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Syntheses And Evaluation Of Phthalocyanine Derivatives For Applications In Photodynamic And Boron Neutron Capture Therapies For Cancer, Hairong Li

LSU Doctoral Dissertations

Chapter I introduced the background of phthalocyanines including its physical properties and various synthetic methods of free-base and metallo-phthalocyanines. The background of PDT and BNCT was introduced and the objective of ideal sensitizers was described. Chapter II described the synthesis and characterization of a series of pyridiloxy-substituted zinc phthalocyanines with different length of alkyl groups. Pyridiloxy-substituted silica phthalocyanines bearing different associated axial ligands, were alkylated with methyl or PEG chains. Biological study was performed on these cationic pyridiloxy-substituted zinc phthalocyanines. Chapter III introduced the synthesis and photophysical properties of A3B-type zinc phthalocyanines conjugated with one or two cobalta-carborane cages. They …

Pyridinium Bisretinoids: Synthesis And Photoactivated Cytotoxicity, Junping Gao

Theses and Dissertations

This thesis discusses pyridinium bisretinoid compounds (PBRs), which were prepared for two purposes: 1) to use them as standards for detection of novel fluorophores in human RPE cells, which may be involved in age-related macular degeneration (AMD), and 2) to use them in the development of a targeted and triggered drug delivery system for cancer therapy. We prepared a selection of PBRs using a one-pot biomimetic method; synthesis, mechanisms for formation, and characterization of these compounds is described. We also explored the photoreactivity of three novel PBR compounds and found that these PBRs form oxidation products under blue-light irradiation. The …

A Study Of Avian Nest Predation At Audubon Acres In Chattanooga, Tn, Melea R. Langley

Masters Theses and Doctoral Dissertations

Predation is believed to be the primary cause of nesting mortality among North American migratory land birds. High rates of nest predation can jeopardize avian reproductive biology by affecting life histories and habitat selection. Artificial nests are commonly used to study nest predation because they allow the researcher to investigate comparative treatments and their impact on predation. Relative nest predation was studied at Audubon Acres in Chattanooga, TN using artificial nests. The study investigated differences in habitat types,nest heights, egg types, and predator types.

Search For Effective Natural Enemies Of Tetranychus Evansi (Acari: Tetranychidae) In Northwest Argentina, Imeuda P. Furtado, Silvana Toledo, Gilberto J. De Moraes, Serge Kreiter, Markus Knapp

All Peer-Reviewed Publications

The mite Tetranychus evansi Baker & Pritchard (Tetranychidae) probably originated in South America. Because of its importance as a tomato pest in Africa, an extensive project has been conducted to detect potentially effective natural enemies in South America for the classical biological control of the pest in Africa. A search for the natural enemies of T. evansi was conducted in the Province of Tucumán, northwestern Argentina, in December 2004, and this report describes the results. One hundred predatory mites of the family Phytoseiidae referring to 11 species were collected on 11 examined species of solanaceous plants. The most abundant phytoseiid …

A Simple Array Platform For Microrna Analysis And Its Application In Mouse Tissues, Xiaoqing Tang, Jozsef Gal, Xun Zhuang, Wang-Xia Wang, Haining Zhu, Guiliang Tang

Plant and Soil Sciences Faculty Publications

MicroRNAs (miRNAs) are a novel class of small noncoding RNAs that regulate gene expression at the post-transcriptional level and play a critical role in many important biological processes. Most miRNAs are conserved between humans and mice, which makes it possible to analyze their expressions with a set of selected array probes. Here, we report a simple array platform that can detect 553 nonredundant miRNAs encompassing the entire set of miRNAs for humans and mice. The platform features carefully selected and designed probes with optimized hybridization parameters. Potential cross-reaction between mature miRNAs and their precursors was investigated. The array platform was …

Benthic Mapping For Habitat Classification In The Peconic Estuary: Phase I Groundtruth Studies, Robert M. Cerrato, Nicole P. Maher

School of Marine & Atmospheric Sciences Faculty Publications

Benthic habitat maps of the estuary seafloor will increase our knowledge of range and variability in benthic habitats, will assist managers in their efforts to protect and/or restore commercially and recreationally important finfish and shellfish, will link land usage (e.g. developed vs. undeveloped areas) and water quality data to benthic habitat quality, and will make it possible to utilize faunal data as a long-term indicator of the overall “health” of the estuary. We are developing benthic habitat maps by combining high-resolution remote sensing techniques with detailed study of the physical and faunal characteristics at point locations in different seafloor environments. …

Psodascript: Applying Advanced Language Constructs To Open-Source Phylogenetic Search, Hyrum Carroll, Mark J. Clement, Jonathan Krein, Quinn O. Snell, Adam R. Teichert

Faculty Publications

Due to the immensity of phylogenetic tree space for large data sets, researches must rely on heuristic searches to infer reasonable phylogenies. By designing meta-searches which appropriately combine a variety of heuristics and parameter settings, researchers can significantly improve the performance of heuristic searches. Advanced language constructs in the open-source PSODA project—including variables, mathematical and logical expressions, conditional statements, and user-defined commands—give researchers a better framework for the exploration and exploitation of phylogenetic meta-search algorithms. PSODA’s approach to scripting meta-search algorithms is unique among open-source packages and addresses several limitations of other phylogenetic applications.

Managing The Recreational Catch Of Demersal Scalefish On The West Coast. Future Management Scenarios For Community Consideration, Jon Ford (Minister For Fisheries; The Kimberley, Pilbara And Gascoyne)

Fisheries Management Papers

This paper discusses the major issues around controlling the total recreational catch. It also considers some of the tools available to manage the catch to specific target levels. The sustainability of fish species must be a key driver. However, the impacts on the social amenity of recreational fishing must also be taken into account. Any particular tool, if used on its own and to its full extent, may be rather “blunt” in its application and its impacts unacceptable to large parts of the community. The most effective and acceptable management package will probably be a mix of tools, supported by …

An Adaptive Bayesian Approach To Bernoulli-Response Clinical Trials, Andrew W. Stacey

Theses and Dissertations

Traditional clinical trials have been inefficient in their methods of dose finding and dose allocation. In this paper a four-parameter logistic equation is used to model the outcome of Bernoulli-response clinical trials. A Bayesian adaptive design is used to fit the logistic equation to the dose-response curve of Phase II and Phase III clinical trials. Because of inherent restrictions in the logistic model, symmetric candidate densities cannot be used, thereby creating asymmetric jumping rules inside the Markov chain Monte Carlo algorithm. An order restricted Metropolis-Hastings algorithm is implemented to account for these limitations. Modeling clinical trials in a Bayesian framework …

The Role Of Early Detection And Rapid Response In Thwarting Amphibian And Reptile Introductions In Floridalorida, Todd S. Campbell

Managing Vertebrate Invasive Species

Prevention is the best policy for dealing with introduced species. However, biologists often spend an inordinate amount of time studying their spread and impacts rather than focusing on what should be done to thwart their establishment in the first place. Amphibian and reptile introductions are reaching epidemic proportions in Florida, largely due to irresponsible behavior by pet owners and the pet industry, but also due to ineffective preventive policies and actions. Prevention of additional amphibian and reptile introductions in Florida will require a comprehensive approach involving legal restrictions of certain problematic species, a massive public education effort, and a well-funded …

Wildlife Contraception: Targeting The Oocyte, Richard E. Mauldin, Lowell A. Miller

Managing Vertebrate Invasive Species

The USDA’s National Wildlife Research Center (NWRC) has successfully researched and developed a number of chemical and immunologically-based wildlife contraceptives. Diazacon™ interferes with cholesterol metabolism and disrupts steroidogenesis, while nicarbazin (registered as OvoControl-P® and OvoControl-G®) disrupts the structure of the vitelline membrane of bird eggs. Immunologically-based agents act to stimulate targeted antibody production. GonaCon™ causes the host’s immune system to bind gonadotropin releasing hormone, preventing ovulation, while SpayVac™ prevents fertilization of the postovulatory oocyte. This kind of target specificity can be highly advantageous. A number of oocyte-only control contraceptive strategies are currently being researched at the NWRC. 4-Vinylcyclohexene diepoxide (VCD) …

Development Of Informative Priors In Microarray Studies, Kassandra M. Fronczyk

Theses and Dissertations

Microarrays measure the abundance of DNA transcripts for thousands of gene sequences, simultaneously facilitating genomic comparisons across tissue types or disease status. These experiments are used to understand fundamental aspects of growth and development and to explore the underlying genetic causes of many diseases. The data from most microarray studies are found in open-access online databases. Bayesian models are ideal for the analysis of microarray data because of their ability to integrate prior information; however, most current Bayesian analyses use empirical or flat priors. We present a Perl script to build an informative prior by mining online databases for similar …

Slides: A Case Study Of The Roan Plateau Area, Mary Viviano

The Future of Natural Resources Law and Policy (Summer Conference, June 6-8)

Presenter: Mary Viviano, EnCana Oil & Gas (USA) Inc.

14 slides

Nicarbazin Ovocontrol G Bait Reduces Hatchability Of Eggs Laid By Resident Canada Geese In Oregon, Kimberly Bynum, John D. Eisemann, Gary C. Weaver, Christi A. Yoder, Kathleen A. Fagerstone, Lowell A. Miller

United States Department of Agriculture Wildlife Services: Staff Publications

Expanding populations of resident Canada geese (Branta canadensis) are resulting in increased conflicts with humans. Nonlethal and humane means are needed for managing Canada goose flocks at a variety of sites, including golf courses, industrial parks, government sites, and city parks. Decreased egg production and hatching are side effects of nicarbazin, a veterinary drug used to treat coccidiosis in chickens. Capitalizing on these effects, we developed nicarbazin as a reproductive inhibitor for Canada geese and conducted a field efficacy study. We recruited study sites in 2002 and 2003. Following laboratory testing, we conducted a field efficacy trial of …

A Sustainable Future For Fishing On Christmas Island. A Draft Five-Year Strategy For Managing Commercial, Recreational And Charter Fishing., Department Of Fisheries Western Australia.

Fisheries Management Papers

This draft strategy was developed by the Department of Fisheries, Western Australia, hereafter known as the “Department of Fisheries” which has responsibility for managing fish resources (within Territorial waters out to 12 nautical miles) on behalf of the Commonwealth Department of Transport and Regional Services (DoTARS), through the applied Fish Resources Management Act (FRMA) (WA)(CI) (the “Applied Act”). The Applied Act provides a legislative framework that allows for management arrangements to be developed specifically for Christmas Island. The management of fisheries in Western Australia uses an adaptive approach which balances the need for the effective management of fish stocks with …

Protein Design By Mining And Sampling An Undirected Graphical Model Of Evolutionary Constraints, John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg

Computer Science Technical Reports

Evolutionary pressures on proteins to maintain structure and function have constrained their sequences over time and across species. The sequence record thus contains valuable information regarding the acceptable variation and covariation of amino acids in members of a protein family. When designing new members of a protein family, with an eye toward modified or improved stability or functionality, it is incumbent upon a protein engineer to uncover such constraints and design conforming sequences. This paper develops such an approach for protein design: we first mine an undirected probabilistic graphical model of a given protein family, and then use the model …

Physical Property And Chemical Characteristics Of Surface Sediment Grab Samples From Narragansett Bay And The Providence And Seekonk Rivers, D. W. Murray, W L. Prell, C E. Rincon, E Saarman

Narragansett Bay Collection

This document contains data tables, maps, plots, and documentation on Brown

University’s Narragansett Bay Sediment Project compiled by David W. Murray, Brown

University, for the New England Interstate Water Pollution Control Commission with

support from the U.S. Environmental Protection Agency. The data were compiled and

analyzed as part of a New England pilot project exploring the development of a

biological condition gradient applicable to estuarine systems.

Wmi Outdoor News Bulletin * January 2007, Volume 61, No. 1

Wildlife Management Institute Outdoor News Bulletin

Contents:

• Aquatic Nuisance Species and Predator-Prey workshops at North American Conference

• Ruffed grouse have a plan

• Cellulose may soon take the starch out of ethanol

• Proposal for year-round drilling on critical big game range gains momentum and contention

• Reports of National Bison Range agreement demise prove to be greatly exaggerated

• 76th (2011) North American Conference slated

• Moguls may preempt habitat for threatened lynx

• WMI launches new Website

• Worth reading: The Golden Spruce

Kinetic Studies Of The Hydrolysis Reactions Of Ruthenium (Iii) Complexes Him Trans-[Rucl₄(Im)₂] And Hind Trans-[Rucl₄(Ind)₂] By Uv-Visible Spectrophotometry, Pramod K. Nangunuri

Master's Theses and Doctoral Dissertations

The ruthenium complexes have gained importance in cancer research in recent times, as several cancers have developed resistance towards platinum compounds. Platinum compounds have severe adverse effects that limited their use towards a wide range of tumors.

Ruthenium complexes are considered as pro-drugs, as they transform into antitumor active species in the body by hydrolysis, redox reactions, and reactions with biologically occurring nucleophiles. My project involved the synthesis of two ruthenium complexes with different ligands and the study of the hydrolysis reactions under different pH at room temperature using UV-visible spectrophotometry.

These studies will enable us to understand how structural …

Applications Of Trace-Element And Stable-Isotope Geochemistry To Wildlife Issues, Yellowstone National Park And Vicinity, Maurice A. Chaffee, Wayne C. Shanks Iii, Robert O. Rye, Charles C. Shwartz, Monique G. Adams, Robert R. Carlson, James G. Crock, Pamela A. Gemery-Hill, Kerry A. Gunther, Cynthia L. Kester, Harley D. King, Shannon R. Podruzny

United States Geological Survey: Publications

Reconnaissance investigations have been conducted to identify how geochemical techniques can be applied to biological studies to assist wildlife management in and near Yellowstone National Park (the Park). Many elements (for example, As, B, Be, Ce, Cl, Cs, F, Hg, K, Li, Mo, Rb, S, Sb, Si, and W) are commonly enriched in (1) thermal waters in the Yellowstone area, (2) rocks altered by these waters, (3) sinter and travertine deposits, and (4) soils and stream sediments derived from these rocks. Some of these elements, such as As, F, Hg, and Mo, may be toxic to wildlife and could be …

Drive-By Netting: A Technique For Capturing Grebes And Other Diving Waterfowl, Joe A. Caudell, Michael R. Conover

Human–Wildlife Interactions

We describe a new method (drive-by netting) for capturing grebes (Podiceps spp.) and other birds that dive under water to escape capture. We used a floating gill net to capture 203 eared grebes (Podiceps nigricollis) in 20 days in 1999 on the Great Salt Lake (GSL), 652 eared grebes in 41 days on the GSL in 2000, and 409 grebes in 20 days in 2001. Other species captured during the 2000 and 2001 fi eld seasons included 1 western grebe (Aechmophorus occidentalis), 9 ruddy ducks (Oxyura jamaicensis), and 1 Canada goose (Branta …

Drift Tube Ion Mobility Measurements For Thermochemistry, Kinetics And Polymerization Of Cluster Ions, Ridha Ben Mohsen Mabrouki

Theses and Dissertations

In this work, the Drift Tube Ion Mobility technique is used to study the hydrophobic hydration and solvation of organic ions and measure the thermochemistry and kinetics of ion-molecule reactions. Furthermore, an exploratory study of the intracluster polymerization of isoprene will be presented and discussed. The ion hydration study is focused on the C3H3+ cation1 and Pyridine▪+ radical cation.2 The chemistry of the cyclic C3H3+ cation1 has received considerable attention and continues to be an active area of research.3-7 The binding energies of the first 5 H2O molecules to c-C3H3+ were determined by equilibrium measurements. The measured binding energies of …

Design Synthesis And Evaluation Of Diterpenones As Potent Chemopreventive Agents For Aflatoxin B1 Induced Carcinogenesis In Human Liver Cells, Miguel Angel Zuniga

Theses and Dissertations

DESIGN, SYNTHESIS, AND EVALUATION OF DITERPENONES AS POTENT CHEMOPREVENTIVE AGENTS FOR AFB1 INDUCED CARCINOGENISIS IN HUMAN LIVER CELLS By Miguel A. Zuniga, Ph.D. A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at Virginia Commonwealth University. Major Director: Qibing Zhou, Ph.D Assistant Professor Department of Chemistry Terpene quinone methides (TPQMs) have been isolated from a variety of plants and show broad activities against bacteria, fungi, and cancerous cell lines. The biological activity has been attributed to the reactive electrophilic QM moiety, this structural feature has long been recognized as an intermediate in organic …

Synthesis And Properties Of Isoporphyrins And Related Derivatives For Application In Photodynamic Therapy, Sandra Celinah Mwakwari

LSU Doctoral Dissertations

Isoporphyrins are tautomers of porphyrins with an interrupted macrocyclic conjugation owing to the presence of a sp3 hybridized meso-carbon. Due to their absorption at long wavelengths (~800nm), isoporphyrins are potential candidates as photosensitizers in photodynamic therapy (PDT), a ternary modality of cancer treatment. They are also of biological interest due to their unique redox properties among porphyrin derivatives and could be a new class of near-IR dyes. Isoporphyrins are known to be unstable with respect to transformation back to the fully conjugated porphyrin chromophore except when the meso-carbon is geminally substituted and for this reason a detailed study of this …

The Spectral And Photophysical Characterization Of Water Solubilizing Metal Phthalocyanines For Highly Sensitive Detection In Biological Studies, Vera Tamisha Verdree

LSU Doctoral Dissertations

Efforts to improve the technology for DNA analyses stimulated the work presented here to develop a series of fluorescent probes that would aid in the increased multiplexing capabilities allowing the ability to detect multiple targets in a single measurement. Typically, spectral discrimination has been used to identify each DNA fragment in sequencing or diagnostic applications by means of unique emission properties from several labeling dyes. This has been accomplished with labels that fluoresce in the visible region. The limitations with these dyes is the broad emission profile making discrimination difficult, high intrinsic biological fluorescence and structural differences of the dyes …

Syntheseses [Sic] And Evaluation Of Porphyrin Derivatives For Applications In Medicine And In Material Science, Erhong Hao

LSU Doctoral Dissertations

Chapter 1 presents a concise introduction to porphyrins, especially on the synthesis of meso-tetraphenylporphyrins, which were synthesized during the course of my research and were used for further purposes in the following chapters. Chapter 2 describes the synthesis of a series of cobaltacarborane-porphyrin conjugates for the boron neutron capture therapy (BNCT) of tumors. Using an efficient and high yield ring-opening reaction, N-substituted porphyrins were also synthesized. The spectroscopic and structural properties of these compounds are presented. These high percentage boron and amphiphilic compounds are promising boron delivery agents for BNCT (prelimary cellular studies using some of these compounds have been …

Synthesis And Functionalizations Of Tetrapyrrole Derivatives, Lijuan Jiao

LSU Doctoral Dissertations

Chapter 1 of this Dissertation presents a brief overview of the history of tetrapyrrole derivatives and of their fundamental properties. Overviews of porphyrins, benzoporphyrins, chlorins and porphycenes are presented. Work presented in Chapter 2 through Chapter 4 mainly focuses on the syntheses and functionalization of chromophore-extended porphyrin derivatives. Several new synthetic routes for the syntheses and functionalizations of extended porphyrins either at the β-position or at the meso-position of porphyrin are developed. From these improved synthetic routes, the regio-selective syntheses of porphyrin derivatives are described. Chapter 2 mainly focuses on the syntheses of β,β'-fused methylenepropanoporphyrins and related porphyrin dimers. Chapter …

Light Environment And Seasonal Dynamics Of Microalgae In The Annual Sea Ice At Terra Nova Bay, Ross Sea, Antarctica, L. Lazzara, I. Nardello, C. Ermanni, O. Mangoni, V. Saggiomo

OES Faculty Publications

We investigated the physical conditions of the Spring pack ice environment at Terra Nova Bay to understand their influence on the structure and physiology of sympagic microalgae. Bio-optical methods were used to study the availability and spectral quality of solar radiation, both inside and underneath the ice cover. Pack ice thickness was around 2.5 m, with a temperature between -2 and -7°C. On average, only 1.4% of surface PAR penetrated to the bottom ice and less than 0.6% below platelet ice level. Surface UV-B radiation under the bottom ice was 0.2-0.4%. Biomass concentrations up to 2400 mg Chl a m- …

Geologic Map And Structural Analysis Of The Twin Rocks 7.5 Minute Quadrangle, Wayne County, Utah, Samuel C. Sorber

Theses and Dissertations

A new geologic map of the Twin Rocks 7.5 minute quadrangle primarily located within Capitol Reef National Park, south-central Utah, provides stratigraphic and structural detail not previously available. This map has also been instrumental in understanding the evolution and development of fluvial terraces associated with Sulfur Creek and the structural geology of the backlimb of the Miners Mountain uplift. Nine bedrock stratigraphic formations and eight types of Quaternary deposits were mapped throughout the quadrangle. Bedrock stratigraphy ranges in age from Permian to Jurassic. New details absent on previous geologic maps include members of the Chinle and Moenkopi Formations and the …

Penalized Splines For Longitudinal Data With An Application In Aids Studies, Hua Liang, Yuanhui Xiao

Journal of Modern Applied Statistical Methods

A penalized spline approximation is proposed in considering nonparametric regression for longitudinal data. Standard linear mixed-effects modeling can be applied for the estimation. It is relatively simple, efficiently computed, and robust to the smooth parameters selection, which are often encountered when local polynomial and smoothing spline techniques are used to analyze longitudinal data set. The method is extended to time-varying coefficient mixed-effects models. The proposed methods are applied to data from an AIDS clinical study. Biological interpretations and clinical implications are discussed. Simulation studies are done to illustrate the proposed methods.