Digital Commons Network^™

Frequent Pattern Mining With Optimized Gated Recurrent Units For Automated Waste Classification Systems In Smart Cities, Anupriya Garg, Ratish Kumar

Mansoura Engineering Journal

Efficient waste segregation into biodegradable and non-biodegradable categories is a crucial requirement for sustainable smart city development. While Convolutional Neural Network (CNN)-based approaches have demonstrated promising performance, their high architectural complexity and limited adaptability often restrict real-time deployment. This paper proposes BnBCNet, a lightweight waste classification framework that reformulates image-based waste segregation as a sequential learning problem using Gated Recurrent Units (GRUs). To further enhance classification performance, Grey Wolf Optimization (GWO) is employed for hyperparameter optimization, while Adam optimizer is used for network weight updates. Experiments conducted on a publicly available waste segregation image dataset demonstrate that the proposed BnBCNet …

Site Use And Demographic Changes In A Northwest Atlantic Sea Turtle Foraging Ground, Ryan C. Welsh

Graduate Studies Theses and Dissertations 2026

and site fidelity, making mortality difficult to distinguish from redistribution. We developed a behaviorally explicit framework to separate true mortality from changes in availability caused by movement and redistribution. We evaluated this problem for juvenile green turtles (Chelonia mydas) and loggerhead turtles (Caretta caretta) captured at the St. Lucie Nuclear Power Plant intake canal on Florida’s Atlantic coast using a multi-decade capture–mark–recapture record spanning 1977 - 2023. Hidden Markov Models classified individuals into latent habitat-use strategies (Nomadic, Resident, and Transient) based on capture timing and body size. Across both species, these strategies captured consistent differences in site fidelity and recapture …

The Role Of Agricultural Biomass In Supply Chain Decarbonization, Ruxia Lyu, Sobhan Arisian, Zhitang Li, Mohammad S. Taskhiri, Reza Kiani Mavi

Research outputs 2022 to 2026

To achieve supply chain decarbonization, environmentally conscious manufacturers are transforming their energy infrastructure. While certain manufacturers are adopting a pure bioenergy strategy in their production processes, others are opting for a hybrid energy approach that combines traditional energy with bioenergy. This choice is often influenced by limitations in land capacity and the developmental stage of biomass conversion technologies. This paper introduces a game-theoretic model that explores the optimal approach to achieving supply chain decarbonization by strategically selecting energy portfolios. Our findings reveal that in scenarios where the market size is small, manufacturers tend to adopt a hybrid energy strategy, particularly …

Estrogen Deprivation During Primate (Papio Anubis) Pregnancy: Impact On Systemic Microvascular Flow And Cardiovascular Development And Function After Birth In Offspring, Sifa Turan, Jeffery S. Babischkin, Graham W. Aberdeen, Gerald J. Pepe, Eugene D. Albrecht

Department of Biomedical and Translational Sciences Faculty Publications

Background

Suppressing estradiol (E₂) during baboon pregnancy lowers offspring skeletal muscle capillary density, vital for insulin-mediated glucose uptake, and induces insulin resistance. We examined whether E₂ deprivation also impairs microvascular flow and cardiac function.

Methods

Offspring of untreated baboons, letrozole-treated baboons, or letrozole plus E₂ (maternal s.c. injections during the second half of gestation) underwent contrast-enhanced microbubble ultrasonography to quantify microvessel flow and echocardiography to assess cardiac performance.

Results

Letrozole reduced maternal serum E₂ by 95% (p <  0.01). In letrozole offspring, microbubble flux rate (β) fell 55% (p <  0.02), replenishment was 5 s slower (p <  0.03), and microvessel flow declined 40% (p = 0.05); all were restored by added E₂. Indices of systolic (isovolumic contraction), diastolic (isovolumic relaxation), global performance (Tei index), and cardiac output were unchanged.

Conclusion

Prolonged gestational E₂ deprivation programs a reduction in microvascular flow without altering cardiac function; maternal E₂ prevents this, supporting E₂'s role in …

Brief Pulses Of High-Level Fluid Shear Stress Enhance Metastatic Potential And Rapidly Alter The Metabolism Of Cancer Cells, Amanda N. Pope, Devon L. Moose, Guy O. Hudson, Hank R. Weresh, Marion R. Dykstra, Aabha Y. Joshi, Patrick Breheny, Eric B. Taylor, Michael D. Henry

Department of Biomedical and Translational Sciences Faculty Publications

Circulating tumor cells (CTCs) face challenges to their survival, including mechanical and oxidative stresses that are different from cancer cells in solid primary and metastatic tumors. The impact of adaptations to the fluid microenvironment of the circulation on the outcome of the metastatic cascade is not well understood. Here, we find that cancer cells exposed to brief pulses of high-level fluid shear stress (FSS) exhibit enhanced invasiveness and anchorage-independent proliferation in vitro and enhanced metastatic colonization/tumor formation in vivo. Cancer cells exposed to FSS rapidly alter their metabolism in a manner that promotes survival by providing energy for cytoskeletal remodeling …

Comparative Mass Spectrometry Analysis Of High And Low Centrifugation Extracellular Vesicle (Ev) Pellets From Healthy Urine Following Tamm-Horsfall Protein Removal, Dana Bielopolski, Luca Musante, Henrik Molina, Douglas Barrows, Samantha Upson, Lifang Yang, Thomas Carrol, Jonathan N. Tobin, Rhonda G. Kost, U. Erdbrügger

Department of Biomedical and Translational Sciences Faculty Publications

Objectives

Urinary extracellular vesicles (uEVs) are potential biomarkers for renal physiology and disease. Their isolation is challenged by Tamm-Horsfall protein (THP) contamination, particularly in high-speed ultracentrifugation (P100) fractions. Low-speed (P20) fractions contain biologically relevant uEVs, yet their proteomic composition is underexplored. This study evaluates strategies for THP removal to optimize mass spectrometry analysis and characterizes P20 and P100 uEV proteomes and its combination in healthy urine.

Methods

Urine from a healthy volunteer was processed via sequential centrifugation at 21,200 g (P20) and 164,244 g (P100). THP removal was performed using low ionic strength buffer (P20) and size-exclusion chromatography (P100). Western …

Activity-Dependent Remodeling Of Muscle Architecture During Distinct Locomotor Behaviors In Caenorhabditis Elegans, Adina Fazyl, Akash Anbu, Sabrina Kollbaum, Andres G. Vidal-Gadea

Faculty Publications – Biological Sciences

Muscle structure is dynamically shaped by mechanical use, yet how distinct locomotor behaviors influence sarcomere organization remains poorly understood. In Caenorhabditis elegans, crawling and swimming constitute discrete gaits that differ in curvature, frequency, and mechanical load, providing a tractable model for studying activity-dependent remodeling. Using confocal imaging of phalloidin-stained body-wall myocytes, we quantified myocyte geometry, sarcomere length, and sarcomere number across anterior, mid-body, and posterior regions in animals reared exclusively under crawling or swimming conditions. Quantification and hypothesis testing used linear mixed models that accounted for repeated myocyte measurements within animals, with interaction terms testing region-specific effects of locomotor …

To Flea Or Not To Flea: Abiotic And Biotic Factors Driving Flea Parasitism On Wild Deer Mice, Parker Todd, Angela Luis, Mike Kinsella

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Deer mice (Peromyscus maniculatus) are an abundant North American rodent and the primary reservoir for Sin Nombre virus (SNV), a hantavirus with a 30-40% case fatality rate in humans. While ectoparasites, such as fleas, are not considered vectors of SNV, their bites may indirectly affect the transmission of SNV by impacting host condition or immune function. These impacts could potentially lead to an increase in host susceptibility and/or an increase in viral shedding, yet there is still little knowledge on what influences flea parasitism on deer mice in western Montana. This study looks to examine how mouse sex, …

The Sub-Lethal Effects Of Trematode Parasites On The Migratory Behavior Of Lesser Scaup (Aythya Affinis), Scott Alan Herman

Graduate Research Theses & Dissertations

The introduction of the invasive freshwater faucet snail (Bithynia tentaculata) and its associated parasites in the Upper Mississippi River and Great Lakes Region provides the opportunity to investigate how anthropogenic stressors impact the life history of lesser scaup (Aythya affinis) using the Mississippi Flyway. To understand the life histories and interactions between lesser scaup and faucet snails we examined historical records, research, and ecology textbooks. Our literature review identified critical knowledge gaps in lesser scaup literature surrounding population dynamics, reproduction, and migration. Specifically, the sub-lethal effects of invasive trematodes on the migratory behavior of lesser scaup in the Upper Mississippi …

New Hampshire Shellfish Under Pressure: Physiological Effects Of Climate Change And Toxic Algal Blooms, Olivia Boyan

UNH URC Open (2026 and after)

Climate change driven effects on the ocean, including warming water, acidification, and changes in the presence of harmful algal blooms (HABs) are causing metabolic pressures on marine organisms, particularly in the Gulf of Maine. Shellfish are susceptible to these pressures because their metabolic processes including growth and respiration are influenced by water temperature, pH, and consumption of algal toxins. This study investigates the effects of ocean warming, acidification, and diet toxicity level on the growth and respiration of Blue mussels (Mytilus edulis), Eastern oysters (Crassostrea virginica), and Sea scallops (Placopecten magellanicus). Selected individuals were subjected to water treatments simulating ambient …

Presence Of Road Salts In Vernal Pools And Effects On Amphibian Development, Grace I. Bemis, Ella Mack

UNH URC Open (2026 and after)

Presence of Road Salts in Vernal Pools and Effects on Amphibian Development

Parasite Party: Investigating Ecological Drivers Of Trematode Parasite Prevalence Across The Isles Of Shoals, Aimee D. Bousquet, April Blakeslee, Amy Fowler, David Buck

UNH URC Open (2026 and after)

Parasite Party: Investigating Ecological Drivers of Trematode Parasite Prevalence Across the Isles of Shoals

Insight Into School-Based Tobacco Prevention Education In Arkansas School Districts, Faisal Khan

2026 Research Poster Competition

Insight into School-Based Tobacco Prevention Education in Arkansas School Districts [PD1] Henry Obajaja, Ashley Clawson, Kara Lasater, Victor Kwaku Akakpo, Kolade Olatunde, Luke Larsen, Faisal Khan, Page D Dobbs Characters: 2,500/2,500Select Category: Public Health Study Type: Cross-sectionalPresentation Type – Paper or Poster Funding – select University (College of Education and Health Professions WE CARE Initiative) Significance. Despite national declines in youth tobacco use, Arkansas, a Tobacco Nation state, continues to report disproportionately high rates of tobacco use among adolescents. Prior research found Arkansas school professionals identified student tobacco use as a top health concern; however, it is unclear what tobacco …

Climate Change Effects On Biomass And Greenhouse Gas Emissions Are Ameliorated By Nontoxic Endophytes In Southeastern Usa Transition Zone Tall Fescue Pastures, Rebecca Kay Mcgrail, Jonathan D. Moore, A. Elizabeth Carlisle, Jim A. Nelson, Rebecca L. Mcculley

Plant and Soil Sciences Faculty Publications

Background: The plant–microbe interaction between tall fescue and its endophyte Epichloë coenophiala can affect ecosystem responses to changing rainfall patterns and increasing temperatures. Endophyte-infected (E+) stands often exhibit improved stress tolerance and differing soil greenhouse gas (GHG) emissions compared to endophyte-free (E−) stands. However, it is unknown if mammalian nontoxic endophyte (NTE) strains introduced into some tall fescue cultivars confer differing stress tolerances or reduce soil GHG emissions.

Methods: We quantified the impact of fescue-NTE symbioses in Jesup and Texoma on biomass and GHG emissions in response to increased temperature (+3°C) and altered precipitation (50% lengthened interval between events) using …

A Global Synthesis Of Fragipan Silicon Concentrations And Relationships With Soil Physicochemical Properties As A Function Of Soil Parent Materials, Christopher Shepard

Plant and Soil Sciences Faculty Publications

Fragipans are dense, brittle subsurface horizons that restrict root growth and limit water-holding capacity. A common factor in these soils is a binding agent, potentially either phyllosilicate clay bridging, amorphous aluminosilicate/silica, or silica sorbed to Fe oxides. Others have suggested that no binding agent is present within these soil horizons and that the arrangement of individual particles is solely responsible for these horizons. In this article, a secondary data synthesis was utilized to demonstrate that silicon (Si) accumulation is a key pedogenic process in loess-derived fragipan horizons, but not in all fragipans. The average dithionite-extractable Si (Si_d) content …

Dosage Sensitivity And The Evolution Of Dosage Compensation: Tests Of The Insensitive Sex Chromosome Hypothesis In Flour Beetles, Shana Pau

Biology Dissertations

Sex chromosome evolution generates imbalances in gene dosage that can disrupt gene expression and organismal function. These imbalances are often resolved through dosage compensation mechanisms, yet the factors that drive the emergence and diversity of these systems remain poorly understood. This dissertation addresses a central question in evolutionary genomics: what governs the evolution of dosage compensation?

Focusing on dosage sensitivity as a potential driver, I evaluate the Insensitive Sex Chromosome Hypothesis (ISCH), which predicts that chromosome-wide compensation is more likely to evolve in genomic contexts that are not depleted of dosage-sensitive genes. Using flour beetles (Tribolium spp.) as a …

Coordinating The Layers: Regulation Of Peptidoglycan Synthesis And Cell Wall Assembly In Mycobacterium Smegmatis By Murj And Pgfa, Karen Emmanuella Samaga-De-Tembiwa

Biology Dissertations

The mycobacterial cell envelope consists of three covalently linked layers whose synthesis must be coordinated to maintain structural integrity during polar growth. While the biosynthetic enzymes for each layer are well characterized, the molecular mechanisms that coordinate synthesis across layers have remained poorly understood. This thesis investigates two essential transmembrane proteins, PgfA and MurJ, that regulate peptidoglycan metabolism in Mycobacterium smegmatis and provide new insight into how mycobacteria synchronize cell wall assembly.

We present evidence that PgfA functions as a bifunctional regulator that links peptidoglycan metabolism to the availability of trehalose monomycolate (TMM), a key mycolic acid precursor. Through epistasis …

Validity And Reliability Of The Wut Hydration System When Assessed In The Afternoon, Peyton Hines

2026 Research Poster Competition

The WUT (weight, urine color, and thirst) Venn diagram is recommended for individuals to self-assess their hydration status. However, current research is limited to comparisons between morning first-void markers and 24-hour markers. PURPOSE: To examine the validity and reliability of afternoon WUT scores in comparison to 24-hour hydration status. METHODS: Fifty participants (25 ± 8y, 72.2 ± 14.9kg) voluntarily participated in this study. Participants collected afternoon spot urine between 2:00 and 4:00 pm and 24-hour urine samples on three out of seven consecutive days. Body mass (BM), urine color (Ucol), urine osmolality (Uosm), urine specific gravity (USG), and thirst perception …

Exploring Experiences Of Contraceptive Counseling & Coercion Among Various Races And Age Groups Of Women Of Reproductive Age., Haylie Horn

2026 Research Poster Competition

Making an informed decision about contraception based on patient-centered contraceptive counseling is a fundamental reproductive right for women. This counseling approach serves as a key indicator of high-quality health care that focuses on and prioritizes patients’ individual needs and preferences regarding contraceptive methods. However, recent studies indicate a growing emphasis on promoting specific contraceptive options – particularly long-acting contraception (LARCs) – without adequately considering patients’ preferences and needs, which has led to growing concerns over contraceptive coercion. Despite concerns, no studies have yet explored the association between certain demographic factors like race, education level, age, socioeconomic status, etc. This study …

Adolescent Development Of Pubertal Hormones, Reward Neurocircuitry, And Externalizing Behaviors And Internalizing Behaviors, Amber Jared

2026 Research Poster Competition

Title: Adolescent development of pubertal hormones, reward neurocircuitry, and externalizing behaviors and internalizing behaviors Authors: Amber Jared & Josiah K. Leong  Background: Adolescence is a period of rapid biological and brain development during which changes in pubertal hormones and neural reward systems may increase vulnerability to emotional and behavioral difficulties. Although prior research has documented widespread brain maturation during adolescence, less is known about how specific subcortical reward pathways develop and how these changes relate to hormones and behavior.  Methods:         Using longitudinal data from the Adolescent Brain Cognitive Development (ABCD) study, this project examines developmental changes in two key brain …

Monitoring Long-Term Water Quality Benefits Of Urban Stream Restoration, Kira Burnett

2026 Research Poster Competition

Urbanization without conscious environmental planning can result in the degradation of stream ecosystems. This tends to result in urban stream syndrome, which is often characterized by increased sediment and nutrient concentrations, decreased biodiversity, more frequent flash flooding, and overall water quality degradation. As such, stream restoration practices are often implemented to address urban stream syndrome. Commonly used restoration practices include applying natural channel design to stabilize eroding stream banks and establishing diverse streamside vegetation to filter pollutant inputs. However, the benefits of restoration are not often quantified due to a lack of post-restoration monitoring, making it challenging to determine what …

Responses To Influencer’S Vlog On Instagram: Nicotine Pouches And Oral Health, Amrusha Ranjith

2026 Research Poster Competition

Despite claims by ZYN, the leading nicotine pouch brand, that it does not partner with social media influencers, influencers with large followings continue to post content depicting nicotine pouch use. Prior research suggests oral lesions are among the most commonly reported adverse events associated with nicotine pouch use; however, public discussions of these outcomes on social media remain understudied. This study examined public discourse surrounding nicotine pouch use and oral health in response to an Instagram post by a popular influencer. Methods: We collected 1,668 publicly available comments from an Instagram post by Emma Chamberlain (@emmachamberlain) using a social media …

Developing Bioassays For Detection Of Residual Herbicides In Compost, Esther Moore

2026 Research Poster Competition

Developing Bioassays for Detection of Residual Herbicides in Compost, the use of synthetic herbicides has dominated the field of agricultural production for over a century. While synthetic herbicide use has resulted in an undeniable boost in agricultural productivity, risks such as environmental degradation and reduced yield of non-target plant species must be considered. Key among these risks is compost contamination, especially from persistent herbicides. After these herbicides are applied, they are absorbed by growing vegetation, consumed by herbivores, passed through the digestive tract, and reintroduced into soil manure based compost. Even after this process, chemicals in such herbicides can remain …

Disrupted Circadian Rhythms Affect Hallmark Pathologies In Alzheimer’S Disease-Related Mouse Models, Valeria Buzinova

Theses and Dissertations--Molecular and Cellular Biochemistry

Alzheimer’s Disease (AD) is a complex neurodegenerative disease with two hallmark pathologies: extracellular amyloid-b (Ab) and intracellular neurofibrillary tangles (NFTs). Ab is proteolytically processed from amyloid precursor protein (APP) by b-secretase and g-secretase as a monomeric peptide prone to aggregation. Eventually, the aggregate-prone monomers will form dense plaques that are difficult to break down and remove. These plaques begin to deposit into the cortex decades prior to the formation of NFTs and the onset of cognitive decline. NFTs are comprised of hyper-phosphorylated tau. Tau is a protein that serves to promote and stabilize the formation of microtubules. The formation of …

Characterizing The Human Metapneumovirus Matrix Protein And Its Role In Infection, Chase J. Heim

Theses and Dissertations--Molecular and Cellular Biochemistry

Human metapneumovirus (HMPV) causes severe respiratory tract infections in all cohorts, but especially in vulnerable groups such as children, older adults, and the immunocompromised. The matrix (M) protein of HMPV, like the M proteins of other members of the Mononegavirales order, is involved in virus assembly and budding. However, other functions of the HMPV M protein have yet to be elucidated. To investigate these various functions of the M protein, we used a peptide-conjugated phosphorodiamidate morpholino oligomer (PPMO) antisense agent designed to block translation of the M gene to reduce M expression during infection. Treatment with varying concentrations of an …

Social Isolation Predicts Altered Reward Circuit Connectivity And Future Behaviors In Adolescents, Mason Lucas

2026 Research Poster Competition

Adolescence is a period of transition from childhood to adulthood when people explore risky behaviors. Stressors during adolescence can change structural brain connectivity. Previous research has found weaker structural connectivity between reward circuits and future cognitive impairments among children raised in orphanages. Comparative research in mice suggests that social isolation after bullying can damage these connections and induce alcohol seeking. We tested whether social isolation was related to lower connectivity of targeted structural connections in adolescent humans. We analyzed data from the Adolescent Brain Cognitive Development study and found 130 subjects had experienced extreme social isolation. To evaluate the level …

From Chaos To Clockwork: Investigating The Role Of Circadian Genes In Metabolic Development Of 2nd And 3rd Instar Drosophila Larvae, Elliott Ruegsegger

2026 Research Poster Competition

Connecting deficits in circadian rhythm machinery to the severity of other health conditions is a common task that chronobiology, the study of physiological rhythms, undertakes. Disruptions to circadian rhythms and sleep are linked to increased risk of developing multiple different diseases, including Alzheimer’s Disease and obesity. Circadian rhythms are expressed at the molecular level through rhythmic variations in the concentration of specific proteins. While the central clock genes that produce these proteins, such as period and timeless, are evolutionarily conserved across the animal kingdom, not much is known about the consequences of disruptions in circadian rhythm machinery during early development, …

Moving Towards Defining The Evolutionarily Ancient Role Of Notch Signaling In Animals., Paige Norris

2026 Research Poster Competition

The notch signaling pathway is deeply conserved across animals from humans to sponges. It functions through direct cell-to-cell communication, where ligand binding triggers the cleavage of the Notch receptor’s intracellular domain (NICD), which then translocates to the nucleus to regulate transcription. In bilaterian lineages—animals with bilateral symmetry— Notch signaling is known to regulate binary cell fate decisions in diverse contexts ranging from neurogenesis to cancer. However, the functions of Notch signaling in early-branching animals, including cnidarians (e.g. jellyfish, corals and sea anemones), are still not fully understood; consequently, evolutionarily ancient roles of Notch remain ill-defined. To address this fundamental knowledge …

Methanogens On Asteroids?, Isabella Reimer

2026 Research Poster Competition

Methanogens on Asteroids? Introduction: It is conceivable that if methanogens, microorganisms in the domain Archaea, exist on Mars, they were seeded there from a piece of Earth that was ejected by a meteor impact sometime in the past, or that material from Mars seeded our home planet by the same mechanism. The hypothesis of panspermia, the idea that life could be transported from one planet to another through space, was first developed by Arrhenius in 1908 (1). Since then, the idea of lithopanspermia, the transfer of organisms in rocks such as meteors and asteroids, has become amenable to testing. Previous …

Investigating Pituitary Specific Transcription Factor-1 (Pit-1) In Neuronal Development In The Sea Anemone Cnidarian Nematostella Vectensis, Emily Ye

2026 Research Poster Competition

In bilaterians — animals with bilateral symmetry, like vertebrates and insects — the pituitary specific transcription factor-1 (pit-1) is essential for regulating growth hormone and prolactin expression in the pituitary gland. However, in non-bilaterians, the ancestral function of pit-1 remains unknown. Cnidarians, such as the sea anemone Nematostella vectensis, form a sister group to bilaterians and lack a pituitary gland, making them a powerful model for investigating the early evolutionary role of conserved developmental genes, like pit-1.Using CRISPR-mediated gene editing, pit-1 knockout mutants — anemones without the pit-1 gene — were generated, and their transcriptomic, cellular, and behavioral phenotypes were …