Digital Commons Network^™

Investigation Of Fine-Grain Cu And Cu Alloys For Low-Temperature Hybrid Bonding Applications, Sarabjot Singh

Electronic Theses & Dissertations (2024 - present)

Hybrid bonding has emerged as a key enabler for next-generation three-dimensional (3D) integration, offering fine-pitch interconnects and improved electrical performance. However, conventional Cu–Cu hybrid bonding typically requires elevated temperatures to achieve sufficient diffusion and interface quality, posing challenges for temperature-sensitive device integration and process compatibility. This work investigates materials engineering approaches to enable low-temperature Cu–Cu bonding through both microstructure design and alloying strategies.

This work begins by examining grain refinement in Cu as a pathway to enhance diffusion through increased grain boundary density, providing efficient atomic transport without introducing additional elements. Three Cu-based systems Cu–Co, Cu–Ag, and Cu–Al were systematically …

Hidden Markov Models For Stock Market Regime Prediction, Meghan Blanch

Electronic Theses & Dissertations (2024 - present)

Hidden Markov Models (HMMs) are a powerful mathematical system used for analyzing time sequences in which the underlying states are unable to be directly observed. This project strives to develop the theory and computation of such models, including deriving the forward and backward variables, the Baum-Welch algorithm, and the Viterbi algorithm. Each of these HMM components are derived and explained to demonstrate the probabilistic principles that allow HMMs to be effective for modeling sequential data.

To demonstrate its practical relevance, the HMM is applied to financial time series. The observable stock market returns tend to be influenced by market regimes …

Scalable Single-Erbium Telecom Qudits With Record Room-Temperature Quantum Coherence In Silicon-Based Nanostructures, Alexander Kaloyeros

Electronic Theses & Dissertations (2024 - present)

Advancing quantum information science demands solid-state quantum systems that maintain long quantum coherence at elevated temperatures while supporting scalable, CMOS-compatible fabrication and telecom C-band operation. No existing platform has simultaneously achieved these requirements, as state-of-the-art demonstrations of coherent control of erbium ions, with an intrinsic telecom-band optical transition, have been confined to cryogenic temperatures below < 10 K under controlled vacuum conditions. This thesis introduces a new paradigm in which materials science and engineering provides the enabling pathway to quantum coherence.

A foundry-compatible nanofabrication approach, paired with targeted materials engineering, is developed to realize a new class of CMOS-scalable quantum system: arrays of spatially isolated single-erbium-ion qudits (five-level systems) embedded in silicon-based (e.g., silicon carbide (SiC) and SiC_xO_y) hollow nanopillars (HNPs). Non-lithographically …

Entropic Dynamics Approach To The Classical Limit Of Quantum Mechanics: Decoupling Of The Center Of Mass Motion For A Mesoscopic Particle, Fatimah Judayba

Electronic Theses & Dissertations (2024 - present)

In the Entropic Dynamics (ED) approach, quantum mechanics is derived from the principles of entropic inference and information geometry. The ED approach differs from other interpretations by making a clear commitment to distinguishing which variables are ontic (real) and which are epistemic. The classical limit for the center of mass (CM) coordinate is achieved for a large number of particles, M →∞, while Planck’s constant ℏ remains finite. Typically, the emergence of the classical limit requires decoherence through interactions with the external environment. In this work, we investigate whether the classical behavior of the CM coordinate in a mesoscopic system …

Corannulene: Optimized Synthesis And Four-Fold Reduction, Guy Rozenman

Electronic Theses & Dissertations (2024 - present)

Corannulene is a bowl-shaped π-conjugated fragment of the ball-shaped C₆₀-fullerene that undergoes stepwise multielectron reduction and can accept four electrons to form the aromatic tetraanion, C₂₀H₁₀⁴⁻. Prior literature has established this charge state in donor-solvated alkali-metal assemblies: early solution studies identified the formation of the tetraanion under lithium reduction in THF, and later X-ray diffraction crystallography demonstrated a triple-decker lithium sandwich in which two corannulene tetraanion decks encapsulate five Li⁺ ions. The central objective of this thesis is to determine whether the corannulene tetraanion can instead be isolated as a bulk solvent-free alkali-metal salt containing only corannulene and …

Informationally-Optimal Measurements On Single-Qubit Systems, Adam V. Preston

Electronic Theses & Dissertations (2024 - present)

This thesis will focus on deriving informationally-optimal quantum state tomographic measurements on single-qubit systems, with the definition of informationally optimal to be defined as those measurements which maximize the average information gain. The informationally-optimal measurements that will be covered include projective measurements (formally building off of the work of [1] and putting it on firm, information-theoretic foundations), and more general types of quantum measurements called directional (also known as rank-one) positive operator-valued measure (POVM) measurements, and, finally, adaptive directional POVM measurements.

For projective measurements, we build on the work of Wootters and Fields ([1]) and show, via analytical methods and …

An Evaluation Of Current And Future Extreme Precipitation Events In The South American Altiplano Using Convective-Permitting Model Simulations, Karen R. Conron Chamberlain

Electronic Theses & Dissertations (2024 - present)

Extreme precipitation events in the South American Altiplano present significant hazards to communities in the Andean region, yet their future characteristics under anthropogenic climate change remain uncertain because of complex terrain and limitations of course-resolution climate models. This study evaluates the ability of South America Affinity Group Weather Research and Forecasting (SAAG-WRF) model with 4-km grid-spacing to reproduce 2000-2015 temperature, precipitation, and extreme precipitation events over the Altiplano. Examination of projected future changes is completed using the SAAG-WRF pseudo global warming (WRF PGW) simulation representing an approximately 3°C warmer global climate. The historical/control simulation (WRF CTL) was evaluated against DECADE …

Weather-Related Road Condition Detection Using Co-Developed Machine Learning Methods, Carly Sutter

Electronic Theses & Dissertations (2024 - present)

Transportation agencies make critical operational decisions during hazardous weather events, including assessment of road conditions and resource allocation. In this study, machine learning models are developed to provide additional support for the New York State Department of Transportation (NYSDOT) by automatically classifying road conditions across the state. Convolutional neural networks and random forests are trained on NYSDOT roadside camera images and weather data to predict road surface conditions. This task draws critically on a labeled dataset of 22,000 camera images containing six road surface conditions (severe snow, snow, wet, dry, poor visibility, and obstructed) generated from an iterative hand-labeling process …

Multivariate Quantile Autoregression-Mixed Data Sampling (Mvqar-Midas) Modeling Of Cost Of Living And Supply Chain Dynamics In Canada., Patrick Gbolonyo

Theses and Dissertations (Comprehensive)

In recent years, the rising cost of living as a result of persistent inflationary pressures, disruptions in the global supply chains, and changes in the macroeconomic landscape has become a critical topic of discussion. To address this, we move beyond a mean-based framework and employ a quantile regression approach. This allows the persistence of each series and the transmis- sion of shocks between the Consumer Price Index (CPI) (the total CPI which is a percentage change over the past 12 months), the Interest Rate (IR)(the target for the overnight rate), the New Housing Price Index (NHPI), and high-frequency supply chain …

Error-Driven Density Control For Compact Gaussian Splatting Under Sparse Supervision, Abdelrhman Elrawy

Theses and Dissertations (Comprehensive)

This thesis studies efficiency and stability challenges in Gaussian-splatting-based reconstruction under sparse supervision. In few-shot novel view synthesis, standard 3D Gaussian Splatting (3DGS) can overfit the limited training views and grow an unnecessarily large number of primitives due to limitations in its Adaptive Density Control (ADC) mechanism. This thesis introduces an error-driven reformulation of ADC that triggers densification using opacity gradients as a lightweight proxy for rendering error, and shows that such aggressive densification must be paired with delayed and conservative pruning to prevent destructive create--destroy cycles. When combined with depth-based geometric regularization, the resulting framework produces substantially more compact …

Investigation Of Mercury Bioaccessibility In Subsistence Fishes From The Canadian Subarctic, Kiran Mateo Sharma Mr

Theses and Dissertations (Comprehensive)

Fish consumption is the primary pathway for human exposure to methylmercury (MeHg), a global contaminant of concern known to cause adverse health effects. Fort Albany First Nation, a remote Indigenous community in northern Ontario that relies on fish for both subsistence and cultural practices, has expressed concern regarding the safety of local fish consumption. Community members and leaders have communicated several priorities for scientific research that are the foundation of this thesis. Specifically, consumers of wild-caught fish have asked how traditional cooking methods may affect mercury concentrations in fish, and how mercury concentrations in little-studied organs, such as liver and …

Flexible Membrane Electrodes For Use In High-Capacity Lithium-Ion Batteries, David A. Denemark

College of Graduate Studies: Theses & Dissertations

Wearable electronic devices require high-capacity flexible batteries to improve user comfort and increase usage time per charge. In this thesis, flexible lithium-ion battery (LIB) electrodes are prepared using a novel and scalable phase inversion method, embedding one-dimensional SnO₂ nanowires and double-walled carbon nanotubes within a porous polyacrylonitrile asymmetric membrane. The optimized electrode delivered an initial specific discharge capacity of 915.93 mAh g⁻¹, approximately 2.5 times greater than conventional graphite anodes, with 61.99% capacity retention after 45 cycles. The incorporation of a carbon mesh substrate further enhanced both electrochemical and mechanical performance, achieving 89.46% capacity retention after 45 cycles and a …

Untrained Position-Encoded Multilayer Perceptron Network For Structured Illumination Microscopy Reconstruction, Sahil Sharma, Leonidas Zimianitis, Krishnendu Samanta, Balpreet Singh Ahluwalia, Joby Joseph, Dushan N. Wadduwage

Computer Science Faculty Publications

Structured Illumination Microscopy (SIM) enables super-resolution imaging by encoding high-frequency spatial information through patterned light. While traditional Fourier-based reconstruction methods are prone to artifacts under suboptimal conditions, recent deep learning approaches often require large training datasets and lack adaptability across different imaging setups. In this work, we present Position Encoded Multi-Layer Perceptron (PEM) network that leverages implicit neural representations (INRs) and SIM forward-model-driven modeling to reconstruct super-resolved images without any training data. PEM-SIM represents each spatial coordinate as a combination of sinusoidal functions across multiple frequencies, enabling rich encoding of fine spatial detail. A forward model grounded in SIM image …

Sage: Spatially Aware Gene Selection And Dual-View Embedding Fusion For Domain Identification In Spatial Transcriptomics, Yi He, Yunpei Xu, Liqing Ding, Hong-Dong Li, Yaohang Li, Shaokai Wang

Computer Science Faculty Publications

Despite enabling high-resolution mapping of gene expression within tissues, spatial transcriptomics (ST) still faces challenges in accurately segmenting spatial domains due to complex tissue architecture and limitations of current methods. Most approaches rely on local spatial priors, lack gene-level interpretability, and fall short in capturing structure-discriminative genes or long-range functional relationships, limiting their ability to resolve biologically meaningful architectures. We present Spatially Aware Gene selection and dual-view Embedding fusion (SAGE), a unified and reproducible framework for domain identification in spatial transcriptomics that combines topic-driven gene selection with dual-view embedding fusion to address these gaps. SAGE integrates non-negative matrix factorization (NMF)-based …

Quantum Machine Learning Models: Principles, Frameworks, And Computational Challenges, K. A. Jayabalaji, S. Venkata Anand, Dineshkumar Rajendran, Prasanta Chatterjee Biswas, Sardor Omonov, Rubaid Ashfaq

Computer Science Faculty Publications

Quantum machine learning (QML) has become an optimistic avenue of harnessing quantum computation in data-driven modeling, especially of issues with high dimensionality and complicated correlations. Current methods are generally based on fixed or over-parameterized quantum circuits, and hence restricted to scalability as well as unproductive optimization in real-world hardware. This chapter introduces a hybrid quantum-classical learning system that is adaptive and provides principled quantum data encoding, architecture-conscious variational circuit design and resource-optimal optimization. The technique is based on the concepts of quantum architecture search and subspace-preserving transformations to trade expressiveness with trainability, and discretize the quantum model into a classical …

Design And Analysis Of Modern Quantum Neural Network Architectures For Intelligent Systems, Lakshmi Chandrakanth Kasireddy, Prabhakara Rao Kapula, Dineshkumar Rajendran, Neha Bharani, Srikanth Pulipeti, Islombek Khushvaktov

Computer Science Faculty Publications

Quantum neural networks (QNNs) offer a principled pathway for integrating quantum computation with machine learning through superposition- and entanglement-based representations. This chapter proposes an architecture-aware design and evaluation framework for modern QNNs, emphasizing robustness and system feasibility alongside predictive performance. Multiple architectures variational QNNs, quantum convolutional neural networks, tensor-network hybrids, and fully quantum models—are assessed under a unified protocol. Experimental analysis shows that the proposed architecture-search–guided QNN achieves 91.8% classification accuracy and an F1-score of 0.914, outperforming fixed-template variational QNNs by approximately 5.6 percentage points. Under depolarizing noise with probability p = 0.10, the proposed model retains 85.3% accuracy, whereas …

Integration Of Hybrid Quantum-Neuromorphic Ai With Cloud, Edge, And High-Performance Computing Environments, Arun B. Prasad, Ajay Prasad, Dineshkumar Rajendran, Anurag Tiwari, T. Akilan, Islombek Khushvaktov

Computer Science Faculty Publications

The convergence of quantum computing, neuromorphic learning, and distributed cloud infrastructures has occurred very rapidly, and intelligent systems are now providing new opportunities, but the challenge of instability, complexity of orchestration, and noise sensitivity remains in the way of practical integration. The proposed work is based on a hybrid quantum and neuromorphic architecture, which is the integration of event-based neuromorphic adaptation and quantum-assisted global optimization, orchestrated by cloud-HPC. The architecture presents the thermodynamically regularized learning and resourceful task scheduling to the probabilistic search and the continuous local adaptation. Experimental evaluation across financial modeling, medical imaging, and physical system prediction shows …

Contextual Scaffolding And Self-Efficacy: Supporting Computer Skill Development Among Blind Learners In India, Akshay Kolgar Nayak, Yash Prakash, Sampath Jayarathna, Hae-Na Lee, Vikas Ashok

Computer Science Faculty Publications

Inclusive computer literacy education efforts, broadening the participation of blind or visually impaired (BVI) individuals, have gained traction in recent years. Existing literature investigating these efforts primarily draws evidence from affluent Global North contexts, where accessibility resources and legal frameworks are relatively more mature. Little is known about the in-situ teaching and learning challenges faced by trainers and BVI students, respectively, in resource-constrained, multicultural Global South countries like India. To address this knowledge gap, we conducted a four-month contextual inquiry at two computer training centers catering to 94 BVI students in India. We notably observed a rigid, experience-driven training environment …

Modeling Joint Visual Attention In Naturalistic Dyadic Interactions, Kuushini Thennakoon, Yasasi Abeysinghe, Bhanuka Mahanama, Vikas Ashok, Sampath Jayarathna

Computer Science Faculty Publications

Joint visual attention (JVA) provides important insight into how individuals coordinate attention during social interaction. Egocentric eye tracking enables the study of JVA in natural, multi-user settings. This work presents a multi-stage framework to identify and analyze JVA using egocentric video and gaze data. The approach consists of three steps: spatiotemporal tube-based visual similarity, gaze-guided object detection, and attention pattern analysis using the ambient–focal coefficient K. Results show that object-focused collaborative activities exhibit high JVA, with object detection capturing higher joint attention than visual similarity, whereas conversation-based or independent activities show lower and more fragmented joint attention. Analysis of K …

Variational Autoencoder Inverse Mapper For Extraction Of Compton Form Factors: Benchmarks And Conditional Learning, Douglas Adams, Md Fayaz Bin Hossen, Joshua Bautista, Gia-Wei Chern, Simonetta Liuti, Marie Boër, Marija Čuić, Michael Engelhardt, Gary R. Goldstein, Huey-Wen Lin, Yaohang Li

Computer Science Faculty Publications

Deeply virtual exclusive scattering processes (DVES) serve as precise probes of nucleon quark and gluon distributions in coordinate space. These distributions are derived from generalized parton distributions (GPDs) via Fourier transform relative to proton momentum transfer. QCD factorization theorems enable DVES to be parameterized by Compton form factors (CFFs), which are convolutions of GPDs with perturbatively calculable kernels. Accurate extraction of CFFs from DVCS, benefiting from interference with the Bethe–Heitler (BH) process and a simpler final state structure, is essential for inferring GPDs. This paper focuses on extracting CFFs from DVCS data using a variational autoencoder inverse mapper (VAIM) and …

Lost In Instructions: Study Of Blind Users' Experiences With Diy Manuals And Ai-Rewritten Instructions For Assembly, Operation, And Troubleshooting Of Tangible Products, Monalika Padma Reddy, Aruna Balasubramanian, Jiawei Zhou, Xiaojun Bi, Iv Ramakrishnan, Vikas Ashok

Computer Science Faculty Publications

AI tools like ChatGPT and Be-My-AI are increasingly being used by blind individuals. Although prior work has explored their use in some Do-It-Yourself (DIY) tasks by blind individuals, little is known about how they use these tools and the available product-manual resources to assemble, operate, and troubleshoot physical/tangible products – tasks requiring spatial reasoning, structural understanding, and precise execution. We address this knowledge gap via an interview study and a usability study with blind participants, investigating how they leverage AI tools and product manuals for DIY tasks with physical products. Findings show that manuals are essential resources, but product-manual instructions …

Explainable Convolutional Neural Network Model Provides An Alternative Genome-Wide Association Perspective On Mutations In Sars-Cov-2, Parisa C. Hatami, Richard Annan, Luis Miranda, Jane L. Gorman, Mengjun Xie, Letu Qingge, Hong Qin

Computer Science Faculty Publications

Identifying informative genomic features in SARS-CoV-2 can help clarify patterns of viral evolution. In this study, we developed an explainable convolutional neural network (CNN) model to classify SARS-CoV-2 genomic sequences into the WHO-designated Variants of Concern (VOCs), Alpha, Beta, Gamma, Delta, and Omicron. Using a balanced dataset of genomes, the classification CNN achieved 99.96% accuracy on the held-out test set. To interpret the model’s predictions, we applied SHapley Additive exPlanations (SHAP) to estimate the contribution of each nucleotide position to VOC-label prediction and compared aggregated attributions with a chi-square GWAS baseline applied to the same categorical labels. SHAP prioritized several …

An Investigation Of Federated Gnns Under Aggregation, Data Poisoning, And Differential Privacy For Icu Length-Of-Stay Prediction, Shakib Mahmud Dipto, Soumya Banerjee, Sandip Roy, Ahmad F. Al Musawi, Preetam Ghosh, Sachin Shetty, Pratip Rana

Computer Science Faculty Publications

Accurate prediction of ICU Length of Stay (LoS) is essential for clinical decision-making and healthcare resource management. Graph Neural Networks (GNNs), such as GraphSAGE, offer a natural fit by capturing patient data from Electronic Health Records (EHRs) through graph structures. However, the distributed and sensitive nature of this data raises both privacy and legal concerns regarding the aggregation and training of GNN models. This additionally leads to issues with data imbalance and model robustness. In this study, we perform an analysis of the Federated Graph Neural Network (GNN-FL) framework to enable decentralized learning on EHRs derived from the MIMIC-III dataset. …

A Survey On Generative Ai For Detector Effects Unfolding In Particle And Nuclear Physics, Tareq Alghamdi, Tommaso Vittorini, Jitao Xu, Marco Battaglieri, Derek I. Glazier, Glòria Montaña, Giorgio Foti, Alessandro Pilloni, Nobuo Sato, Yaohang Li

Computer Science Faculty Publications

In particle and nuclear physics, “detector effects unfolding” can be viewed as a highdimensional inverse problem whose goal is to recover the true event distributions from observed experimental data corrupted by detector-induced distortions. Recent advances in generative AI have positioned data-driven and machine learning-based approaches as powerful alternatives to traditional unfolding techniques, offering superior scalability to high-dimensional data, capability of learning complex detector responses, and the ability to operate directly at the event level. We survey state-of the-art generative AI-based models for detector folding and unfolding. We review existing architectures and training strategies, and highlight recent methodological advances and open …

Replicatorbench: Benchmarking Llm Agents For Replicability In Social And Behavioral Sciences, Bang Nguyen, Dominik Soós, Qian Ma, Rochana R. Obadage, Zack Ranjan, Sai Koneru, Timothy M. Errington, Shakhlo Nematova, Sarah Rajtmajer, Jian Wu, Meng Jiang

Computer Science Faculty Publications

The literature has witnessed an emerging interest in developing and evaluating AI agents for automated assessment of research claims in scientific papers. Existing benchmarks focus primarily on the computational aspect of this task, testing agents' ability to reproduce or replicate research outcomes when having access to the code and data. This setting, while foundational, (1) fails to capture the inconsistent availability of new data for replication as opposed to reproduction, and (2) lacks ground-truth diversity by focusing exclusively on fully reproducible or replicable papers, thereby failing to evaluate an agent's ability to identify non-replicable research. Furthermore, most benchmarks only evaluate …

Student Conceptions Of Summation And Limits In The Definite Integral Following Quantitatively Focused Instruction, Caleb Daniel Holloway

2026 Scholarly Teaching Conference: Concurrent Session Papers

Recent studies have examined how students form productive conceptions of the definite integral and discussed techniques for promoting such conceptions. In this paper I present findings from interviews held with six students enrolled in second-semester calculus, four of whom had received quantitatively focused instruction on the definite integral. All six were chosen for their observed use of summation conceptions on definite integral problems, and here their conceptions are explored further. Additionally, we gain insight on their thinking regarding limits as related to the definite integral. The findings presented here add to our understanding of student thinking regarding the integral and …

Test Retakes In Introductory Math Courses, John Hird, Chris Mcclain

2026 Scholarly Teaching Conference: Poster Session Papers

In this poster, we describe the implementation of an exam retake model using specifications grading for math courses taken by non-STEM majors. This system was implemented by two faculty members over three years in two sequential courses. During that time, we tried several versions of allowed retakes, with varying restrictions on partial credit. Some of the challenges that we faced were scaling the system for use by different faculty members and with different courses, managing faculty workload on writing and grading multiple exams, and managing student expectations.

A Knowledge-Driven, Ai-Assisted Cyber Defence Framework For Iomt Remote Patient Monitoring, Kulsoom S. Bughio, David M. Cook, Abdul M. Unar

Research outputs 2022 to 2026

The rapid adoption of Internet Medical Things (IoMT) technologies in remote patient monitoring has reshaped healthcare delivery by enabling continuous, real-time clinical observation outside traditional care settings. However, this shift has also expanded the cyber-attack surface across heterogeneous, resource-constrained medical devices, wireless networks, cloud services, and third-party platforms. In cyber warfare, healthcare has become an incorporated target of geopolitics, with hospitals, remote monitoring systems, and emergency health systems being used to broaden the attack surface for adversaries to exploit. Existing security approaches for IoMT environments remain largely manual, fragmented, and reactive, limiting their effectiveness in dynamically assessing vulnerabilities and supporting …

Rrto: A High-Performance Transparent Offloading System For Model Inference In Mobile Edge Computing, Zekai Sun, Xiuxian Guan, Zheng Lin, Yuhao Qing, Haoze Song, Zihan Fang, Zhe Chen, Fangming Liu, Heming Cui, Wei Ni, Jun Luo

Research outputs 2022 to 2026

Deploying Machine Learning (ML) applications on resource-constrained mobile devices remains challenging due to limited computational resources and poor platform compatibility. While Mobile Edge Computing (MEC) offers an offloading-based inference paradigm using GPU servers, existing approaches can be divided into non-transparent and transparent methods, with the former necessitating source-code modifications. Non-transparent offloading achieves high performance but requires intrusive code changes, limiting compatibility with diverse applications. Transparent offloading, in contrast, offers wide compatibility but introduces two challenges: performance degradation under MEC's low and fluctuating bandwidth, where per-operator remote procedure calls (RPCs) inflate end-to-end latency and energy consumption; and black-box logic reconstruction, which …

Ai Tips And Traps, Patrick Barry

Books

Based on a series of popular courses and workshops that Professor Patrick Barry has created for students, professionals, and anyone else interested in taking a skills-based approach to artificial intelligence, this book gives you a chance to engage with important AI concepts, experiment with exploratory AI exercises, and then ultimately develop your own customized list of AI traps to try as well as AI traps to avoid.