwise samples across modalities while overlooking distributional differences. In addition, InfoNCE has inherent conflict in terms of alignment and uniformity in multimodality, leading to suboptimal alignment with modality gaps. To overcome the limitations, we propose CS-Aligner, a novel framework that performs distributional vision-language alignment by integrating Cauchy-Schwarz (CS) divergence with mutual information. CS-Aligner captures both the global distribution information of each modality and the pairwise semantic relationships. We find that the CS divergence …

Managing Reproducibility Debt In Scientific Software: A Practical Framework, Zara Hassan, Christoph Treude, Graham Williams, Michael Norrish, Alex Potanin

Research Collection School Of Computing and Information Systems

Scientific software includes end-user applications, modelling tools, research software for publications, and production systems for real users. It plays a key role across various scientific disciplines by enabling large-scale computation, simulation, and data analysis. Unlike commercial software, scientific software is often developed in dynamic research environments with limited engineering practices, documentation, or testing. This makes it fragile and difficult to reproduce results, even when code and data are available, conditions in which Reproducibility Debt (RpD) accumulates. This paper presents the Reproducibility Debt Management Framework (RpD-MF), which is grounded in evidence from a systematic literature review, practitioner interviews, and a global …

Patchgpt: Multi-Agent Patch Backporting Without Model Fine-Tuning, Ye Liu, Ruidong Han, Chengyan Ma, Yuqing Niu, David Lo

Research Collection School Of Computing and Information Systems

Patch backporting is crucial and prevalent in the maintenance of modern open-source software such as Linux kernels and forked repositories. However, porting patches across program versions remains a challenging problem due to the complexity of synergizing diverse patches with divergent program versions. In this paper, we propose PatchGPT, an agentic patch backporting framework for fine-grained patch generation. PatchGPT encompasses three agents: Miner for decomposing a sequence of atomic change steps as the original patch plan, Adapter for adapting the patch plan, and Executor for executing the adapted patch plan according to predefined change semantics. We conduct experiments on the PPatHF’s …

Understanding Codebase Like A Professional! Human-Ai Collaboration For Code Comprehension, Jie Gao, Yue Xue, Xiaofei Xie, Junming Cao, Soemin Thant, Erika Lee, Bowen Xu

Research Collection School Of Computing and Information Systems

Understanding an unfamiliar codebase is an essential task for developers in various scenarios, such as during the onboarding process. Especially when the codebase is large and time is limited, achieving a decent level of comprehension remains challenging for both experienced and novice developers, even with the assistance of large language models (LLMs). Existing studies have shown that LLMs often fail to support users in understanding code structures or to provide user-centered, adaptive, and dynamic assistance in real-world settings.To address this, we propose learning from the perspective of a unique role, code auditors, whose work often requires them to quickly familiarize …

Dendrimer Nanogels With Built-In Free Radical Scavenging Enable Efficient Topical Delivery Of A Hydrophilic Antioxidant To Restore Lens Redox Balance For Cataract Treatment, Lin Qi, Huari Kou, Anna Chernatynskaya, Da Huang, Vimalin Jeyalatha Mani, Humeyra Karacal, Nuran Ercal, Hu Yang

Chemistry Faculty Research & Creative Works

Cataract is a leading cause of vision impairment worldwide and are primarily caused by oxidative stress that damages and aggregates lens proteins, leading to lens opacification. However, the eye's anatomical barriers limit the penetration and bioavailability of antioxidant therapies. To address this challenge, a dendrimer-based nanogel with a built-in reactive oxygen species (ROS)-scavenging capability developed by us was employed to deliver the antioxidant N-acetylcysteine (NAC) to the lens. NAC was loaded into a generation-5 PEGylated poly(amidoamine) dendrimer (G5-PEG-TK, termed the GPT) nanogel. The resulting NAC-GPT was characterized for its ROS-scavenging activity, bioavailability, and corneal permeability. The efficacy of NAC-GPT was …

Trustgen: A Platform Of Dynamic Benchmarking On The Trustworthiness Of Generative Foundation Models, Yue Huang, Et. Al

Research Collection School Of Computing and Information Systems

Generative foundation models (GenFMs), such as large language models and text-to-image systems, have demonstrated remarkable capabilities in various downstream applications. As they are increasingly deployed in high-stakes applications, assessing their trustworthiness has become both a critical necessity and a substantial challenge. Existing evaluation efforts are fragmented, rapidly outdated, and often lack extensibility across modalities. This raises a fundamental question: how can we systematically, reliably, and continuously assess the trustworthiness of rapidly advancing GenFMs across diverse modalities and use cases? To address these gaps, we introduce TrustGen, a dynamic and modular benchmarking system designed to systematically evaluate the trustworthiness of GenFMs …

Intelligent Deep Learning-Based Sign Language Translation System, Nada Rasem Shahin

Dissertations

The Deaf and Hard of Hearing (DHH) community uses sign language as a primary means of communication. However, the shortage of sign language interpreters and the existence of hundreds of sign languages limit accessibility and inclusion. Sign Language Machine Translation (SLMT) systems present a promising solution for bridging the communication gap between the DHH and the hearing individuals, supporting inclusive societies. In smart cities, such systems play an essential role in improving the quality of life on a community level. In particular, as the population’s well-being is critical, developing intelligent assistive technologies, such as SLMT systems, is necessary to provide …

Causality-Aware Safety Testing For Autonomous Driving Systems, Wenbing Tang, Mingfei Cheng, Renzhi Wang, Yuan Zhou, Chengwei Liu, Yang Liu, Zuohua Ding

Research Collection School Of Computing and Information Systems

Simulation-based testing is essential for evaluating the safety of Autonomous Driving Systems (ADSs). Comprehensive evaluation requires testing across diverse scenarios that can trigger various types of violations under different conditions. While existing methods typically focus on individual diversity metrics, such as input scenarios, ADS-generated motion commands, and system violations, they often fail to capture the complex interrelationships among these elements. For instance, identical motion commands can produce different collision risks in varying scenes, and the same collision may result from different commands under different scenarios. This oversight leads to gaps in testing coverage, potentially missing critical issues in the ADS …

Developing Blockchain-Based Transparent E-Commerce Solutions For Danish Smes To Promote Sustainable Design Products, Somnath Mazumdar, Robert John Kauffman, Thomas Jensen, Raghava Rao Mukkamala, Jan Damsgaard

Research Collection School Of Computing and Information Systems

Typically, a firm's objectives include establishing consumer confidence, preserving its brand image, and developing a profitable business strategy. Consumers now place greater emphasis on the sustainability and transparency of their purchases. Given environmental and economic limitations, firms are often compelled to implement sustainable production methods. This is especially a struggle for small- and medium-sized enterprises (SMEs) with new technology, as it can increase their risk of failure. This has led to a problem for consumers, who must cross-check the sustainability-related claims of the firms they buy from. This is challenging because of limited process trace data and restricted enforcement capabilities. …

Dragging With Geometry: From Pixels To Geometry-Guided Image Editing, Xinyu Pu, Hongsong Wang, Jie Gui, Pan Zhou

Research Collection School Of Computing and Information Systems

Interactive point-based image editing serves as a controllable editor, enabling precise and flexible manipulation of image content. However, most drag-based methods operate primarily on the 2D pixel plane with limited use of 3D cues. As a result, they often produce imprecise and inconsistent edits, particularly in geometry-intensive scenarios such as rotations and perspective transformations. To address these limitations, we propose a novel geometry-guided drag-based image editing method—GeoDrag, which addresses three key challenges: 1) incorporating 3D geometric cues into pixel-level editing, 2) mitigating discontinuities caused by geometry-only guidance, and 3) resolving conflicts arising from multi-point dragging. Built upon a unified displacement …

Dreamcs: Geometry-Aware Text-To-3d Generation With Unpaired 3d Reward Supervision, Xiandong Zou, Ruihao Xia, Hongsong Wang, Pan Zhou

Research Collection School Of Computing and Information Systems

While text-to-3D generation has attracted growing interest, existing methods often struggle to produce 3D assets that align well with human preferences. Current preference alignment techniques for 3D content typically rely on hardly-collected preference-paired multi-view 2D images to train 2D reward models, when then guide 3D generation — leading to geometric artifacts, such as the Janus face problem and geometric incompleteness, due to their inherent 2D bias. To address these limitations, we construct 3D-MeshPref, the first large-scale unpaired 3D preference dataset, featuring diverse 3D meshes annotated by a large language model and refined by human evaluators. We then develop RewardCS, the …

Real-Time Motion-Controllable Autoregressive Video Diffusion, Kesen Zhao, Jiaxin Shi, Beier Zhu, Junbao Zhou, Xiaolong Shen, Yuan Zhou, Qianru Sun, Hanwang Zhang

Research Collection School Of Computing and Information Systems

Real-time motion-controllable video generation remains challenging due to the inherent latency of bidirectional diffusion models and the lack of effective autoregressive (AR) approaches. Existing AR video diffusion models are limited to simple control signals or text-to-video generation, and often suffer from quality degradation and motion artifacts in few-step generation. To address these challenges, we propose AR-Drag, the first RL-enhanced few-step AR video diffusion model for real-time image-to-video generation with diverse motion control. We first fine-tune a base I2V model to support basic motion control, then further improve it via reinforcement learning with a trajectory-based reward model. Our design preserves the …

Teamwise: Exploring Virtually Embodied Ai Facilitation For Video-Based Team Onboarding, Venkata Akhila Rani Obilisetty, Mikkeline Elleby, Anthony Tang, April Yi Wang

Research Collection School Of Computing and Information Systems

AI-mediated facilitation has emerged as a scalable approach to supporting onboarding and coordination in newly formed remote teams, yet existing systems are predominantly text-based. To explore how video-based, virtually embodied AI facilitators shape team experiences, we present TeamWise, which joins video-based onboarding meetings as an on-screen avatar. TeamWise guides teams through a structured facilitation flow of low-stakes activities to foster rapport, mutual awareness, and shared identity. While the overall sequence of activities and facilitation goals is predefined, the facilitator’s turn-by-turn utterances are generated dynamically by an LLM in response to participant input. We conducted a formative study of TeamWise to …

Reasoning On Time-Series For Financial Technical Analysis, Kelvin J. L. Koa, Jan Chen, Yunshan Ma, Huanhuan Zheng, Tat-Seng Chua

Research Collection School Of Computing and Information Systems

While Large Language Models have been used to produce interpretable stock forecasts, they mainly focus on analyzing textual reports but not historical price data, also known as Technical Analysis. This task is challenging as it switches between domains: the stock price inputs and outputs lie in the time-series domain, while the reasoning step should be in natural language. In this work, we introduce Verbal Technical Analysis (VTA), a novel framework that combine verbal and latent reasoning to produce stock time-series forecasts that are both accurate and interpretable. To reason over time-series, we convert stock price data into textual annotations and …

Autologger: A Multi-Agent Framework For The End-To-End Automated Logging, Renyi Zhong, Yintong Huo, Wenwei Gu, Yichen Li, Michael R. Lyu

Research Collection School Of Computing and Information Systems

Software logging is critical for system observability, yet developers face a dual crisis of costly overlogging and risky underlogging. Existing automated logging tools often overlook the fundamental whether-to-log decision and struggle with the composite nature of logging. In this paper, we propose AutoLogger, a novel hybrid framework that addresses the complete the end-to-end logging pipeline. AutoLogger first employs a fine-tuned classifier, the Judger, to accurately determine if a method requires new logging statements. If logging is needed, a multi-agent system is activated. The system includes specialized agents: a Locator dedicated to determining where to log, and a Generator focused on …

Context Engineering For Ai Agents In Open-Source Software, Seyedmoein Mohsenimofidi, Matthias Galster, Christoph Treude, Sebastian Baltes

Research Collection School Of Computing and Information Systems

GenAI-based coding assistants have disrupted software development. The next generation of these tools is agent-based, operating with more autonomy and potentially without human oversight. Like human developers, AI agents require contextual information to develop solutions that are in line with the standards, policies, and workflows of the software projects they operate in. Vendors of popular agentic tools (e.g., Claude Code) recommend maintaining version-controlled Markdown files that describe aspects such as the project structure, code style, or building and testing. The content of these files is then automatically added to each prompt. Recently, AGENTS.md has emerged as a potential standard that …

Who Said Cve? How Vulnerability Identifiers Are Mentioned By Humans, Bots, And Agents In Pull Requests, Pien Rooijendijk, Christoph Treude, Mairieli Wessel

Research Collection School Of Computing and Information Systems

Vulnerability identifiers such as CVE, CWE, and GHSA are standardised references to known software security issues, yet their use in practice is not well understood. This paper compares vulnerability ID use in GitHub pull requests authored by autonomous agents, bots, and human developers. Using the AIDev pop dataset and an augmented set of pull requests from the same repositories, we analyse who mentions vulnerability identifiers and where they appear. Bots account for around 69.1% of all mentions, usually adding few identifiers in pull request descriptions, while human and agent mentions are rarer but span more locations. Qualitative analysis shows that …

Personality Predictors Of Cybersecurity Vulnerability: Insights From Self-Reports And Stimulated Threat Scenarios, Saroja Roy Grandhi

Psychology Theses & Dissertations

In this cyber dependent and enabled era, understanding the role of human factors in digital security is essential. This study investigates the relationship between Big-Five personality traits and cybersecurity behaviors by examining both self-reported and stimulated behaviors in security threat scenarios. Participants completed validated questionnaires to report their personality traits, cybersecurity practices and engage in task-based stimulations to capture behaviors such as phishing detection, password creation, and response to security alerts. The study tested whether higher conscientiousness, openness, and agreeableness would be associated with stronger cybersecurity practices and smaller discrepancies between self-reported and observed behaviors. And, whether greater extraversion and …

Observational Diagnostics And Spectroscopic Detection Of Tropospheric Trace Gases And Oxidation Processes, Callum E. Flowerday

Theses and Dissertations

The troposphere is governed by photochemical and radical-mediated processes that control atmospheric oxidation capacity, secondary pollutant formation, and the chemical lifetime of gases. Quantitative understanding of these processes requires both robust observational frameworks capable of resolving complex precursor–product relationships and instrumentation with sufficient sensitivity and selectivity to detect reactive and low-concentration species. This dissertation advances atmospheric chemistry through the parallel development of quantitative observational methodologies and refined spectroscopic measurement techniques. The first component of this work evaluates atmospheric oxidation systems using long-term monitoring data and empirical diagnostics. Multi-year analyses of ozone and particulate matter trends were conducted to characterize variability …

A Systematic Review Of Mathematical Interpretations Of The Weton Marriage Tradition Within Islamic Cultural Contexts, Ratna Damayanti, Surya Sari Faradiba

Jurnal Pendidikan Sains

This study is grounded in the limited integration of mathematics, culture, and religion within academic discussions of local traditions, particularly the weton marriage calculation practice. It aims to explore the mathematical concepts embedded in weton calculations and to analyse these practices from an Islamic law perspective within an interdisciplinary framework. The study employs a Systematic Literature Review (SLR) method following the six-stage PRISMA 2020 protocol, including the formulation of research questions, development of a search strategy, application of inclusion and exclusion criteria, study selection, quality assessment, and thematic synthesis. Data were collected from Google Scholar and Garuda using the keywords …

Preferences For Mathematics And Science Education Majors Among Senior High School Students In Bataan, Zydrick L. Avelino

Jurnal Pendidikan Sains

This study examines the factors influencing Senior High School students’ preferences for Bachelor of Secondary Education (BSEd) majors in Bagac and Morong, Bataan, with particular focus on the low interest in Mathematics and Science specializations despite increasing demand for STEM educators. Using a descriptive quantitative design, data were collected from 369 students through a structured survey and analyzed using frequency and percentage distributions. The results reveal a strong preference for non-STEM majors, with Social Studies (42.12%) and English (35.04%) dominating, while Science (15.43%) and Mathematics (7.395%) received significantly lower interest. Personal interest emerged as the primary determinant (58.8%), followed by …

Multiscale Computational Modeling Of The Cardiopulmonary Consequences Of Postnatal Hyperoxia With Implications For Preterm-Born Children, Salla M. Kim, Filip Jezek, Pim J. A. Oomen, Gregory P. Barton, Feng Gu, Daniel A. Beard, Kara N. Goss, Mitchel J. Colebank, Naomi C. Chesler

Faculty Publications

Moderate to extreme preterm birth (<  32 weeks gestation) affects cardiopulmonary structure and function and is associated with increased risk of heart failure through adulthood. The rat hyperoxia (Hx) model (term born; postnatal Hx exposure) captures biventricular changes, including at the cell and organ scale, and pulmonary vascular remodeling seen in preterm humans. However, synthesizing these measures across scales and organ systems is challenging. We hypothesized that in silico modeling of biventricular mitochondrial, myofiber, and organ-scale function plus circulatory function could capture key features of cardiopulmonary abnormalities due to preterm birth. Therefore, we calibrated a multiscale model to subject-specific biventricular pressure–volume data previously obtained from Hx rats alongside normoxic (Nx) controls to investigate the abnormalities in cardiopulmonary function at multiple scales in this animal model of human preterm birth. The calibrated model demonstrates excellent agreement with the data and captures the expected pulmonary vascular changes and right ventricular dilation seen in preterm-born children. Our multiscale modeling approach captures cardiopulmonary abnormalities across spatial scales and provides an innovative approach to explore the consequences of preterm birth beyond preclinical experimental data alone. This is a foundational step in understanding the impact of preterm birth on cardiopulmonary disease in childhood as well as adulthood.

Optimal Error Estimates Of The Diffuse Domain Method For Second Order Parabolic Equations, Wenrui Hao, Lili Ju, Yuejin Xu

Faculty Publications

In this paper, we study the convergence behavior of the diffuse domain method (DDM) for solving a class of second-order parabolic partial differential equations with Neumann boundary condition posed on general irregular domains. The DDM employs a phase-field function to extend the original parabolic problem to a similar but slightly modified problem defined over a larger rectangular domain that contains the target physical domain. Based on the weighted Sobolev spaces, we rigorously establish the convergence of the diffuse domain solution to the original solution as the interface thickness parameter goes to zero, together with the corresponding optimal error estimates under …

The Blurred Boundaries Of Care: A Qualitative Analysis Of Nurse-Doula Role Conflict, Curisa Mae Tucker Phd, Rn, Maria Mcclam, Kelly Russin Dnp, Rnc-Ob, Chse, Nansi Boghossian, Rachel Gulczinski, Lauren Workman

Faculty Publications

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Methods:

Patterns Of Multimorbidity Among Low-Income Adults Who Smoke With Implications For Tailored Interventions: A Cluster Analysis Using A Mixture Of Bernoulli Model, Monique T. Cano, Michael R. Lindstrom, Oscar F. Rojas Perez, Ricardo F. Muñoz

School of Mathematical & Statistical Sciences Faculty Publications

Introduction: Smoking cigarettes remains a leading modifiable risk factor for preventable health conditions. In the United States, the health burden of smoking disproportionately impacts low-income individuals. Multimorbidity is common in this group, complicating treatment and worsening outcomes. Identifying multimorbidity clusters can support targeted, individualized interventions. This study aimed to identify multimorbidity clusters among individuals who smoke and experience economic hardship and provide clinical recommendations to enhance health outcomes.

Method: Individuals who smoke and experience economic hardship (N = 60) were recruited from the San Francisco Health Network (SFHN) and were assessed for physical and mental conditions. Cluster analysis was …