Digital Commons Network^™

Population Demography, Occupancy, And Connectivity Of Invasive Bigheaded Carp In The Platte River, Nebraska And Its Tributaries, Blake W. Logan

School of Natural Resources: Dissertations, Theses, and Student Research

Silver Carp Hypophthalmichthys molitrix and Bighead Carp H. nobilis, collectively referred to as bigheaded carp, are invasive species in the United States of America that have expanded their range throughout the Missouri River basin in the last three decades. It may be desirable to develop management plans directed at the monitoring, control, or removal of bigheaded carp within the Missouri River basin. However, a knowledge gap exists regarding bigheaded carp ecology in Missouri River tributaries, which may be important for the development of management plans. As such, this study characterized bigheaded carp population demographics, occupancy, and connectivity in …

Virtual Fencing In Livestock Management: Effects On Beef Cattle Stress And Enhancing Wildlife Conservation, Kaitlyn E. Dozler

School of Natural Resources: Dissertations, Theses, and Student Research

I examined the effects of virtual fencing on beef cattle stress and how implementing the technology can aid wildlife habitat conservation at the University of Nebraska Gudmundsen Sandhills laboratory (GSL) near Whitman, NE. First, I examined how virtual fencing influences acute heart rate changes in beef cattle fitted with the virtual fencing collars. No significant difference in the average heart rate of a cow (P > 0.05) was observed between the 30 min control and virtual fenced periods for both trial dates. Second, I examined the influence of topography on wildlife species richness and presence at GSL using wildlife camera …

Spatial Ecology Of Mountain Lions Throughout Their Distribution In California, Kyle D. Dougherty

School of Natural Resources: Dissertations, Theses, and Student Research

Mountain lions (Puma concolor) have been studied extensively throughout their wide geographic distribution in the Western Hemisphere, but most research has been conducted at relatively small spatial scales. We used GPS telemetry data contributed by researchers in 16 study areas throughout California to advance understanding of mountain lion spatial ecology. First, we investigated multi-scale resource selection of mountain lions relative to spatially varying risk of intentional human-caused mortality associated with livestock depredation management. We show that individuals that proactively avoided mortality risk when selecting home ranges were able to relax their avoidance of risk when making resource selection …

Hybridization Between The Rare Gray-Headed Chickadee And The Abundant Boreal Chickadee In The Midst Of Shifting Climate, Matthew R. Armstrong

School of Natural Resources: Dissertations, Theses, and Student Research

As species respond to changing climate, distributions and abundances may shift and alter species interactions. Hybridization, a relatively widespread phenomenon becoming more common with climate change, can have beneficial and detrimental effects on population growth rates and genetic integrity. Beneficial effects due to the introduction of advantageous alleles and increased genetic diversity may result from hybridization. Species may also accrue fitness costs associated with changing climates if mismatches occur between environmental variables and phenotypes. The gray-headed chickadee, Poecile cinctus lathami, is an extremely rare songbird that has experienced marked declines in recent decades within its restricted distribution in Alaska …

Assessing Rice Phenological Features With Hyperspectral Imaging Insights From Earth Surface Mineral Dust Source Investigation (Emit), Shahryar Fazli, Wenzhao Li, Surendra Maharjan, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

In California's Central Valley, water management and crop health, particularly in rice cultivation, are critical. This paper details the application of Earth surface Mineral dust source InvesTigation (EMIT) hyperspectral imaging, specifically employing Spectral Correlation Mapper (SCM) and Spectral Information Divergence (SID), for precise phenological analysis. By aligning EMIT data with Hyperion satellite references, we address spectral and geographical discrepancies. Our methodology includes seasonal sampling of spectral curves to capture the phenological stages of rice. Results show a strong correlation (R ² = 0.86) between August EMIT and Reference dataset, emphasizing EMIT's utility in enhancing agricultural practices and water efficiency in …

Crosssections, Summer 2024, University Of Northern Iowa. Department Of Physics.

CrossSections

Contents:

A Message from the Department Head, Dr. Paul Shand --- 01
New Secretary --- 02
Homecoming Picnic --- 03
Visits to the Department --- 04
Awards Banquet --- 05
Begeman Lecture --- 05
Physics Competition --- 06
Holiday Colloquium --- 06
Tim Kidd Lecture --- 07
Faculty Profile - Larry Escalada --- 07
Student Profile - Ashley Harrington --- 08
Student Research - Haley Harms --- 10
Physics Scholarships and Awards --- 12
Teacher Education Transformation --- 13
Alumni Profile - Justin Bohnet --- 14
Alumni News - Corey Cooling --- 15
Alumni News - John Bolte --- 16 …

The Colorado Wolf Reintroduction Portrayal In News Media, Megan K. Mcarthur, Monica V. Ogra

Student Publications

The Colorado gray wolf (Canis lupus) reintroduction began in December 2023 in the hope of restoring this once native population to the area, and it has received mixed responses from the media. By answering the research question of 'How has the wolf reintroduction in Colorado been framed in news media?', this research poster looks at the portrayal of the reintroduction in news articles from six months before and after the first wolves were released. Media is an influential factor in people's opinions and it is important to be aware of the information being shared and any bias within them.

Enhancing Security In Modern Medical Devices: The Medicalharm Methodology And Cyberllama2, Emmanuel Kwarteng

Dissertations (1934 -)

With the rapid growth of Modern Medical Devices (MMDs) and their increasing connectivity to enhance patient care, concerns about security, privacy, and safety are paramount. If compromised, these devices can expose sensitive patient information and harm patients. Therefore, securing MMDs against cyber-attacks is critical. Threat modeling, mandated by the FDA as a premarket submission requirement in the MMD domain, serves as the first defense mechanism. However, our investigation of 119 participants from various MMD manufacturing companies revealed a need for a tailored threat modeling methodology that considers both patient safety and device complexity. To address this, we present MEDICALHARM, a …

Nonlocal Frameworks For Nonlinear Conservation Laws And Advection-Diffusion Processes, Anh Thuong Vo

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Conservation laws are fundamental principles that play an important role in modeling various phenomena in physics, chemistry, and biology. However, their limitations, such as the development of shocks despite smooth initial conditions, are well known. The nonlocal model framework can be used to overcome these challenges. Nonlocal frameworks utilize integral operators that mimic differential operators but also incorporate long-range interactions within a finite horizon. This approach not only allows for non-smooth solutions, but also provides flexibility in modeling different phenomena. This study investigates the convergence of nonlocal divergence operators, defined with a general flux density function, to their classical counterparts. …

Missing History Of A Modern Domesticate: Historical Demographics And Genetic Diversity In Farm-Bred Red Fox Populations, Halie M. Rando, Emmarie P. Alexander, Sophie Preckler-Quisquater, Cate B. Quinn, Jeremy T. Stutchman, Jennifer L. Johnson, Estelle R. Bastounes, Beata Horecka, Kristina L. Black, Michael P. Robson, Darya V. Shepeleva, Yury E. Herbeck, Anastasiya V. Kharlamova, Lyudmila N. Trut, Jonathan N. Pauli, Benjamin N. Sacks, Anna V. Kukekova

Computer Science: Faculty Publications

The first record of captive-bred red foxes (Vulpes vulpes) dates to 1896 when a breeding enterprise emerged in the provinces of Atlantic Canada. Because its domestication happened during recent history, the red fox offers a unique opportunity to examine the genetic diversity of an emerging domesticated species in the context of documented historical and economic influences. In particular, the historical record suggests that North American and Eurasian farm-bred populations likely experienced different demographic trajectories. Here, we focus on the likely impacts of founder effects and genetic drift given historical trends in fox farming on North American and Eurasian farms. A …

Epbc 2010/5491: Weaber Plain Development Project Compliance Report - 1st May 2023 To 30th April 2024, Department Of Primary Industries And Regional Development, Western Australia

Irrigated Agricultural Development in the North

The Weaber Plain Development Project (Goomig Project) was approved on 13 September 2011. The approval reference is EPBC 2010/5491 (the Approval).

The Goomig Project comprises irrigated farmland, associated infrastructure, and a buffer area on the Weaber Plain located about 30km north-northeast of Kununurra in Western Australia. Figure 1 shows the location and layout of the Goomig Project and interface with other projects including the Knox Creek Plain Irrigation Development (EPBC 2014/7143), Sorby Hills Silver Lead Zinc mining project, and Ord River Irrigation Area (ORIA) Stage 1 'Cave Springs' farms.

The Department of Primary Industries and Regional Development is the Goomig …

Ecological Effects On Greenhouse Gas Emissions In Vegetated Estuarine Soils Of The Lower Laguna Madre, David R. De La Garza

Theses and Dissertations

Coastal wetlands are important ecosystems that provide numerous ecosystem services including erosion control, habitat for fauna, and carbon sequestration. Notably, coastal wetlands are producers of greenhouse gases (GHGs) but are able to store significant amounts of carbon relative to their surface area. Mangrove forests are amongst the most effective ecosystems for carbon sequestration. Soil emits (GHGs) containing carbon (such as carbon dioxide (CO2) and methane (CH4)), which are produced by organic matter decomposition and soil organic carbon mineralization, and both are an important component of the global carbon cycle. Soil emissions may be affected by a variety of factors including …

Diffuse Reflectance Spectroscopy For Optical Characterizations Of Orthotopic Head And Neck Cancer Models In Vivo, Pranto Soumik Saha, Jing Yan, Caigang Zhu

Markey Cancer Center Faculty Publications

We demonstrated an easy-to-build, portable diffuse reflectance spectroscopy device along with a Monte Carlo inverse model to quantify tissue absorption and scattering-based parameters of orthotopic head and neck cancer models in vivo. Both tissue-mimicking phantom studies and animal studies were conducted to verify the optical spectroscopy system and Monte Carlo inverse model for the accurate extraction of tissue optical properties. For the first time, we reported the tissue absorption and scattering coefficients of mouse normal tongue tissues and tongue tumor tissues. Our in vivo animal studies showed reduced total hemoglobin concentration, lower tissue vascular oxygen saturation, and increased tissue scattering …

Response To Replication Stress And Maintenance Of Genome Stability By Wrn, The Werner Syndrome Protein, David K. Orren, Amrita Machwe

Markey Cancer Center Faculty Publications

Werner syndrome (WS) is an autosomal recessive disease caused by loss of function of WRN. WS is a segmental progeroid disease and shows early onset or increased frequency of many characteristics of normal aging. WRN possesses helicase, annealing, strand exchange, and exonuclease activities and acts on a variety of DNA substrates, even complex replication and re- combination intermediates. Here, we review the genetics, biochemistry, and probably physiological functions of the WRN protein. Although its precise role is unclear, evidence suggests WRN plays a role in pathways that respond to replication stress and maintain genome stability particularly in telomeric regions.

Assessing The Gut Content Of Styela Plicata: A Benthic Filter Feeder In The Indian River Lagoon, Honor Lily Triumph Edmands

Theses and Dissertations

The Indian River Lagoon (IRL) has experienced declining water quality due to human activities involving nutrient input, leading to Harmful Algal Blooms (HABs). The Living Docks program affixes oyster mats to dock pilings to promote the settlement and recruitment of benthic filter feeders for water quality improvement. However, questions remain about filtering efficiencies of organisms that make up the mat communities, and whether organisms remove harmful species from the IRL. The pleated sea squirt, Styela plicata, is a common oyster mat resident. The goal of this thesis was to investigate what phytoplankton and bacteria S. plicata consumes, and if …

How People Prompt Generative Ai To Create Interactive Vr Scenes, Setareh Aghel Manesh, Tianyi Zhang, Yuki Onishi, Kotaro Hara, Scott Bateman, Jiannan Li, Anthony Tang

Research Collection School Of Computing and Information Systems

Generative AI tools can provide people with the ability to create virtual environments and scenes with natural language prompts. Yet, how people will formulate such prompts is unclear---particularly when they inhabit the environment that they are designing. For instance, it is likely that a person might say, "Put a chair here,'' while pointing at a location. If such linguistic and embodied features are common to people's prompts, we need to tune models to accommodate them. In this work, we present a Wizard of Oz elicitation study with 22 participants, where we studied people's implicit expectations when verbally prompting such programming …

New Insights On Hybridization In Potamogeton Floridanus (The Florida Pondweed), Kaitlyn R. Sampson

Graduate Theses and Dissertations (2019 - present)

Freshwater ecosystems are some of the most important and highest threatened habitats in the world, and aquatic plants play an important, but often-overlooked, role in maintaining them. Potamogeton is a diverse and ecologically important aquatic plant genus well known for taxonomic difficulty and rampant hybridization. lbis study aimed to 1) test the hypothesis that Potamogeton jloridanus (Florida pondweed) is a hybrid between P. oakesianus and P. pulcher, and 2) to investigate correlations in ecological conditions for the focal species. This study revealed the discovery of a new population of P. jloridanus in Big Coldwater Creek in Santa Rosa Co., FL, …

Heat Stress Changes The Bovine Methylome And Transcriptome And Investigation Of Two Novel Genetic Defects In Cattle, Rachel Renae Reith

Department of Animal Science: Dissertations, Theses, and Student Research

Heat stress is a major concern for livestock producers due to its negative impact on animal health and productivity. Heat stress does so by altering expression of genes through different regulatory mechanisms such as DNA methylation. Understanding how heat stress alters gene expression will help elucidate the genetic basis of physiological changes as well as identify targets for possible heat stress mitigation. The purpose of the first study was to understand how heat stress alters the adipose and skeletal muscle transcriptomes in zilpaterol-fed Brahman, as zilpaterol improves muscle growth and may mitigate the effects of heat stress. Differential expression and …

Testing Multiple Environmental Dna Substrates For Detection Of The Cryptic And Critically Endangered Burrowing Freshwater Crayfish Engaewa Pseudoreducta, Kathryn L. Dawkins, Paul Nevill, Brian Chambers, Shane Herbert, Quinton F. Burnham

Research outputs 2022 to 2026

Effective conservation of endangered species depends on knowledge of their distributions, but species detection can often be challenging. An example of this is provided by the Critically Endangered Margaret River burrowing crayfish (Engaewa pseudoreducta), which is highly cryptic. Due to the burrowing habit of this crayfish, detection of this species currently requires a great deal of effort, the results are often non-conclusive, and, as it involves manual excavation of their burrows, the habitat of this and other species is destroyed in the detection process. In response to these challenges, this study developed and optimized a species-specific probe-based qPCR assay targeting …

Transforming Place-Based Management Within Watersheds In Fiji: The Watershed Interventions For Systems Health Project, Stacy D. Jupiter, Aaron P. Jenkins, Joel Negin, Shylett Anthony, Ponipate Baleinamau, Rachel Devi, Sikeli Gavidi, Alice Latinne, Kini Koto Mailautoka, Sangeeta Mangubhai, Kelera Naivalu, Timoci Naivalulevu, Vilisi Naivalulevu, Nabeela Nasim, Sikeli Naucunivanua, Sarah Nelson, Ingrid Qauqau, Anaseini Ratu, Mereia Ravoka, Jacqueline Thomas, Andrew Tukana, Paul Van Nimwegen, Ama Wakwella, Amelia Wenger, Donald Wilson, Pierre Horwitz

Research outputs 2022 to 2026

Watersheds offer opportunities for place-based interventions to transform systems health via preventative versus reactive approaches to management that achieve multiple co-benefits for public and environmental health. The Watershed Interventions for Systems Health in Fiji (WISH Fiji) project embraced participatory knowledge co-production and action-oriented research to identify risks to public and ecosystem health, prioritize interventions to address risks, and monitor responses of the system to interventions. We used screening filters and local knowledge to collaboratively identify five watersheds for action with high prior incidence of water-related diseases (Fiji’s “three plagues” of leptospirosis, typhoid and dengue) and high risk to downstream environmental …

Urban Soil Compaction Remediation By Shallow Tillage And Compost In Hydroseeded Lawn, James Jihoon Kang, Adam Flores, Engil Isadora Pujol Pereira, Jungseok Ho

School of Earth, Environmental, & Marine Sciences Faculty Publications

Construction activities often involve removal of topsoil and compaction of the exposed soil by heavy equipments. Such compacted soils with low organic matter can lead to low infiltration and poor vegetation establishment. The objective of this study was to investigate the efficacy of tillage (shallow till) and compost on soil physical and biological properties in a hydroseeded lawn as a post-construction best management practice for soil compaction remediation. The experimental site received a total of four land treatments in five replicated trials and it was hydroseeded with common Bermuda grass: 1) No Tillage + Compost (NT-C), 2) No Tillage + …

Explainable Artificial Intelligence: Methods And Evaluation, Gayane Grigoryan

Engineering Management & Systems Engineering Theses & Dissertations

A wide array of techniques within explainable artificial intelligence (XAI) have been developed to measure the importance of features in machine learning models. A notable portion of these methods draws upon principles of cooperative game theory (CGT), with the Shapley value emerging as a widely used solution concept. Despite the rising prominence of the Shapley value, other promising solutions from cooperative game theory—such as the Nucleolus, Banzhaf power index, Shapley-Shubik power index, and solutions to conflicting claims problems—have been comparatively overlooked, even though they hold significant potential. In this dissertation, multiple XAI methods based on these other CGT solutions are …

Contributions To Nonparametric Testing In Clustered Data, Hasika Kalani Wickrama Senevirathne

Mathematics & Statistics Theses & Dissertations

Clustered data refers to a specific kind of correlated data where units within the same cluster are correlated while units from different clusters are independent. The number of units in each cluster, known as the cluster size, can be associated with the cluster’s outcome. This is known as the informative cluster size (ICS) and affects the inference drawn from clustered data. Recently, a hypothesis testing method has been developed to detect the presence of ICS. However, considering ICS alone may not be sufficient when comparing outcomes across multiple groups of units within clustered data. The size of a group within …

Surfacing Text Changes In Archived Webpages, Lesley Frew

Computer Science Theses & Dissertations

Webpages change over time, and web archives hold copies of historical versions of webpages. Users of web archives, such as journalists, want to find and view changes on webpages over time. However, the current search interfaces for web archives do not adequately support this task. For the web archives that include a full-text search feature, multiple versions of the same webpage that match the search query are shown individually without enumerating changes, or are grouped together in a way that hides changes. We present a change text search engine that allows users to find changes in webpages. We describe the …

Safe And Efficient Operation Of Mobile Robots In Indoor Environments: A User-Centric Shared Control System With High-Level Navigation Capabilities, Ahmet Saglam

Electrical & Computer Engineering Theses & Dissertations

Hospitalization and isolation can be a traumatic experience for immunocompromised children, especially because they are separated from their families and friends. Social robots have been proposed as a way to improve the quality of care for children hospitalized in isolation by providing alternative means of social interaction and support. Remote control of such robots in a hospital setting, particularly where safety is a major concern, can be a daunting task for young patients.

This dissertation introduces a multilevel shared control system for mobile robots, specifically companion robots in hospital-like indoor spaces. The system integrates user inputs with algorithmic semi-autonomous control …

The Ecological Applications Of Δ17O: Validating A Novel Technique For Assessing Animal Metabolism And Water Intake, Zachary Taylor Steele

Biological Sciences Theses & Dissertations

Animals obtain water via different processes such as drinking, consuming food, and through metabolic processes like at the end of the electron transport chain when atmospheric oxygen is combined with hydrogen to form ‘cytochrome oxidase water’. Assessing animal water flux and metabolism has mainly been conducted via stable isotope analysis (SIA) of biological samples using hydrogen (²H) and oxygen isotopes (¹⁶O, ¹⁷O, and ¹⁸O; Δ¹⁷O), typically using enriched isotope tracers. However, natural abundance isotope modeling offers an approach for conducting SIA of biological samples that differs because it relies on the unique, …

Exploring The Effects Of An Alfalfa Leaf-Derived Adsorbent On Microbial Community, Ileal Morphology, Barrier Function, And Immunity In Turkey Poults During Chronic Aflatoxin B1 Exposure, Maria De Jesus Nava-Ramirez, Jing Liu, Juan Omar Hernandez-Ramirez, Xochitl Hernandez-Velasco, Juan D. Latorre, Alma Vazquez-Duran, Guolong Zhang, Roberto Señas-Cuesta, Sergio Gomez-Rosales, Andressa Stein, Billy M. Hargis, Guillermo Tellez-Isaias, Abraham Mendez-Albores, Jesus A. Maguey-Gonzalez

Poultry Science Faculty Publications and Presentations

This article follows-up on our recently published work, which evaluated the impact of the addition of an alfalfa leaf-derived adsorbent in the aflatoxin B₁ (AFB₁)-contaminated diet in regard to the production parameters, blood cell count, serum biochemistry, liver enzymes, and liver histology of turkey poults. This paper presents complementary results on microbial community, ileal morphology, barrier function, and immunity. For this purpose, 350 1-day-old female turkey poults were randomly distributed into five groups: (1) Control, AFB₁-free diet; (2) AF, AFB₁-contaminated diet at 250 ng/g; (3) alfalfa, AFB₁-free diet + 0.5% ( …

T. Boudieri Extract Potentiates The Effects Of Capecitabine Treatment In Human Colon Cancer Cells, Katia Sawaya, Mahmoud Khalil, Ghada Khawaja

BAU Journal - Science and Technology

Resistance to chemotherapy remains a major challenge for colorectal cancer patients worldwide, hence the persistent need to uncover alternative treatments as well as new adjunct therapies in the fight against cancer. Natural extracts constitute an excellent source of bioactive substances that have a promising potential in that regard, with minimal negative side effects. We have previously demonstrated that both the ethanolic as well as the water extracts of Terfezia boudieri, a black desert truffle abundant in and part of the cuisine of the Mediterranean region, have significant antiproliferative effects against colon cancer cells. Our aim in this study was …

Analysis Of Genetic Engineering Material Misconceptions In Biology Textbooks For Ninth-Grade In Yogyakarta, Silfi Pratiwi, Purwanti Pratiwi Purbosari, Oktira Roka Aji, Rinaldi Rizal Putra

Jurnal Pendidikan Sains

Textbooks play a pivotal role in the pedagogical landscape, serving as indispensable aids for learning, founts of knowledge, and platforms for practical application. This study endeavors to scrutinize the content of textbooks, specifically focusing on ninth-grade biology textbooks within the educational milieu of Yogyakarta City, and to juxtapose these contents with existing literature to discern potential misconceptions. Employing a descriptive qualitative approach, the investigation centers on printed biology textbooks utilized in ninth-grade curricula across junior high schools in Yogyakarta. The selection of textbooks for analysis was based on their prevalence as instructional materials, as determined through survey data. Genetic engineering …

Metabolomics Analysis Reveals Metabolite Diversity Of The Rare Cliff Plant Oresitrophe Rupifraga Unge, Hao Wang, Jinjun Cao, Sheng Chang, Caifeng Yan, Guangming Zhang

Faculty, Staff and Student Publications

Oresitrophe is monotypic, with the only species, Oresitrophe rupifraga Bunge, which is exclusive to China, having special growth and developmental traits due to its habitat. Furthermore, it has bright flowers and medicinal benefits. This study investigated the metabolites present in various tissues of Oresitrophe rupifraga Bunge. Using a widely targeted metabolomics approach, 1965 different metabolites were identified in Oresitrophe rupifraga Bunge. Based on principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA), the aboveground and underground metabolites of Oresitrophe rupifraga differed significantly. The comparison between bulblets and leaves revealed the differential expression of 461 metabolites, whereas the …