Digital Commons Network^™

Interspecific Overlap In Seabird Diet Throughout The Breeding Season, Alexis V. Berkey

Student Publications

Seabirds are central-place foragers that breed in multi-species colonies, providing an opportunity to study species coexistence. I quantified interspecific competition among four seabird species (common terns Sterna hirundo, Arctic terns Sterna paradisaea, Atlantic puffins Fratercula arctica, black guillemots Cepphus grylle) breeding in the Gulf of Maine in 2022, 2024, and 2025. I hypothesized that, throughout the breeding season, 1) seabird diet would change and 2) interspecific overlap in diet would increase. I compared diets across species and time using direct observation of prey feeds and stable isotope values of seabird egg membranes and blood, which provide …

Life Line Spring 2026, Jonathan Atwood

Life Line - The Biology Department Newsletter

In This Issue:

Greetings and Farewell: Part Deux; Signs for Trees; Passing of Dr. Mary Gahbauer: a Beloved Friend and Colleague; Dr. Lisa Marr Retires; The Department Welcomes Dr. Ann Feke; Dr. Kevin Svitana Retires; Ms. Donna Rhodeback Retires; Tucker Adds Swan Specimen to Otterbein's Collection; An UnbeLEAFable Year for the Otterbein Chapter of Botanical Society of America; Field Geology Course Visits Death Valley and Beyond; Agar Art: An Unexpected Canvas; Dr. Kevin Svitana Wins the Anderson Award for Outstanding Contribution to Groundwater Research; Introducing Opi: A New Face for Zoo and Conservation Ambassador Work; Michael Hoggarth, Professor Emeritus, Wins …

Qualitative And Quantitative Analysis Of The Sk-3 I398 Interval In Neurospora Crassa, Tapasvi Bhatt

Senior Theses – Biological Sciences

Spore killer-3 (Sk-3) is a selfish genetic element on Chromosome III of Neurospora that biases its own transmission by killing meiotic products that fail to inherit the element. Although the resistance component of Sk-3 is known, the killer has not been identified. Previous deletion mapping confined the candidate killer region to a small block of DNA near interval i350 and suggested that the nearby 178 bp interval i398 might show different behavior in qualitative versus quantitative assays. The goal of this thesis was to construct and analyze an Sk-3 i398Δ strain and determine whether deletion of i398 …

Editorial 2026, Maud I. Tenaillon, Laura A. Katz

Biological Sciences: Faculty Publications

No abstract provided.

Differential Effects Of Veratridine And 5-Fluorouracil On Ubxn2a-Targeted Mortalin And Rictor Proteins In Patient-Derived Colorectal Cancer Cells, Kate S. Schraufnagel

Honors Thesis

Colorectal cancer (CRC) is a leading cause of cancer-related mortality, particularly in patients with metastatic CRC and/or those who have developed resistance to conventional chemotherapy. There has been a significant rise in early-onset CRC (EOCRC) incidences in patients under age 50. Due to lack of screening, these patients are commonly diagnosed in the later stages where there is a lack of effective therapies. This highlights the need for targeted therapies that address the molecular drivers of tumor progression and treatment resistance. UBXN2A is a tumor suppressor protein that regulates key oncogenic pathways in CRC, including Mortalin-2 (mot-2)-mediated p53 suppression and …

Evolution As Spatial Projection, Charles H. Smith, Ngoc Nguyen

Faculty/Staff Personal Papers

A theory combining explanations for the nature of three-dimensional systems and evolutionary processes is advanced, set to a geometric simulation, and then discussed in the context of several empirical studies bearing on its validity. The concept “evolution” is first discussed, then related to Baruch de Spinoza’s ideas on natural philosophy, including his concept of the conatus. These ideas are then extended by posing the possible existence of a general form of natural systems subsystemization leading to the extended space condition. A geometrical/topological simulation study projecting spatial relations among subsystem structures interpretable through entropy maximization and multidimensional scaling methods is presented, …

Nedd 4 Pyre-Fighters To Extinguish Inflammation: Nedd4l Ubiquitinates Gasdermin D And Gasdermin E To Dampen Pyroptosis, Kailash Gulshan

Biological, Geological, and Environmental Faculty Publications

No abstract provided.

Imidacloprid Effects On The Survival And Cutaneous Microbiome Of Northern Leopard Frogs, Evelyn Margaret Osterloo

Honors Thesis

Amphibians are experiencing population declines due to habitat loss, climate change, and diseases, particularly chytridiomycosis caused by the fungus Batrachochytrium dendrobatidis. Protection from this fungal infection stems from the cutaneous microbiome. Pesticides have been shown to affect amphibians in a variety of ways, including reducing survival, locomotor performance, and accumulation in body tissues. Pesticides may also lead to changes in the cutaneous microbiome affecting amphibians who rely on these organisms as an anti-Bd defense mechanism. To investigate the effect of imidacloprid, a neonicotinoid insecticide, Northern Leopard frogs (Lithobates pipiens) were subjected to sublethal concentrations (control = …

Music Listening While Studying And Academic Performance Among College Students With Attention Deficit And Hyperactivity Disorder, Raihan K. Khan, Md Towfiqul Alam, Madalynn Nofplot, Sojib Bin Zaman, Catherine L. Zaman

Faculty Scholarship

Evidence on whether music listening supports academic performance, particularly among students with attention deficit and hyperactivity disorder (ADHD), remains mixed. We explored associations between music listening while studying and academic performance (GPA: grade point average) among college students, and to evaluate whether the associations differed by ADHD status. We analyzed cross-sectional survey data from college students and conducted linear regression models with self-reported GPA as the dependent variable. Models were adjusted for sex, academic level, college affiliation, primary study location, weekly study hours, and preferred genre of music. A total of 541 students participated. Most of the students were at …

Ellie - Exteroceptive Light Locomotion In Eukaryote-Fungi, Brandon Etwarroo

Doctoral Dissertations and Master's Theses

Over the past decade, fungal research and its technological applications have expanded across multiple disciplines, including the emerging field of biohybrid systems. This thesis develops and evaluates a wireless, untethered mobile robot controlled by the action potential-like activity generated by Pleurotus ostreatus sporocarps under red, green, and blue optical stimulation. Light is applied to the sporocarps, the resulting electrical responses are recorded, and these signals are transmitted wirelessly to actuate the mobile robot. Both the action potential-like activity patterns and the robot’s movement trajectories were analyzed. The results demonstrate that wireless robotic control mediated by fungal electrophysiology is feasible. Overall, …

Arkansas Cotton Variety Tests 2025, F. Bourland, J. Gann, B. Lovelady, B. Guest Jr, J. Mcalee, L. Martin, Z. Treadway, C. Henderson

Arkansas Agricultural Experiment Station Research Series

The primary goal of the Arkansas Cotton Variety Tests is to provide unbiased data regarding the agronomic performance of cotton varieties and advanced breeding lines in the major cotton-growing areas of Arkansas. This information helps seed companies establish marketing strategies and assists producers in choosing varieties to plant. These annual evaluations will then facilitate the inclusion of new, improved genetic material in Arkansas cotton production. Adaptation of varieties is determined by evaluating the lines at five University of Arkansas Division of Agriculture research sites (Manila, Keiser, Judd Hill, Marianna, and Rohwer). The tests at Rohwer were abandoned due to undefined …

The Relationship Between Stress And Postpartum Depression-Related Behavior In Females And Its Potential Contribution To The Maternal Mortality Rate In The U.S., Sarah Chugh

Senior Theses

Stress, especially social stress, has been a leading cause of disruptive emotional behavior in humans, with pregnant and postpartum women being the most vulnerable to these effects. Our study aimed to investigate the effects of gestational social stress on postpartum behavioral outcomes. To accomplish this, we examined the following four key behaviors in female rats after being exposed to chronic witness stress (WS) during pregnancy: burying, freezing, rearing, and grooming. Burying behavior is used to assess a defensive response to threatening situations. Freezing responses are evaluated to show heightened fear or hypervigilance that follows stress. Rearing is measured as an …

Increased Backbone Rigidity Of Artificial Transcription Factors, Jasmine Glover, Emma Otey, Joanna K. Kwao, Nicholas Truex

Senior Theses

Programming DNA-binding proteins is an effective strategy for developing therapeutics that regulate gene expression. These proteins can directly bind to DNA to activate or repress transcription of specific genes. Zinc finger proteins are a class of DNA-binding proteins commonly found in eukaryotic organisms. Their DNA-binding function is derived from unique amino acid sequences within each domain that recognizes specific nucleotides, allowing each finger to selectively recognize three DNA base pairs. Adjoining of multiple domains in tandem allows recognition of a specific DNA sequence. Artificial transcription factors can be made of multiple zinc finger domains arranged in tandem and engineered to …

Evolution Of Antibiotic Responses During Chronic P. Aeruginosa Infections In The Human Lung, David Frank Ritz

Dartmouth College Ph.D Dissertations

Typical antibiotic susceptibility testing (AST) of microbial samples is performed in homogeneous cultures in batch environments, which does not account for the highly heterogeneous and dynamic nature of antibiotic responses. The most common mutation found in P. aeruginosa lineages evolved during chronic cystic fibrosis infections in the human lung, a loss of function of repressor MexZ, increases basal levels of multidrug efflux MexXY, but does not increase resistance by traditional minimal inhibitory concentration (MIC) assays. Here, we use single cell microfluidics to show that P. aeruginosa’s response to aminoglycosides is highly heterogeneous, with only a subpopulation of cells surviving exposure. …

Analyzing Antibody Immune Response In Α1,3galt-Ko Mice After Intranasal Vaccination Of Α-Gal Virus-Like Particle, Faith Brown

Honors Theses

In this study, we evaluated the immunogenicity of intranasal immunization with α-Gal-conjugated virus-like particles (VLPs) in an α1,3-galactosyltransferase-knockout (α1,3GalT-KO) mouse model that mimics the human immune response to the α-Gal epitope. The carbohydrate epitope galactose-α-1,3-galactose (α-Gal) is expressed on the cell surface of several pathogens, including Leishmania species. This molecule is absent in humans and has emerged as a promising immunogenic vaccine target. α1,3GalT-KO mice were intranasally immunized with 10 μg either Qβ-α-Gal or Qβ per nostril and boosted twice prior to sample collection. Blood and lung lavage samples were used to evaluate the antibody response. The Qβ-α-Gal group developed …

Effects Of “Zero Sugar” Energy Drinks On Microbial Proliferation In Relation To The Gastrointestinal Microbiome, Madison Hines

Honors Theses

Energy drinks have rapidly increased in popularity and availability in recent years. With the rise of high-caffeine beverages, complications due to caffeine consumption have become more common in younger populations. The aim of this study was to use controlled laboratory methods to determine the effect of energy drinks on a variety of organisms commonly found in the gastrointestinal (GI) tract. The diverse and dynamic nature of microbes in the gut makes conditions of the GI tract difficult to replicate in a laboratory setting. As an alternative, isolates of bacteria commonly found as normal flora in the GI tract were plated …

The Impact Of Pp1Β Cancer-Associated Polymorphisms On Pp1Β Protein Abundance And Cell Survival In Humanized Saccharomyces Cerevisiae, Kaylee Martinez

Honors Theses

PP1β is an understudied protein phosphatase that affects the cell’s ability to reproduce. It has been known to be an important part of the cell cycle. Mutations within PP1β have been found to affect that process and influence the development of cancer and disease. In this thesis, different PP1β cancer and disease associated polymorphisms are investigated through the use of humanized yeast. PP1β yeast variants are tested by using Live/Dead cell assay and western blot techniques. Live/Dead analysis was conducted on different strains grown at permissible temperature (room temperature) and non-permissible temperature (37°C) over the course of 6 or 48 …

Growing South Dakota (Spring 2026), College Of Agriculture, Food, And Environmental Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 2 National heritage, statewide research, local impact
[Page] 7 About the South Dakota Agricultural Experiment Stations
[Page] 14 Managing the mooo-ment: How SDSU researchers are looking to improve cow health during the Transition Period
[Page] 18 Discovering strength in science: How education through undergraduate research prepares students for the future
[Page] 20 From India to Brookings: One grad student’s path to make a world of difference in virology
[Page] 22 Solving a billion-dollar problem: Identifying disease-resistent wheat genes
[Page] 24 Unlocking manure’s potential: SDSU leads multistate study on the power of swine manure in growing better crops
[Page] 28 …

Developing A Range Prediction For The Imperiled Florida Harvester Ant (Pogonomyrmex Badius) Using Species Distribution Modeling, Noah Williamson

Honors Theses

The Florida Harvester Ant (Pogonomyrmex badius) was once widespread and commonplace throughout the sandhills of the Southeastern United States, providing key ecosystem services, such as seed dispersal and soil aeration. Over recent decades, however, Florida Harvester Ant populations have declined in some areas. Current literature postulates that Red Imported Fire Ants (RIFA), and the insecticides used to manage them, as well as further human encroachment onto their habitat, all likely contributed to Florida Harvester Ant population declines. Thus, to better protect these organisms, pursue data-driven conservation efforts, and guide management practices, more information about their nest site selection, as well …

Abundance Of Microplastics In The Water And Stream Fish Of Big Walnut Creek, David J. Hartman

Undergraduate Honors Thesis Projects

Microplastics are a major threat to both ecosystem and human health. In this study, I investigated the abundance of microplastics at five sites along Big Walnut Creek, Ohio including sites upstream, downstream, and within urban development. Samples were taken from the stream surface water and fish at each site. Microplastics were detected in the surface water and fish at all five sites with a total of 383 microplastic particles found in the 157 fish collected for this study. The mean concentration for all sites was 80.8 particles/m3 in the surface water and 2.4 particles per fish. Microplastics were almost entirely …

The Missing Lynx: Investigating Passive And Active Rewilding With The Eurasian Lynx, Isaiah Charles, Tatiana Flores, Isabella Lopez

Conservation Biology

The Eurasian Lynx (Lynx lynx) is a wild cat native to the boreal forests, mountains and grasslands of Europe and Asia (Bhattacharyya, 2025). The Eurasian lynx keep ungulate populations in check which allow for forests to recover from overgrazing, promoting biodiversity and ecological balance. However, the Eurasian lynx had become locally extinct across Europe by the 1900s due to habitat loss, hunting by farmers in retaliation for predation of livestock and the illegal fur trade. Conservation and ecological restoration efforts to rebuild the lynx population have been underway. Rewilding is a form of ecological restoration involving the reintroduction of a …

The Importance Of Body Size And Spatial Scale In Modeling Winter Bird Distributions, Carissa M. Mobley

Student Publications

Birds’ annual cycles include biologically linked breeding and non-breeding seasons, yet most research and bird atlases focus exclusively on the breeding season. There have been very few winter bird atlas projects in North America, and none have been published for the northeastern United States. Short daylight hours and harsh weather limit winter survey coverage, making species distribution models (SDMs) essential for addressing spatial gaps.

I evaluated the optimal spatial scale for SDMs across bird species differing in body size and tested whether optimal scale varies with body mass. Using 16,967 eBird checklists collected during the first winter survey period (December …

Something In The Air? Uncovering The Air Quality Of St. Mary's University, Isaiah Charles, Keagan Farrell, Antonio Martinez, Andrea Realyvasquez, Kelly Swyers

Presentations - 2026

What is air quality?

Measurement of how clean or polluted the air is in a certain area. The Environmental Protection Agency uses Air Quality Index (AQI), a scale that describes the quality of air. The six major pollutants measured are: •ground- level ozone •particulate matter •carbon monoxide •sulfur dioxide •nitrogen dioxide •lead   Impacts of air pollution
•Acid rain •Climate change •Damage to plants and crops •Loss of biodiversity
•Respiratory illnesses •Cardiovascular damage •Premature death •Coughing and asthma

Pfas And Western Diet Effects On Adolescent Rat Feeding And Metabolism, Whesli Kim

Theses and Dissertations from DePaul University

Per- and polyfluoroalkyl substances (PFAS) are a class of widespread persistent organic pollutants associated with metabolic and neural dysfunction in humans. These processes are also affected by Western diet high sugar high fat contents. However, interacting effects of PFAS exposure and Western diet on metabolic regulation and feeding behavior have not been tested. Exposure to PFAS is high during sensitive gestational and neonatal periods of development. Adolescence is a key period where nutritional demands shift, eating habits are established, and gonadal hormones change. This study tests the hypothesis that early life exposure to PFOS alters adolescent metabolic function and feeding …

Analysis Of Mitochondrial Dna Haplotype Groups For South Texas Canids, Canis Rufus, After Past Hybridization Events, Isabella Lopez

Presentations - 2026

mtDNA: mitochondrial DNA; passed from maternal parent to offspring (Haplotype)

Haplotype:  a group of genes or genetic markers inherited together from a single parent (Haplotype)

Mitochondrial DNA haplotypes specific sequences of mtDNA that is passed exclusively from maternal parent to offspring (Giles et al. 1980)

Pro's:

It is passed unchanged from mother to offspring, meaning it is fairly stable (Giles et al. 1980)

Each cell has multiple mitochondria vs one nucleus , which means mtDNA it is more likely to be recoverable from degraded samples like scat (Templeton et al. 2013)

Microplastic-Mediated Delivery Of Di-Butyl Phthalate Alters C. Elegans Lifespan And Reproductive Fidelity, Chiara Angelyn Maldonado

Presentations - 2026

•The challenge: microplastic contamination •The question: How do microplastics and chemical contaminants affect living organisms? •The follow-up: What’s next!

Raptor Abundance And Occupancy In Urban Parks Within Metropolitan Landscapes, Mary- Esther Leblanc

Posters - 2026

Rapid urbanization is one of the most significant and accelerating drivers of global biodiversity change, reshaping wildlife communities by fragmenting habitat, altering prey availability, and introducing human disturbances. Despite these pressures, some wildlife species are attracted to and may even flourish in urban settings, primarily because urbanization creates an altered landscape that often unintentionally provides resources functioning as components of habitat. (Chiron et al., 2024) Raptors, as apex predators within avian food webs, offer a valuable lens through which to examine these dynamics. While raptor communities are broadly negatively impacted by urbanization, some species can thrive in urban areas. (Leveau …

Untangling G-Quadruplexes In Dna: The Effects Of Nucleotide Excision Repair, Jaidelin Alvardo, Abiageal Riley, Erick Morales Orrante, Raynne Malik

Posters - 2026

Nucleotide Excision Repair (NER) remo ves bulky DNA lesions that are attributed to UV irradiation, environmental mutagens, and chemo-therapeutic agents (Schärer, CSH Perspectives Biology, 2013). G4- quadruplexes are formed by four guanines hydrogen bonded together to form a planar ring, and stacking of the hydrophobic G quartets stabilizes the quadruplex structure Capra et al.,PLoS Computational Biology, 2010). A surplus of this structure is linked to genomic Instability and cancer development.

Prior studies indicate that because NER eliminates large lesions of DNA, there may be a link to the removal of G4-quadruplexes through Nucleotide Excision Repair (De Magis et al, Nature,2020). …

Mapping Sensory Landscapes: Distribution And Arrangement Of The Anterior Lateral Line System In Texas Catfish, Tatiana K. Flores, Ruben Tovar

Posters - 2026

Fish have a system of sensory organs known as the lateral line system. This system contains numerous mechanoreceptive neuromasts and electroreceptive ampullary organs (Northcutt et al, 2000). Neuromasts are small, hair-like structures located within canals in the lateral line system just under the fish’s skin and are open to the environment through small pores visible on its skin (Parker, 2025). Water flows into these canals through the pores which stimulates the sensitive hair cells, resulting in electrical signals sent to the fish’s brain. The brain interprets these signals and creates “images” of the fish’s surroundings, helping it to see even …

Does Habitat Predict Head Shape? A Comparative Geometric Morphometric Analysis Of Eurycea Spp., Sarah Flores-Garza, Alexa Miner, Gianna Montelongo

Posters - 2026

Subterranean environments impose strong selective pressures, including complete darkness and reliance on non-visual sensory systems. In Eurycea salamanders, these conditions are associated with traits such as reduced eyes and expanded head regions that improve sensory detection (Tovar et al., 2025). Subterranean species are often expected to share similar head shapes due to convergent evolution. However, not all species experience these pressures equally. Eurycea latitans is a polymorphic species that inhabits both surface and cave environments. Eurycea sp._NB is an obligate subterranean species, while Eurcyea sosorum is a surface species. This study tests whether habitat predicts head shape in Eurycea, or …