Digital Commons Network^™

First High-Quality Genome Assembly Of Umbelopsis Nana Isolated From Forest Soil, Ryuka Iizuka, Tomohiro Suzuki, Nozomu Watanabe, Javier F. Tabima, David Hibbett, Yoko Katayama, Makoto Yoshida

Biology

Species of the genus Umbelopsis are ubiquitous soil saprotrophic fungi known for their role in ecological nutrient cycling and biotechnological potential in lipid production. Here, we present the genome assembly of Umbelopsis sp. strain THIF13, which is characterized by its capability to produce carbonyl sulfide. Using PacBio Sequel long-read data, a high-quality genome assembly was generated comprising 18 contigs totaling 27.2 Mb, which is larger than other Umbelopsis genomes, with an N50 of 1.77 Mb. Notably, 16 contigs were flanked by telomeric repeats at both ends. The assembly showed high completeness, with 98.1% complete Benchmarking Universal Single-Copy Orthologs and 11.15% …

Alabama Prairie Reconstruction: Comparing Management Pathways For A Southeastern Landscape, Cecelia R. Geyer

Theses

Southeastern prairies are highly biodiverse yet increasingly threatened by land-use change, fire suppression, and habitat fragmentation. These disturbance-dependent systems rely on periodic fire and grazing to maintain plant diversity and ecosystem function. This study evaluates prairie restoration strategies by testing predictions from the Intermediate Disturbance Hypothesis and the Patch Mosaic Burn Hypothesis. The study site was divided into three treatments: prescribed burned only (B), prescribed burned with mowing (BM) to simulate grazing, and an undisturbed control (C). A standardized mix of native plant seeds was broadcast across all treatments. Ecosystem health and function were evaluated using plant community diversity and …

Perceived Barriers To Integrated Crop–Livestock Systems: Evidence From A Nebraska Producer Survey, Omid Tarashtwal

Department of Agricultural Economics: Dissertations, Theses, and Student Research

Integrated crop-livestock systems offer agronomic, economic, and environmental benefits, yet reintegration has been slow across the Northern Great Plains despite sustained interest. Existing research has documented barriers to transition conceptually, but quantitative evidence on which barriers producers perceive as most important and which producer and operation characteristics are associated with stronger barrier perceptions remains limited. This thesis addresses that gap using data from the 2023 Nebraska Agriculture Operator Survey.

The analysis focuses on 241 Nebraska producers, including 179 crop-only and 62 livestock-only operations. Seven models are estimated, combining ordered logit estimation for single-item barriers with linear regression for averaged barrier …

Mixed Methods Evaluation Of A Shipped Medically Tailored Meal Pilot Intervention, Shelly Palmer, Laura E. Balis, Amy L. Yaroch

Journal of Patient-Centered Research and Reviews

Purpose: Medically tailored meal (MTM) programs generally demonstrate meaningful health outcomes for patients. There is a need to evaluate novel MTM delivery methods to understand participant and organizational-level impacts. The objectives of this study were to assess a shipped MTM pilot intervention, including 1) initial and ongoing client reach, 2) effects on clients’ health and behaviors, and 3) staff members’ perceptions of factors that influence intervention maintenance.

Methods: Based on the reach, effectiveness, adoption, implementation, maintenance (RE-AIM) framework, the mixed methods design included quantitative data collected from participants and qualitative data collected from MTM provider staff. The pilot took place …

Do Young Belugas Play More Or Less Than Adult Belugas?, Winter Saldana

Posters - 2026

★ The presence of play is used as an indicator of well-being in many species including belugas (Hill et al., 2017; Hill & Ramirez, 2014). ★ Adult and young belugas engage in similar types of play, but the frequency with which belugas play with objects, the actions used during those object play bouts, and the type of materials the objects consist of have not been examined in detail (Hill & Ramirez, 2014). ★ The purpose of this study was to explore if object play exhibited by belugas varied in frequency of play bouts, actions, and materials used by young and …

Evaluation Of Prosthetic And Orthotic Technologies Using Ai Technology, Iris Reyna, Samerial Brown, Gary Guerra, Ed Khu

Posters - 2026

Individuals with lower limb prosthetics have amputations and abnormal limb motions, which poses a high risk of injury when doing everyday activities. In this field, evaluation of individuals' prosthetics are done through biomechanical analysis and gait analysis. This analysis is used to study human movement and evaluate the mobility and quality of life of amputee patients as well as determining the modifications, positioning, and alignment needed to ensure stability with prosthetic and orthotic technologies (Kumar & Bhowmik, 2024). Trunk flexion has importance to the study because of its impact on lower limb kinetics, kinematics, the increase of ground reaction forces, …

The Effects Of Cannabis Use On Physical Activity, Nitya Chiru, Brionna L. Smith, Karen L. Cropsey, Elizabeth K. Lee

Expo Student Presentations

2026 Spring Expo Poster Presentation

• Biological & Life Sciences

Improving Cannabis Sativa's Phytoremediation Capabilities Of Forever Chemicals Through Microbial Inoculations, Tyler S. Jolin

All NMU Master's Theses

Per- and polyfluoroalkyl substances (PFAS) are persistent environmental contaminants that pose ecological and human health risks due to their resistance to degradation and potential for bioaccumulation. Phytoremediation has emerged as a potential strategy for mitigating PFAS contamination, and plant-microbe interactions may influence contaminant uptake and transport within plant systems. These studies investigated microbial inoculation methods and examined whether Bacillus subtilis could influence the uptake and distribution of perfluorooctane sulfonate (PFOS) in hydroponically grown hemp (Cannabis sativa L.). Plant height and stem diameter growth rates and biomass accumulation were compared across treatments with and without PFOS exposure and microbial inoculation. PFOS …

Detection And Quantification Of Allergen Cross-Contact In Shared Frying Oil Using Targeted Mass Spectrometry, Francisca Asigri

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Cow’s milk and egg allergies are prevalent IgE-mediated food allergies that pose significant public health concerns worldwide. Although strict avoidance remains the primary management strategy, unintended exposure can still occur through allergen cross-contact, particularly in commercial and industrial food operations that utilize shared frying oils. The objective of this study was to identify and quantify allergen transfer in shared frying oil and assess the robustness of existing targeted mass spectrometry methods (LC-MS/MS) for detecting milk and egg proteins in heated oil matrices.

Heated oil spikes were developed by incorporating non-fat dry milk (NFDM) and whole egg powder (WEP) into oil …

Regional Price Index 2025, Department Of Primary Industries And Regional Development, Western Australia

Statistics

The 2025 Regional Price Index (RPI) is the 12th State Government index comparing the cost of a common basket of goods and services in regional Western Australia to the Perth metropolitan area.

Small Jellyfish, Large Consequences: The Overlooked Predatory Role Of Hydromedusae In Subtropical Estuarine Ecosystems, Guilherme M. Von Montfort, Kelly R. Sutherland, Sean Colin, John H. Costello, Renato M. Nagata

Arts & Sciences Faculty Publications

Hydromedusae are often overlooked in pelagic trophic ecology compared to large scyphozoans. We investigated the diet, prey selectivity, ingestion rates, digestion times, and predation impacts of the native Liriope tetraphylla and non-indigenous species Cnidostoma fallax and Moerisia inkermanica in a subtropical estuary of the southwestern Atlantic. While all three species predominantly consumed copepods, L. tetraphylla exhibited the broadest diet and highest number of preys in gut content (up to 13). Digestion time for L. tetraphylla decreased significantly with increasing temperature, from 94 min at 18°C to 64 min at 28°C, with Q10 values showing that digestion rates roughly double with …

Comparative Efficacy Of Oral And Cloacal Administration Of Lactobacillus Probiotics And Postbiotics Against Campylobacter Jejuni Colonization In Broiler Chickens, Shreeya Sharma, Hosni Hassan, Khaled Abdelaziz

Publications

Campylobacter jejuni remains a major cause of foodborne illness worldwide, with poultry serving as the primary reservoir. In the absence of commercial vaccines or effective feed additives, probiotics and their byproducts (postbiotics) represent a promising and sustainable approach to reducing Campylobacter colonization in poultry. This study compared the efficacy of oral and cloacal administration of probiotic lactobacilli and their postbiotics in reducing Campylobacter colonization and modulating the cecal microbiome in broiler chickens. Day-old chicks were assigned to seven treatment groups that received either probiotics (live cells of four poultry-derived Lactobacillus strains: L. reuteri P43, L. acidophilus P42, L. animalis P38, …

Final Project: Nutrition And Human Disease, Sam Newberry Ph.D.

School of Arts & Sciences

This assignment is made up of a series of smaller assignments that were developed by SUNY Geneseo Professor Sam Newberry during the spring 2026 semester.

Learning Objectives

• Identify and demonstrate understanding of audience needs
• Identify nutritional issues associated with human disease
• Clear communication of information via an Infographic
• Proper utilization of scholarly sources of information

Biol 210: Nutrition (Syllabus), Sam Newberry Ph.D.

School of Arts & Sciences

This syllabus was developed by SUNY Geneseo Professor Sam Newberry during the spring 2026 semester.

Course Learning Objectives:

Students who are active participants and complete course requirements will be able to: 

1. Demonstrate familiarity with nutrients, their food sources, their functions, and signs and symptoms of deficiency or excess.
2. Demonstrate familiarity with biological, psychological, social and cultural factors that influence human diet and nutrition.
3. Describe and explain in class discussion and on exams the relationship between diet and health, particularly for selected public health issues.
4. Demonstrate familiarity with nutritional guidelines used in the United States, and the challenges of establishing such …

Career Readiness In Developmental Biology Module, Travis Bailey Ph.D.

School of Arts & Sciences

This set of activities were developed and modified by SUNY Geneseo Professor Travis Bailey in the spring 2026 semester.

Biol 454: Developmental Biology (Syllabus), Travis Bailey Ph.D.

School of Arts & Sciences

This syllabus was developed by SUNY Geneseo Professor Travis Bailey in the spring 2026 semester.

Learning Outcomes-Students will:

• Understand the methods scientist use to explore the genetic, cellular, and tissue control of development.
• Compare and contrast developmental strategies of model organisms.
• Read primary literature critically and explain strengths and weaknesses.
• Test hypotheses with self-designed experimentation, measurement and data collection, evaluation of evidence, and employment of mathematical analysis.
• Relate discoveries from model animals to human conditions.
• Communicate findings orally and in writing.
• Integrate multiple bodies of knowledge with their personal experience by asking meaningful questions about real-world problems
• Apply skills, theories, …

All-Cause And Cause-Specific Mortality In Patients With Bipolar Ii Disorder, Chih-Wei Hsu, Yang-Chieh Brian Chen, Edward Chia-Cheng Lai, Andrew A Nierenberg, Michael Berk, Sheng-Yu Lee, Liang-Jen Wang, Mu-Hong Chen, Yao-Hsu Yang, Chih-Sung Liang, Andre F Carvalho

Children’s Nutrition Research Center Staff Publications

Importance: Whether bipolar II disorder (BD-II) is associated with increased long-term mortality remains uncertain because most studies have not distinguished BD-II from bipolar I disorder (BD-I).

Objective: To examine whether BD-II is associated with elevated all-cause and cause-specific mortality compared with population controls, unaffected siblings, and those with BD-I.

Design, setting, and participants: This population-based, retrospective cohort study used data from Taiwan's National Health Insurance Database from January 1, 2000, to December 31, 2022. Individuals 12 years or older with 2 or more psychiatrist-assigned BD-II diagnoses were individually matched to 4 controls without BD-II by sex and birthdate. Additional comparisons …

A Computational Assessment Of Halobacterium Salinarum Glutamate Dehydrogenase Enzymes, Maaz Abdalla

Theses

Glutamate dehydrogenase (GDH) is a hexameric enzyme. GDH is involved in several pathways and cellular processes such as oxidation-reduction homeostasis, ammonia metabolism, lipid biosynthesis, insulin and lactate production, and acid-base equilibrium. The main objective of this thesis is to understand the structural and biochemical properties of this enzyme and why some organisms, for e.g., Halobacterium salinarum, have more than one GDH with different coenzyme specificities. The catabolism of glutamate is linked to NAD+ specific GDHs, meanwhile, NADP+ specific GDHs play an anabolic role in ammonia assimilation. Molecular docking and binding free energy calculations were employed followed by long-scale (500 nanoseconds) …

Comparative Evaluation Of Five Bacterial Strains For The Fermentation Of Camel Milk, Sifatun Nesa Ali

Theses

In this study, the comparative fermentation performance of lactic acid bacteria Streptococcus thermophilus, Lactobacillus delbrueckii subsp. bulgaricus, Lb. helveticus, Lb. casei, and Lactiplantibacillus plantarum in Camel Milk (CM) and Bovine Milk (BM) was investigated. Fermentations were carried out at 42°C for 48 hours, and was monitored through bacterial growth, titratable acidity, pH evolution, proteolytic activity, microstructural properties, and rheological characteristics. Although comparable bacterial viability was observed in CM and BM, acidification kinetics varied significantly between CM and BM (p < 0.05). Proteolysis was significantly higher in fermented CM than in BM (p < 0.001), with consistently greater o-Phthalaldehyde Assay (OPA) values in CM across all strains during fermentation (p < 0.001). Scanning electron microscopy revealed more porous, loose protein matrices in fermented CM than in BM, which supports the rheological results showing weaker gel networks and lower rheological strength in fermented CM. Among the tested bacteria, Lb. casei demonstrated superior adaptability, enhanced viability, balanced acidification, and favorable rheological properties in both milks. Overall, the results of this thesis demonstrate strain-specific fermentation responses and support the possible suitability of different starter cultures for improving the technological performance of fermented camel milk products.

Optimizing Duckweeds Harvesting Strategies To Maximize Nutrient Recovery And Its Role As A Phytosensor In Different Water Sources While Maintaining Sustainable Biomass Growth, Basma Ghannam

Theses

This thesis is concerned with determining the optimal water treatment and harvesting strategy for Lemna minor duckweed plants. The main objective of this thesis is to examine how duckweed plants grow in terms of biomass, photosynthetic activity, leaf morphology, chlorophyll and carotenoid content, and their efficiency in nutrient removal from different water sources. The methodology of the study included assessing duckweed in three water samples including tap water, saline water, and greywater and three harvesting strategies, including low, medium, and high harvesting intensities to assess their growth and nutrient removal efficiency. The results of the study showed that L. minor …

Lactation-Stage Specific Protein Shifts In Koala Milk Mirror The Joey's Growth Needs, Manujaya W. Jayamanna Mohottige, Angéla Juhász, Emma Peel, Mitchell G. Nye-Wood, Katherine A. Farquharson, Tawfeek Khedr, Katherine Belov, Carolyn J. Hogg, Michelle L. Colgrave

Research outputs 2022 to 2026

AbstractKoalas (Phascolarctos cinereus) give birth to highly altricial young that rely on maternal milk for nutritional support and immune protection in the first year of life. This study applied proteomics to analyse stage-specific shifts in the koala milk proteome across early-, mid-, and late-lactation. Proteins were extracted from seven samples and analysed using liquid chromatography-tandem mass spectrometry. Quantitative profiling identified 874, 1220, and 498 proteins in early-, mid- and late-lactation stages, respectively. The most abundant proteins—including β-lactoglobulin, caseins, clusterin, trichosurin, albumin and lactotransferrin—were consistently detected across all stages, reflecting crucial roles in nutrition, immune function, and detoxification. Protein–protein interaction analyses …

The “One Big Beautiful Bill” Will Deepen The Farm Crisis, Not Solve It, Rebecca Schewe, Rick Welsh

Center for Policy Research

The One Big Beautiful Bill (OBBB) promises billions in new farm subsidies, but most of that money won’t go to the farmers who need it most. This brief describes how the OBBB’s changes to agricultural subsidy programs will disproportionately benefit large farms and non-farming investors, accelerating farm loss and consolidation across the United States. The authors argue that without reforms, the OBBB will inflate land values, raise barriers for new and small farmers, and further fuel absentee farmland investment. The authors also identify four reforms policymakers should enact to prevent these devastating consequences, including tightening payment limits and closing loopholes, …

Blink & Beat: Pupillometry Response In Autonomic Nervous System Monitoring, Ximena Castillo

2026 Spring Honors Capstones Projects

In the neuroscience intensive care unit (NSICU), nurses rely on advanced monitoring tools to detect neurological deterioration. Two noninvasive measures, heart rate variability (HRV) and pupillary light reflex (PLR), are used to assess autonomic nervous system function; however, it remains unclear whether these indicators provide overlapping or distinct information. The purpose of this observational prospective study is to evaluate the relationship between HRV and quantitative pupillometry measurements to determine whether these noninvasive indicators provide congruent information. Data already collected as routine care from NSICU patients is extracted from the medical record for analysis. Understanding the correlation between HRV and PLR …

Sustainable Mitigation Of Microplastic Pollutants Using Native Plant Species, Antonio De Jesus Martinez De La Rosa, Emily Lancaster

Research Papers

Microplastics (MPs) are defined as small plastic particles that come from the degradation of plastics [Ziani et al. 2023], that hold a regular or irregular shape, ranging from 1μm to 5 mm [Campanale et al. 2025]. This diminutive size makes them virtually impossible to remove once released into the environment[Lee et al. 2023]. Furthermore, biological, chemical, and physical processes break MP's further down in the environment, causing them to exist in nano-level sizes (1nm-1μm) [Lee et al. 2023], further exacerbating their threat to critical habitats. However, recent studies have shown MP contamination expands beyond the natural environment as recent studies …

Teeth That Tell Time: Elemental Analysis From Shark Teeth, Gisele-Elizabeth Perez, David Turner

Research Papers

Sharks (Chondrichthyes) have hunted in the oceans for over 400 million years, their teeth leaving history behind, constantly becoming a part of the fossilization process (Worm et al. 2013). Their survival throughout 5 major extinctions is due to their ability to adapt easily with slow metabolism, a wide range of diet, and an efficient physiology. Shark teeth are vital to the hunting and consumption of their prey, making it a point for scientists to study them. Their tooth minerals contain fluorapatite in their enameloid, and dentin in the “root” of the tooth, with extinct species containing dentin and hydroxyapatite in …

Teeth That Tell Time: Elemental Analysis From Shark Teeth, Gisele-Elizabeth Perez

Posters - 2026

Sharks (Chondrichthyes) have hunted in the oceans for over 400 million years, their teeth leaving history behind, constantly becoming a part of the fossilization process (Worm et al. 2013). Their survival throughout 5 major extinctions is due to their ability to adapt easily with slow metabolism, a wide range of diet, and an efficient physiology. Shark teeth are vital to the hunting and consumption of their prey, making it a point for scientists to study them. Their tooth minerals contain fluorapatite in their enameloid, and dentin in the “root” of the tooth, with extinct species containing dentin and hydroxyapatite in …

Sustainable Mitigation Of Microplastic Pollutants Using Native Plant Species, Antonio Martinez

Posters - 2026

Microplastics (MPs) are defined as small plastic particles that come from the degradation of plastics [Ziani et al. 2023], that hold a regular or irregular shape, ranging from 1μm to 5 mm [Campanale et al. 2025]. This diminutive size makes them virtually impossible to remove once released into the environment[Lee et al. 2023]. Furthermore, biological, chemical, and physical processes break MP's further down in the environment, causing them to exist in nano-level sizes (1nm-1μm) [Lee et al. 2023], further exacerbating their threat to critical habitats. However, recent studies have shown MP contamination expands beyond the natural environment as recent studies …

Mapping Sensory Landscapes: Distribution And Arrangement Of The Anterior Lateral Line System In Texas Catfish, Tatiana Flores, Ruben Tovar

Research Papers

Fish have a system of sensory organs known as the lateral line system. This system contains numerous mechanoreceptive neuromasts and electroreceptive ampullary organs (Northcutt et al, 2000). Neuromasts are small, hair-like structures located within canals in the lateral line system just under the fish’s skin and are open to the environment through small pores visible on its skin (Parker, 2025). Water flows into these canals through the pores which stimulates the sensitive hair cells, resulting in electrical signals sent to the fish’s brain. The brain interprets these signals and creates “images” of the fish’s surroundings, helping it to see even …

Leveraging Aspiring And Inspiring Mentorship Relationships To Promote Stem Persistence, Rayann K. Hoppe

Honors Thesis

While several mentorship interventions for STEM students already exist, persistence and retention in STEM fields remain relatively low. Additionally, there is limited research examining the intersections between aspiring (upward) and inspiring (downward) mentorship roles.

This article aims to address these gaps by examining existing literature and mentorship frameworks, with a focus on how mentorship dynamics influence STEM persistence. Two principal findings emerge from the literature: (1) effective mentorship should be conceptualized as an interconnected ecosystem rather than a hierarchical structure, and (2) the intersection of aspiring and inspiring roles contributes to the development of identity, self-efficacy, and a sense of …

Ecological Studies Of Wolves On Isle Royale, Sarah R. Hoy, Rolf O. Peterson, John A. Vucetich

Ecological Studies of Wolves on Isle Royale

Annual Report 2025-2026