Digital Commons Network^™

The Eco-Epidemiology Of Pacific Coast Tick Fever In California, Kerry A. Padgett, Denise L. Bonilla, Marina E. Eremeeva, Carol A. Glaser, Robert S. Lane, Charsey Cole Porse, Martin B. Castro, Sharon L. Messenger, Alex Espinosa, Jill Hacker, Anne Kjemtrup, Bonnie Ryan, Jamesina J. Scott, Renjie Hu, Melissa Hardstone Yoshimizu, Gregory A. Dasch, Vicki Kramer

Environmental Health Sciences: Faculty Publications

Rickettsia philipii (type strain “Rickettsia 364D”), the etiologic agent of Pacific Coast tick fever (PCTF), is transmitted to people by the Pacific Coast tick, Dermacentor occidentalis. Following the first confirmed human case of PCTF in 2008, 13 additional human cases have been reported in California, more than half of which were pediatric cases. The most common features of PCTF are the presence of at least one necrotic lesion known as an eschar (100%), fever (85%), and headache (79%); four case-patients required hospitalization and four had multiple eschars. Findings presented here implicate the nymphal or larval stages of D …

Lessons From The Past: Unfolding The Dynamics Among Climate, Balkan Landscapes, And Humans Over The Past Millennium, Charuta J. Kulkarni

Dissertations, Theses, and Capstone Projects

The primary objective of this doctoral dissertation is to reconstruct the environmental history of the Central Balkans (Serbia) over the past millennium utilizing biological proxies (pollen, spores, and charcoal), geochemical signals through X-ray fluorescence (XRF), statistical analyses, and atomic mass spectrometry (AMS) ¹⁴C chronology. This dissertation establishes the first chronological framework for vegetation-landscape changes in Serbia and discusses the role of humans and climate as underlying processes.

Chapter 1 discusses the background and the nature of the research problem followed by the extensive literature review on the topic of the Holocene climate and paleoecology. The state of Holocene paleoecology …

The Economic Value Of Forest Park Ecosystem Services: Results Of Five Focus Groups Conducted In Spring 2016, Randall A. Bluffstone, Pablo Barreyro, Jenny Dempsey Stein, Cody Kent, Antonia Machado

Economics Faculty Publications and Presentations

Objective: This initial phase of research lays the foundation for a survey using contingent valuation (CV) and choice experiment (CE) methods. We asked select Portland residents what they care about most in Forest Park, their willingness to pay (WTP) for improving ecosystem services and how they generally think about the value of those goods and services. These results will help us narrow the experimental design of the forthcoming CV/CE study.

Approach: We conducted a focus group in each of Portland’s 5 “quadrants.” We chose each location - Skyline, St. John’s, Cully, Foster-Powell and Hillsdale - based on either its proximity …

Using Ecological Production Functions To Link Ecological Processes To Ecosystem Services, Randall Jf Bruins, Timothy J. Canfield, Clifford Duke, Larry Kapustka, Amanda M. Nahlik, Ralf B. Schäfer

United States Environmental Protection Agency: Publications

Ecological production functions (EPFs) link ecosystems, stressors, and management actions to ecosystem services (ES) production. Although EPFs are acknowledged as being essential to improve environmental management, their use in ecological risk assessment has received relatively little attention. Ecological production functions may be defined as usable expressions (i.e., models) of the processes by which ecosystems produce ES, often including external influences on those processes. We identify key attributes of EPFs and discuss both actual and idealized examples of their use to inform decision making. Whenever possible, EPFs should estimate final, rather than intermediate, ES. Although various types of EPFs have been …

Stream Microbial Communities As Potential Indicators Of River And Landscape Disturbance In North-Central Arkansas, Wilson Howard Johnson

Graduate Theses and Dissertations

In the past decade, 29 shale basins have been actively developed across 20 states for extraction of natural gas (NG) via horizontal drilling/hydraulic fracturing (=fracking). This includes ~5000 wells within the Fayetteville shale of north-central Arkansas. Development often impacts both river- and landscapes, and management requires catchment-level evaluations over time, with organismal presence/absence as indicators. For this study next-generation sequencing was used to identify/characterize microbial communities within biofilm of eight Arkansas River tributaries, so as to gauge potential catchment influences. Streams spanned a gradient of landscape features and hydrological flows, with four serving as ‘potentially impacted catchment zones’ (PICZ) and …

Applications Of Time-Lapse Imagery For Monitoring And Illustrating Ecological Dynamics In A Water-Stressed System, Emma Brinley Buckley

School of Natural Resources: Dissertations, Theses, and Student Research

Understanding and perceiving the natural world is a key part of management, policy, conservation, and inevitably for our future. Increased demand on natural resources has heightened the importance of documenting ecosystem changes, and knowledge-sharing to foster awareness. The advancement of digital technologies has improved the efficiency of passive monitoring, connectivity among systems, and expanded the potential for innovative and communicative approaches. From technological progression, time-lapse imagery has emerged a valuable tool to capture and depict natural systems. I sought to enhance our understanding of a water-stressed system by analyzing imagery, in addition to integrating images with data visualization to illustrate …

From Near And Far: Utilization Of In-Situ And Remotely Sensed Satellite Data From Nasa And Noaa, Jessica Rochelle Price Sutton

Theses and Dissertations

Satellite remote sensing observations have been used for numerous studies to better understand physical and biological properties over varying spatial and temporal scales. Depending on the satellite and sensor, the satellite-derived observations can provide high spatial and temporal resolution for many important physical and biological variables. While there are many limitations in utilizing satellite remote sensing products, there are also many advantages. This dissertation investigates three different applications for satellite remote sensing products to address climatological and ecological concerns. This dissertation is motivated by two overall research questions: (1) How can satellite remote sensing products be used to address important …

Ionic Liquid Extraction Unveils Previously Occluded Humic-Bound Iron In Peat Soil Pore Water, Timothy J. Veverica, Evan S. Kane, Amy Marcarelli, Sarah A. Green

Department of Biological Sciences Publications

Globally, peatland ecosystems store tremendous amounts of C relative to their extent on the landscape, largely owing to saturated soils which limit decomposition. While there is still considerable uncertainty regarding CO₂ production potential below the water table in peatland ecosystems, extracellular Fe reduction has been suggested as a dominant pathway for anaerobic metabolism. However, colorimetric methods commonly used to quantitate Fe and partition between redox species are known to be unreliable in the presence of complex humic substances, which are common in peatland pore water. We evaluated both the standard o-phenanthroline (o-P) Method and an ionic …

Development And Validation Of A Remote Sensing Model To Identify Anthropogenic Boreholes That Provide Dry Season, Refuge Habitat For Anopheles Vector Mosquitoes In Sub-Saharan Africa, James Pkemoi Kukat

USF Tampa Graduate Theses and Dissertations

A lack of surveillance systems is an impediment to public health intervention for perennial vector-borne disease transmission in northern tropical savanna region of Kenya. The population in this area are mostly poor nomadic pastoralists with little acquired functional immunity to Plasmodium falciparum, due to infrequent challenges with the parasite. A common characteristic in tropical savanna climatic zone is the availability of riverbeds that have anthropogenic boreholes that provide malaria vector mosquitoes, such as Anopheles gambiae s.l and Anopheles funestus, with aquatic refuge habitats for proliferation and endemic transmission to proximity human households during the dry-season. Unfortunately, currently there …

Connecting To Nature, Community, And Self: A Conservation Corps Approach To Re-Engaging At-Risk Youth In Science Education, Sara Jo Linden

Dissertations and Theses

The social and environmental challenges of the coming decades will require that individuals possess environmental literacy: the understanding of natural systems combined with a sense of care for the earth, and the confidence and competency to act on its behalf. At the same time, disengaged youth need education environments that foster belonging and promote affective outcomes. The youth conservation corps model provides a natural context for engaging academically at-risk youth in environmental science education, while fostering connection to nature and student self-efficacy in ways that are experiential, relevant, and relationship-based. The focus of this study was a conservation corps program …

Plants' Native Distributions Do Not Reflect Climatic Tolerance, Tierney Bocsi, Jenica M. Allen, Jesse Bellemare, John Kartesz, Misako Nishino, Bethany A. Bradley

Biological Sciences: Faculty Publications

Aim: Biogeographers have long known that plant species do not fully encompass their fundamental niche. Nonetheless, in practice, species distribution modelling assumes that plant distributions represent a reasonable approximation of their environmental tolerance. For ecological forecasting, projections of habitat loss due to climate change assume that many species will be unable to tolerate climate conditions outside of those found within their current distributional ranges. We aim to test how well occurrences in the native range approximate the climatic conditions in which plant species can survive.

Location: Continental USA. Methods: We compared the climatic conditions between occurrences in the US native …

Characterization Of The Marine Sponge Amphimedon Compressa Microbiome Across A Spatial Gradient, Renee Michelle Potens

HCNSO Student Theses and Dissertations

Diverse and ecologically important microbial communities (microbiomes) are symbiotic within marine sponges. In this study, the microbiome of Amphimedon compressa from three sample locations (Broward and Dade Counties, Southeast Florida, USA and the Southern Caribbean, Bocas del Toro, Panama) is characterized using 16S rRNA Illumina sequencing. The predominant taxa are Proteobacteria and Cyanobacteria, as expected for Low Microbial Abundance sponges, accounting for over 53% of the total microbiome community. The numbers of Operational Taxonomic Units (OTUs) decrease from Broward County (2,900) to Dade County (2,300) and then Bocas del Toro (1,200). The correlates to a decreasing north-south gradient of …

Spatial Distribution And Geomorphic Factors Of Lead Contamination On Floodplains Affected By Historical Mining, Big Rover, S.E. Missouri, David Bower Huggins

Graduate Theses/Dissertations

Historical mining in the Old Lead Belt resulted in lead (Pb) contamination of floodplain soils for over 170 km along the Big River in southeastern Missouri. The overall pattern of contamination are understood. However, Pb distribution across floodplain surfaces has not been investigated at the scale needed for site-level remediation planning. The goal of this project is to examine spatial distribution of Pb with more detail and identify the role of geomorphic processes. Predictive models are needed to evaluate factors affecting Pb distribution such as elevation, distance from the channel, and geochemistry. This study evaluates Pb distribution at three ~1km …

Assessment Of American White Pelican Predation And Reproductive Success Of Walleye In The Tamarac River, Mn, Jake Graham

Biology Graduate Theses

The Tamarac River is a major tributary of the Red Lakes MN, which provides an economically important multispecies fishery. The river experiences spring spawning migrations of northern pike, walleye, and white suckers. However, limited data exists related to reproductive success of fishes in the river. Furthermore, in the previous decade large congregations of American white pelicans (AWPE) have been observed using the Tamarac River as a foraging ground each spring. Assessing reproductive success of fishes in the Tamarac River provides a more holistic understanding of fish ecology in the river and the importance of the Tamarac River to the Red …

Determining Methods Of Propagation For The Investigation Of Intraspecific Variability Of Climate Change Responses Of Appalachian Plant Species, Gayle L. Tyree

Honors Theses

Species range migrations are a well-documented response to climate change (Loarie et al. 2009), with range shifts mainly occurring poleward or to higher elevations (Walther et al. 2002). As range shifts occur, variation in phenotypic traits within plant species across climate gradients could affect their abilities to acclimate or adapt to a changing climate (Hooper et al. 2005, Souza et al. 2011). In 2014 Dr. Jennifer Boyd (BGES) initiated a research project to examine potential intraspecific phenotypic variation within wide-ranging Appalachian plant species of responses to projected future atmospheric CO2 and temperature regimes. As an undergraduate research assistant, I focused …

The Social Side Of Software Platform Ecosystems, Cleidson R. B. Da Souza, Fernando Figueira Filho, Müller Miranda, Renato Pina Ferreira, Christoph Treude, Leif Singer

Research Collection School Of Computing and Information Systems

Software ecosystems as a paradigm for large-scale software development encompass a complex mix of technical, business, and social aspects. While significant research has been conducted to understand both the technical and business aspects, the social aspects of software ecosystems are less well understood. To close this gap, this paper presents the results of an empirical study aimed at understanding the influence of social aspects on developers’ participation in software ecosystems. We conducted 25 interviews with mobile software developers and an online survey with 83 respondents from the mobile software development community. Our results point out a complex social system based …

Gaur (Bos Gaurus) Abundance, Distribution, And Habitat Use Patterns In Kuiburi National Park, Southwestern Thailand, Supatcharee Tanasarnpaiboon

School of Natural Resources: Dissertations, Theses, and Student Research

Population status of gaur (Bos gaurus), a wild cattle, in most habitats where they are present, is still unknown. As the use of camera traps in wildlife studies are widespread, I developed photographic individual identification procedures and utilized encounter histories of gaur individuals from camera trap data to estimate gaur abundance and density using the spatially explicit capture-recapture analysis. The study was conducted at Kuiburi National Park, southwestern Thailand, comprised of dry evergreen forest, moist evergreen forest, and man-modified secondary forest during November 2013- January 2015. I conducted 71 direct observations in a savannah-like habitat area to observe …

The Role Of Hydrologic Regimes In Driving Morphologic Divergence And The Trait Compositions Of Fish Assemblages, Lindsey A. Bruckerhoff

Graduate Theses and Dissertations

The hydrologic regime is an important determinant of the ecological integrity of a stream. Hydrologic regimes are defined by the magnitude, timing, frequency, rate of change, and duration of high and low flow events and capture long term patterns of variability and predictability of water movement in a stream. Flow regimes influence many aspects of the biophysical environment in lotic systems; therefore organisms have adapted to natural flow patterns. We investigated how fish have adapted to flow regimes at both a population and community level. In the first study presented in this thesis, we hypothesized fish exhibit phenotypic divergence to …

Eastern Wild Turkey Nest Site Selection In Two Frequently Burned Pine Savannas, Andrew R. Little, Nathan P. Nibbelink, Michael J. Chamberlain, L. Mike Conner, Robert J. Warren

School of Natural Resources: Faculty Publications

Introduction: Reproductive success is a critical factor affecting avian demographics and can be influenced by many factors including nesting chronology, predation risk, and fine-scale nest site selection.

Methods: We modeled the relative influences of habitat-related covariates at six spatial scales (nest site: 15-, 40-, 80-, 120-, 160-, and 200-m radii) on Eastern wild turkey (Meleagris gallopavo silvestris) nest site selection in two pine savannas managed by frequent prescribed fire (≤3 years) in southwestern Georgia during 2011–2013.

Results: Nest site (15-m scale) habitat metrics (mean visual obstruction [cm] and canopy closure [%]) had the greatest influence on nest site …

Export Of Insect Ecosystem Services From Hayed Native Prairie, Wayne J. Ohnesorg

Department of Entomology: Dissertations, Theses, and Student Research

Natural areas, such as prairie, have the potential to provide the benefits of pest suppression and pollination for agricultural production. In Nebraska, prairie is often used for hay production. The impact of prairie hay production management practices on beneficial arthropods is not well understood. Four prairie hay meadows adjacent to row crop fields were selected in northeast Nebraska. The goal was to assess the impact of haying them on beneficial arthropods and the movement of natural enemies into adjacent crop fields. Three management practices were evaluated for hay harvested from prairie meadows one cut per growing season, two cuts per …

The Ecologist's Field Guide To Sequence-Based Identification Of Biodiversity, Simon Creer, Kristy Deiner, Serita D. Frey, Dorota Porazinska, Pierre Taberlet, W. Kelley Thomas, Caitlin Potter, Holly M. Bik

Faculty Publications

The past 100 years of ecological research has seen substantial progress in understanding the natural world and likely effects of change, whether natural or anthropogenic. Traditional ecological approaches underpin such advances, but would additionally benefit from recent developments in the sequence-based quantification of biodiversity from the fields of molecular ecology and genomics. By building on a long and rich history of molecular taxonomy and taking advantage of the new generation of DNA sequencing technologies, we are gaining previously impossible insights into alpha and beta diversity from all domains of life, irrespective of body size. While a number of complementary reviews …

Evolutionary Responses Of Invasive Grass Species To Variation In Precipitation And Soil Nitrogen, Monica A. Nguyen, Amy E. Ortega, Quoc L. Nguyen, Sarah Kimball, Michael L. Goulden, Jennifer L. Funk

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

1.Global climate models suggest that many ecosystems will experience reduced precipitation over the next century and the consequences for invasive plant performance are largely unknown. Annual invasive species may be able to quickly evolve traits associated with drought escape or tolerance through rapid genetic changes.

2.We investigated the influence of five years of water and nitrogen manipulations on trait values in a southern California grassland system. Seeds from two annual grass species (Avena barbata, Bromus madritensis) were collected from experimental plots and grown in a common environment over two generations. We measured 14 physiological, morphological, phenological, and …

Prefrontal White Matter Pathology In Air Pollution Exposed Mexico City Young Urbanites And Their Potential Impact On Neurovascular Unit Dysfunction And The Development Of Alzheimer’S Disease, Partha S. Mukherjee

Mathematics Faculty Publications and Presentations

Millions of urban children are chronically exposed to high concentrations of air pollutants, i.e., fine particulate matter (PM_2.5) and ozone, associated with increased risk for Alzheimer’s disease. Compared with children living with clear air those in Mexico City (MC) exhibit systemic, brain and intrathecal inflammation, low CSF Aβ ₄₂, breakdown of the BBB, attention and short-term memory deficits, prefrontal white matter hyperintensities, damage to epithelial and endothelial barriers, tight junction and neural autoantibodies, and Alzheimer and Parkinson's hallmarks. The prefrontal white matter is a target of air pollution. We examined by light and electron microscopy the prefrontal …

Wildlife Underpasses: Frequency Of Use By Neotropic Mammals In Parque Natural Metropolitano, Panamá City, Panamá, Kelly Russo

Independent Study Project (ISP) Collection

In a world of ever increasing globalization and urbanization, roads present wildlife with a number of challenges. They fragment habitats, disrupt animal movements, impact reproductive success and the fitness of individuals and populations, alter population dynamics, and cause unnatural levels of mortality. Fortunately, the numerous detrimental effects of roads can be alleviated by the proper implementation of mitigation structures, such as underpasses, sky bridges and vegetated overpasses. These mitigation structures are an important source of genetic connectivity, especially in a peri-urban reserve setting. This study seeks to understand what species of mammal utilize the wildlife underpasses below Via La Amistad, …

Drone Technology For Low-Cost Precision Mapping On Campus And In The Community, Suresh Muthukrishnan, Mike Winiski

Earth and Environmental Sciences Presentations

Proliferation of consumer grade small Unmanned Aerial Vehicles (sUAV) or drones brings many opportunities in the area of mapping and spatial analysis. Although misuse of drone technology is well-chronicled in the media, the important and positive role played by drones at the community level is often overlooked. At Furman University, we have integrated the use of drones into teaching, research, and various sustainability and safety initiatives on campus and with community partners. Using a combination of tools, including drones and GIS, we mapped the sprinkler irrigation network and streetlight locations on campus and in a local community. The general workflow …

Influence Of The Mississippi River On Pseudo-Nitzschia Spp. Abundance And Toxicity In Louisiana Coastal Waters, Sibel Bargu, Melissa M. Baustian, Nancy N. Rabalais, Ross Del Rio, Benjamin Von Korff, R. Eugene Turner

Faculty Publications

The presence of domoic acid (DA) toxin from multiple species of Pseudo-nitzschia is a concern in the highly productive food webs of the northern 1,* 2,3 2 1 1,4 1 1 2 3 4 Gulf of Mexico. We documented the Pseudo-­nitzschia presence, abundance, blooms, and toxicity over 3 years along a transect ∼100 km west of the Mississippi River Delta on the continental shelf. Pseudo-nitzschia were present throughout the year and occurred in high abundances (>10 cells l ) in the early spring months during high Mississippi River (MSR) flow (∼20,000 m s ) but were most abundant ( …

Pharmaceutical Contaminants As Stressors On Rocky Intertidal And Estuarine Organisms: A Case Study Of Fluoxetine, Joseph Richard Peters

Dissertations and Theses

Contaminants such as pharmaceuticals are of increasing concern due to their ubiquitous use and persistence in surface waters worldwide. Limited attention has been paid to the effects of pharmaceuticals on marine life, despite widespread detection of these contaminants in the marine environment. Of the existing studies, the majority assess the negative effects of pharmaceuticals over an exposure period of 30 days or less and focus on cellular and subcellular biomarkers. Longer studies are required to determine if chronic contaminant exposure poses risks to marine life at environmentally relevant concentrations. Also scarce in the literature is examination of whole organism effects …

Chemical Investigation Of Antarctic Marine Organisms & Their Role In Modern Drug Discovery, Jacqueline Lee Fries

USF Tampa Graduate Theses and Dissertations

The chemicals produced by biological systems, whether proteins, peptides, or terpenes, will always provide an intriguing topic for researchers. Invisibly controlling every aspect of nature, these molecules are responsible for life, evolution, and death. Specifically, here is described the secondary metabolites produced by Antarctic marine organisms as well as others, and how they are used to defend or attract other animals while potentially providing health benefits to mankind. This is done through collection, extraction, and separation of individual specimens. The respective mixtures of compounds after isolation are then analyzed via spectroscopic methods such as nuclear magnetic resonance spectroscopy, mass spectrometry, …

Hydrothermal Monitoring In Yellowstone National Park Using Airborne Thermal Infrared Remote Sensing, C. M. U. Neale, C. Jaworowski, H. Heasler, S. Sivarajan, A. Masih

Daugherty Water for Food Global Institute: Faculty Publications

This paper describes the image acquisition and processing methodology, including surface emissivity and atmospheric corrections, for generating surface temperatures of two active hydrothermal systems in Yellowstone National Park. Airborne thermal infrared (8–12 μm) images were obtained annually from 2007 to 2012 using a FLIR SC640 thermal infrared camera system. Thermal infrared image acquisitions occurred under clear-sky conditions after sunset to meet the objective of providing high-spatial resolution, georectified imagery for hydrothermal monitoring. Comparisons of corrected radiative temperature maps with measured ground and water kinetic temperatures at flight times provided an assessment of temperature accuracy. A repeatable, time-sequence of images for …

Journal Of The Arkansas Academy Of Science - Volume 70 2016, Academy Editors

Journal of the Arkansas Academy of Science

No abstract provided.