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Challenges And Artificial Intelligence Solutions For Clinically Optimal Hepatic Venous Vessel Segmentation, Håvard Bjørke Jenssen, Varatharajan Nainamalai, Egidijus Pelanis, Rahul P. Kumar, Andreas Abildgaard, Finn Kristian Kolrud, Bjørn Edwin, Jingfeng Jiang, Joseph Vettukattil, Ole Jakob Elle, Smund Avdem Fretland

Michigan Tech Publications

Background:: Liver vessel identification is crucial for clinical disease assessment and treatment planning, especially concerning local treatment of liver tumors. As artificial intelligence (AI) develops in radiology, opportunities arise to craft models adept at hepatic venous vessel segmentation, opening possibilities for creating patient-specific models of the liver anatomy quickly, despite the diverse features of CT images encountered in clinical settings. Objective: This research evaluates the performance of AI models combined with various pre-processing filters for liver vessel segmentation, emphasizing clinically relevant results. A novel evaluation method was introduced to offer more anatomically accurate assessments, moving beyond traditional metrics like the …

Remote Detection Of Pest Damage And Tree Health In Tart Cherry, Christina Klara Lilligren

All Graduate Theses and Dissertations, Fall 2023 to Present

With the increasing affordability of technology, using technological advancements to assess tree health might soon become a possibility in low input crops such as tart cherry. We evaluated the ability of drone-mounted multispectral cameras, ceptometry

(canopy density), and soil conductivity meters (soil texture) to predict pest occurrence and remotely detect tree health. Pest scouting data were compared to the different technological datasets to identify the possibility of use for pest detection. While drone-mounted multispectral cameras were able to identify chlorotic trees, powdery mildew was not reliably detectable under a management threshold with current multispectral camera technology. Trees with low canopy …

Water Conservation Strategies For Growing Ornamental Plants In Utah Landscapes, Jenny L. Koller

All Graduate Theses and Dissertations, Fall 2023 to Present

When early pioneers settled in Utah, they faced challenges living in a dry region with limited water. They built dams, canals, and irrigation systems by working together as a community to manage their water needs. However, adoption of European landscaping methods, farming and rapidly growing population increased water need while climate change and frequent drought reduced water supply.

Today, Utah is one of the driest states and uses more water per person than most other states in the nation. If things don't change, the state could run out of water by 2060. To address Utah's growing water challenges, this research …

Early And Late Season Weed Control In Dormant Alfalfa, Mckenna Saige Barney

All Graduate Theses and Dissertations, Fall 2023 to Present

Hexazinone + diuron is an herbicide mix commonly used to control weeds in established alfalfa in the late fall or early spring when alfalfa is dormant. If applied outside full dormancy, this mix can cause significant crop injury. The Intermountain West’s cold weather leaves a narrow time frame for applicators to apply herbicide. To help extend the application period to when alfalfa has not yet entered complete dormancy, the burndown herbicide paraquat can be added to the tank mix. Paraquat burns back existing plant matter to prevent hexazinone + diuron from spreading throughout the plant and causing long-term crop injury. …

Development Of A Machine Learning Framework For An Irrigation Decision Support System, Eric Wilkening, Derek M. Heeren, Yeyin Shi, Laila A. Puntel, Guillermo R. Balboa, Abia Katimbo, Kuan Zhang, Precious Nneka Amori, Bruno Lena

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Currently used irrigation scheduling techniques often require significant human intervention and are time consuming, particularly for variable rate irrigation. This research aimed to develop a conceptual framework that incorporates disparate data sources leveraging both mechanistic and machine learning (ML) approaches. The overarching objective is to utilize the growing availability of data and technology to manage irrigation more precisely, which will minimize negative impacts of irrigation on our water resources. An initial irrigation machine learning model was proposed and tested in this study as a key component of an edge-cloud computing and federated learning decision-making framework. The specific objectives were (1) …

Systematics, Evolution, And Species Delimitation Of Ichneumonidae (Hymenoptera) Based On Ultraconserved Element Phylogenomics, Brandon Ross Claridge

All Graduate Theses and Dissertations, Fall 2023 to Present

The diversity of life on Earth is highly skewed towards a few key groups of organisms. Parasitoid wasps are among the most species-rich yet understudied organisms on our planet. Ichneumonidae, the largest parasitoid wasp family, includes 25,000 known species out of an estimated total of 100,000, far exceeding the nearly 70,000 species of vertebrates. As parasitoids, ichneumonids lay a single egg onto or inside their hosts, and the resulting ichneumonid larva consumes its host, ultimately killing it. Most hosts are the larvae or pupae of moths, butterflies, flies, beetles, and other wasps, including many pest species injurious to agriculture and …

Improving Seasonal Precipitation Forecasts In The Western United States Through Statistical Downscaling, Bradley Vernon

All Graduate Theses and Dissertations, Fall 2023 to Present

Seasonal precipitation forecasts are essential tools for water management, especially in drought-prone areas like the Western United States. While global forecasting systems can predict precipitation months to years in advance, these forecasts are typically produced at a coarse spatial resolution due to high computational costs – especially when multiple forecast iterations, or ensemble members, are included. This coarse resolution limits their ability to capture localized weather features, such as those shaped by the complex terrain of the Intermountain West. Here, analog statistical downscaling is demonstrated as an effective approach to enhance the spatial resolution of operational seasonal forecasts provided by …

Optimization Of The Root Zone In Controlled Environment Agriculture, Brendan Fatzinger

All Graduate Theses and Dissertations, Fall 2023 to Present

Controlled environment agriculture (CEA) helps grow plants in spaces where resources like water and nutrients are limited, such as deserts or spacecraft. Effective management of water in the root zone, the area where plant roots grow, is vital to keeping plants healthy, especially in closed-loop systems where water cannot be wasted, as will be necessary for long-duration space missions.

An improved automated watering system designed for use in space-like environments was developed over several trials. Early designs using suction to draw water through tubes faced problems with uneven watering and roots blocking the tubes. Switching to a system that pushed …

From Rifles To Running Shoes: How Outdoor Recreation Trends Are Reshaping Conservation Efforts, Lane James Arthur

All Graduate Theses and Dissertations, Fall 2023 to Present

Parks and protected areas (PPAs) serve a dual purpose: they conserve wildlife and natural habitats while providing spaces for people to enjoy outdoor recreation. However, balancing conservation with recreation can be challenging, especially as outdoor activities continue to grow and evolve. In Utah, Wildlife Management Areas (WMAs) are set aside to protect important wildlife habitats and provide opportunities for hunting and fishing. Recently, these areas have seen an increase in activities such as mountain biking, trail running, and dog walking, some of which take place in areas which prohibit recreational activity in effort to protect wildlife. These shifts in recreation …

Intra-Stand Movement Of Balsam Woolly Adelgid (Adelges Piceae) In The Intermountain West, Michael S. Wayman

All Graduate Theses and Dissertations, Fall 2023 to Present

Balsam woolly adelgid (BWA, Adelges piceae (Ratz.)) is an invasive insect of true firs (Abies spp.). BWA has spread from initial introductions on the west coast of North America in the 1920s through the Intermountain West and has recently invaded Utah. White fir (A. concolor) and subalpine fir (A. lasiocarpa) are the two main species of concern in this region; however, subalpine fir has been found to be more susceptible to attack and subsequent damage. While long-range dispersal mechanisms and patterns are of interest for spread across regions and for predicting new infestations, very little …

Evaluating Maternal Polar Bear Denning Habitat Along The Arctic Coastal Plain And Assessing The Potential For Noise Disturbance In Polar Bear Dens, Ethan Ducharme

All Graduate Theses and Dissertations, Fall 2023 to Present

Polar bears (Ursus Maritimus) in northern Alaska are increasingly choosing land instead of sea ice to build their maternity dens. As sea ice continues to decline due to climate change, this shift makes it more important than ever to identify and protect the areas where polar bears dig dens to give birth and raise their cubs. In the first part of my research, I used new satellite-based elevation data to map potential polar bear denning habitat across a large section of Alaska’s Arctic Coastal Plain. This technology allowed me to identify the types of sloped terrain where drifting …

Evaluation Of Novel Biomarkers As Predictive Measures Of Mastitis – Establishing A Relationship With Health Status, Lamb Performance, And Determination Of Prevalence Of Mastitis In Ewes Under Intensive Management, Courtney Berghoff

All Graduate Theses and Dissertations, Fall 2023 to Present

Inflammation of the mammary gland, also known as mastitis, is a prevalent and financially impactful disease in sheep production. The objectives of this survey were to 1) evaluate current testing methods: somatic cell count (SCC), California Mastitis Test (CMT), and bacterial culture, as well as novel biomarkers: lamb performance, milk composition, and udder conformation, for their impact on ewes categorized as clinically healthy or unhealthy under intensive management systems at 15 days in milk (DIM) and 30 DIM, and 2) identify biological markers that are correlated with clinical and subclinical mastitis. Milk, blood, and fecal samples, a visual and physical …

Watermelon Production In Utah: Exploring Biostimulants To Reduce Water And Fertilizer Use, Evan A. Christensen

All Graduate Theses and Dissertations, Fall 2023 to Present

The impacts of climate change and drought threaten water supplies that are important for watermelon production. Additionally, rising fertilizer costs and off-site effects from improper fertilizer applications cause concerns for the sustainability of watermelon production. Biostimulant products have shown promise in helping plants maintain production under reduced irrigation conditions and may offset fertilizer addition. Biostimulants are any microorganism or substance that is applied to a plant with the goal to increase nutrition efficiency, crop quality traits, or tolerance to environmental stresses. Most of the production in the U.S. uses seedless watermelon which are typically grown in greenhouses and transplanted due …

Supplementing Tannins To Increase Performance And Reduce Methane Emissions In Cows Grazing On Western Grasslands, Horacio Pedro Blanchard

All Graduate Theses and Dissertations, Fall 2023 to Present

Cattle grazing on U.S. rangelands often rely on a limited diet made up mostly of grasses. As the seasons change from spring to fall, the nutritional quality of these grasses declines, leading to less efficient digestion and higher production of methane—a potent greenhouse gas. In addition, most grass-based pastures lack beneficial plant compounds, such as tannins.

This study explored whether adding natural tannins—specifically, condensed and hydrolyzable tannins from quebracho and chestnut trees—to the diet of grazing cattle could improve how the use efficiency of nutrients and reducing methane emissions from cattle. Over two years, 24 cow-calf pairs grazed in small …

Modeling For Functional Traits In Bluebunch Wheatgrass Using Unmanned Aerial Vehicle (Uav) High-Throughput Phenotyping, Brittany L. Johnson

All Graduate Theses and Dissertations, Fall 2023 to Present

Changing climates and shifts in community composition in the Intermountain West threaten sagebrush-steppe ecosystems, impacting both plants and animals. Restoring native grasses like bluebunch wheatgrass (Pseudoroegneria spicata; BBWG) can help ecosystems resist invasive species and recover from stress and disturbances. As a native cool-season grass, BBWG is widely used in rangeland restoration for the western U.S. Breeding programs for restoration plant materials, such as seeds for ecological projects, often require years or decades of field testing while facing staffing constraints. High- throughput phenotyping (HTP), which rapidly measures observable plant traits, offers a faster solution using drones to capture time-series …

Genes That Matter: Survival Modeling In Tcga-Brca With Treatment Interactions., David Pratt

Electronic Theses and Dissertations

High-dimensional genomic data offer both promise and challenges for identifying clinically relevant biomarkers. This study developed a parallelized survival modeling pipeline to identify genes associated with overall survival in breast cancer, with a focus on gene-by-treatment interactions and patient heterogeneity. RNA-Seq data from female patients in the TCGA-BRCA cohort were analyzed. Univariate Cox proportional hazards models were used to screen genes, adjusting for age, race/ethnicity, treatment status, and cancer stage. A LASSO-penalized Cox regression was fit across 2000 random seeds to assess feature stability. Genes were filtered by expression level, statistical significance, and hazard ratios (effect sizes) in either direction, …

The Social Dimensions Of Aquaculture: Food Sovereignty And Indigenous Rights In Ketchikan, Alaska, Morgan J. Davis

Capstone Collection

This research project asks how the growing commercial aquaculture industry in Ketchikan, Alaska, functions to alleviate or exacerbate local food insecurity; reinforce or undermine food sovereignty among Indigenous communities, and enhance or restrict community participation in the control of marine resources. Global initiatives have responded to food insecurity through agricultural inputs and technology to create higher yields; however, conventional agricultural production has contributed to and is increasingly vulnerable to climate change. To address higher demands for food, government agencies and development experts have looked towards Blue Growth and aquaculture as a solution for food insecurity and environmental concerns. While aquaculture …

Owl Integrations Soil Monitor, Derek Chau, Armaan Kahlon

Electrical Engineering

This paper examines the design process and results concerning the OWL Integrations soil monitor. Disaster relief relies heavily on digital communications, especially in environments where conventional methods (e.g. Wi-Fi, cellular, fiber optics) are unusable. To help emergency services assess disaster-stricken areas, a soil monitoring system was developed using LilyGo T-Beams (ESP32), programmed with specialized firmware known as the ClusterDuck Protocol to collect data pertaining to moisture and temperature. The project is sponsored by OWL Integrations, with help from the Cal Poly Electrical Engineering (EE) Department. Results show positive prospects, with the product able to make 4 km transmissions, operate for …

Evaluating The Effectiveness Of Individual Cleaning Steps Of A Cip Protocol In Membrane Biofilm Removal Under Dynamic Conditions, Diwaker Singh, Sanjeev Anand

Dairy Science and Food Science Faculty Publications: 2022 to Present

This study evaluated the effectiveness of individual clean-in-place (CIP) steps in removing biofilms from reverse osmosis (RO) membranes under dynamic flow conditions using the Centers for Disease Control (CDC) biofilm reactor. Biofilms were developed in the laboratory under continuous flow, using mixed-species bacterial isolates obtained from 10-month-old RO membrane biofilms from a commercial facility. Individual CIP chemicals, representative of those used in commercial protocols, were tested against 24 h-old biofilms. Additionally, a complete six-step sequential CIP process was conducted under dynamic conditions, consisting of treatments with alkali, surfactant, acid, enzyme, a secondary surfactant, and sanitizer. All experiments were performed in …

Comparative Impacts Of Irradiation On Antioxidant Compounds Of Scalded And Non-Scalded Skin Of Granny Smith Apples, Angela Banda

Food Science (MS) Theses

Post-harvest Superficial scald affects the quality of Granny Smith Apples. Oxidative stress develops superficial scald with antioxidant systems mitigating the extent of this damage. This study evaluated the effects of gamma, X-ray, and electron beam irradiation on antioxidants – ascorbic acid, total phenolics, α-tocopherol, carotenoids, chlorophyll, and campesterol – in scalded and non-scalded apple peel tissue. Apples were treated with 0.2-0.77 kGy and stored at 0-1 °C. Irradiation at the applied doses increased scald incidence, suggesting that disruption of antioxidant systems promoted reactive oxygen species accumulation and membrane damage. While certain antioxidants appeared to be upregulated as a stress response, …

Formosan Subterranean Termites Coptotermes Formosanus Shiraki (Blattodea: Heterotermitidae): An Underreported Threat To Commercial Shrimp Boats In The Midsouth, Usa, J. S. Portugal Iii

Midsouth Entomologist

No abstract provided.

Ground Truthing Of Inaturalist Submissions Confirms The Presence Of Asian Needle Ants, Brachyponera Chinensis (Emery) (Hymenoptera: Formicidae), In Louisiana, A New State Record, Aaron R. Ashbrook, Victoria Bayless, Stephen Baca, Gerardo Guevara-Milla, Chris E. Carlton

Midsouth Entomologist

Based on submissions to iNaturalist from citizen scientists, the presence of the Asian needle ant (Brachyponera chinensis), was confirmed for Louisiana in East Baton Rouge Parish. Use of citizen scientist platforms for sources of invertebrate taxa distributions is a powerful tool but requires caution because the records are typically not validated by physical voucher specimens that have been deposited in publicly accessible museums, and identification of many species is not possible by images alone. To demonstrate the usefulness of citizen scientist programs like iNaturalist, possible collection sites for Asian needle ant specimens were located. Specimens were collected, identified, and vouchers …

How Do Acoustic Indices Serve As Proxy Of Temperate Forests And In Relation To Presence Of Bobcat (Lynx Rufus) In Central Indiana Habitats, Faith Mcphee, Kristen Bellisario Dr.

Discovery Undergraduate Interdisciplinary Research Internship

Central Indiana is largely dominated by agriculture which has led to numerous historical extirpations of mammals. The bobcat (Lynx rufus) is slowly re-establishing across northern Indiana after near extirpation in the early 1900s and utilizes corridors similar to extirpated mammals. Bobcats as a focal species can serve as an indicator for habitat quality for future designated wildlife corridors. New metrics have emerged from species monitoring through remote sensing technologies such as eco-acoustic indices which summarize sound profiles, are a potential proxy for biodiversity, and could be utilized in monitoring large mammals. Here, we investigate the relationship between Lynx …

The Molecular And Behavioral Characterization Of The Murine Cre – Loxp Skeletal Muscle Synthesized Bdnf Knockout Model, Asha E. Rustad

All NMU Master's Theses

Brain derived neurotrophic factor (BDNF) is a neurotrophin essential for supporting the growth, differentiation, and health of neurons within the central and peripheral nervous systems. BDNF is also a member of the myokine family, where muscle synthesized-BDNF (msBDNF) is thought to facilitate the crucial bi-directional communication between the motor neuron and the muscle fibers it innervates. Since 2008, the Ottem Laboratory has investigated the role of msBDNF by employing Cre/LoxP recombinase technology to selectively delete the BDNF coding region within skeletal muscle of mice. This approach generates animals with either heterozygous or homozygous deletions of msBDNF, as well as BDNF …

Field Pea: Crop Management And Production, Department Of Primary Industries And Regional Development, Western Australia

Grains and other field crops factsheets

The field pea agronomic package available to growers is one offering simplicity and reliability. Producing high yielding field pea crops is now limited more by seasonality and rainfall rather than technology and genetics. With new varieties and agronomy package field pea is a profitable break crop option.

Investigating The E74-Mediated Regulation Of A Gata Factor In Aedes Aegypti Mosquitoes, Jacklyn Marie Estrada

Open Access Theses & Dissertations

The mosquito species Aedes aegypti has a significant impact on public health as a vector for multiple pathogens. Its ability to transmit deadly diseases, including Yellow Fever, Dengue Fever, and Zika, emphasizes the urgency of understanding its reproductive biology. In female mosquitoes, reproductive success hinges on obtaining a vertebrate blood meal, which triggers vitellogenesis - the synthesis of yolk protein precursors (YPPs) necessary for egg development. Without a blood meal, female Ae. aegypti remain in a state of previtellogenic arrest, where the YPP gene vitellogenin (Vg) is repressed by a type of transcriptional factor, GATAr (AaGATAr) (Attardo et al., 2003). …

Spatial And Thermal Aspects Of The Ecology Of Three Sympatric Rattlesnakes In The Montane Northern Chihuahuan Desert, Joshua James Mead

Open Access Theses & Dissertations

To understand how animals coexist on the landscape, the individual aspects of a species life history must first be understood. Animals need to find locations that provide the resources they need to survive. Movement, microhabitats, and temperature can alter such areas where animals occur. Understanding animal movements provide important information on space use and microhabitats on the landscape. Ectothermic animals must acquiesce to ambient temperatures or use behavioral modifications to alter their body temperature. The ability to maintain suitable body temperature is essential for physiological function, reproduction, and ability to avoid predation. Research on the variation in a species ecology …

Expression Of Glycine Transporter 1 In The Rodent Basal Ganglia: Glial Vs. Neuronal, Rosa Atziri Perez

Open Access Theses & Dissertations

Glycine functions as an inhibitory neurotransmitter in the central nervous system (CNS),and it is mainly involved in autonomic functions. The levels of extracellular glycine are regulated by two membrane transporters, glycine transporter 1 and glycine transporter 2 (GlyT1 and GlyT2, respectively). These transporters differ in function and localization within the CNS. For many years, studies suggested that only GlyT2 served as a neuronal marker; however, GlyT1 has been localized in neurons in recent studies. The expression of GlyT1 is widespread compared to GlyT2; hence, the main objective is to determine the nature of the expression of GlyT1 in areas devoid …

Systematics Of African River Frogs (Anura: Pyxicephalidae: Amietia) In Central Africa, With The Description Of Two New Species, Jesus Manuel Reyes

Open Access Theses & Dissertations

Amietia is a pyxicephalid anuran genus that is prevalent throughout central, southern, and eastern portions of sub-Saharan Africa. Recent phylogenetic studies have been in conflict regarding the validity and composition of several Amietia species in the Albertine Rift region. The goals of this study are to: (1) generate an updated molecular phylogeny for Central African Amietia with new sampling; (2) clarify the relationship between the previously unsampled taxa A. amieti and A. chapini; (3) clarify the status of A. desaegeri; and (4) confirm the taxonomic status of potentially new species. Maximum likelihood and Bayesian inference methods were used to generate …

Phylogenetics And Integrative Taxonomy Of The Lang's Reed Frog Species Complex (Anura: Hyperoliidae: Hyperolius Langi), Dominic Troiani

Open Access Theses & Dissertations

The genus Hyperolius (Rapp, 1842) is the most speciose amphibian genus in sub-Saharan Africa. The genus has a complex taxonomic history because of its extensive intraspecific and interspecific morphological variation, large geographic distribution of many taxa, gaps in sampling, and the discovery of significant cryptic diversity within many species. The goal of this study is to understand the relationships and taxonomy of Hyperolius langi via an integrative taxonomic approach that combines molecular, morphological, and bioacoustics data to clarify the systematics of the geographically widespread species Hyperolius langi. Two mitochondrial (16S and cyt b) and one nuclear (RAG1) gene were used …