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Neural Correlates Of Recognition Memory And Metamemory In Breast Cancer Survivors: An Event-Related Potential Study, Dishari Zaman Azad

Dissertations, Theses, and Capstone Projects

Breast cancer survivors (BCS) often report noticeable cognitive difficulties despite showing limited impairment on standardized neuropsychological tests. Some have theorized that this is simply an insensitivity of standardized testing to subtle cognitive changes (test-insensitivity hypothesis), whereas others have suggested there are early neural changes that are detected by patients but precede detection by these tests (early signal hypothesis) or that when they achieve normal performance, it is through saliently effortful compensatory processes (compensation hypothesis). The present study tested these theories by assessing metamemory and recognition memory retrieval in BCS and non-cancer controls (NCC) using both behavioral and event-related potential (ERP) …

Mapping Nucleosome Stability: Linking Oncogenic Structural Alterations To Long-Range Allosteric Communication, Augustine C. Onyema

Dissertations, Theses, and Capstone Projects

The nucleosome core particle (NCP) is essential for chromatin structure and function, serving as the fundamental unit of eukaryotic chromatin. Oncogenic mutations in core histones disrupt chromatin dynamics, altering DNA repair and transcription processes. How DNA communicates with histones, and how this information propagates through the histone, has been suggested to be a cooperative process. Here, I investigate the molecular consequences of two mutations, H2BE76K and H4R92T, using 36 µs of all-atom molecular dynamics simulations on Anton2. I also characterize the kinetic correlation within histone/DNA domains via conditional activity (CONDACT) using the dihedral angle as our degrees of …

Myocellular Adaptations To Short-Term Weighted Wheel-Running Exercise Are Largely Conserved During C26-Tumour Induction In Male And Female Mice, Stavroula Tsitkanou, Pieter Jan Koopmans, Calvin Peterson, Ana Regina Cabrera, Ruqaiza Muhyudin, Francielly Morena, Sabin Khadgi, Eleanor R. Schrems, Tyrone Washington, Kevin Murach

Health, Human Performance and Recreation Faculty Publications and Presentations

This study investigated whether performing a translatable murine model of concurrent training after tumour induction affects adaptations in juvenile male and female tumour-bearing mice. Male and female Balb/c mice were injected bilaterally with colon-26 adenocarcinoma (C26) cells or PBS at 8 weeks of age. Half the mice then performed 24 days of voluntary wheel running with progressively increased load (PoWeR training), whereas the rest remained sedentary. Deuterium oxide-based protein synthesis, muscle fibre-type composition and size, protein turnover and mitochondrial markers were assessed 25 days after tumour induction. Average gastrocnemius muscle fibre size was smaller with PoWeR regardless of tumour in …

A Review On Credit Card Electronic Fraud Detection Methodologies, Titilayo Mary Sayikanmi, Ibrahim Adepoju Adeyanju, Bolaji Abigail Omodunbi

Mansoura Engineering Journal

Credit card fraud remains a critical and escalating challenge within the global financial ecosystem, driving substantial annual losses and necessitating the continuous evolution of detection methodologies. This paper presents a systematic literature review, conducted via the Preferred Reporting Items for Systematic Reviews and Meta-Analyses framework, which comprehensively analyzes the state-of-the-art in electronic credit card fraud detection. Through a rigorous examination of 49 high-quality studies, this review maps the methodological evolution from traditional rulebased systems and statistical models to advanced artificial intelligence techniques, including machine learning, deep learning, and graph-based approaches. The analysis reveals that while individual methods possess distinct advantages …

Vergence Task-Based Neural Pathways With Binocularly Normal Vision And Comorbid Persistent Post-Concussive Symptoms -Convergence Insufficiency, Ayushi Sangoi

Dissertations

Binocular dysfunctions are more prevalent in the persistent post-concussive symptoms (PPCS) population than in the general population. The most prevalent binocular disorder is convergence insufficiency (CI), affecting 3-17% of the general population and up to 10 times as many people with PPCS. CI makes it difficult to fuse or maintain fusion on targets at near, and its symptoms include double or blurry vision and headaches when performing close-range tasks such as reading, which can exacerbate PPCS symptoms. Given controversy over the subjectivity and effectiveness of diagnostic tools and symptom surveys for both PPCS and CI, understanding why CI has high …

The Effect Of Incompatibility Types On The Escalation Of Global Armed Conflicts, Michael Haratua Rajagukguk, Ruben Cornelius Siagian Rcs

Journal of Terrorism Studies

Global armed conflicts show variations in intensity influenced by the type of issue incompatibility. This study aims to analyze the influence of territorial, ideological, and combined incompatibilities on the probability of high-intensity conflict escalation, as well as its implications for conflict mitigation strategies. Global conflict dyadic data were analyzed using a multilevel logistic regression model with controls for time, region, and conflict type. The results show that ideology-based conflicts have a lower probability of reaching high intensity than territorial conflicts (OR ≈ 0.51, p < 0.05), while conflicts with a combination of ideology and territory tend to be at greater risk of high escalation (AM effect ≈ +26.6 points), although the effect is not yet statistically significant. Temporal analysis shows a downward trend in conflict intensity over time, especially in the post-Cold War period, while regional effects and conflict types show significant variation. These findings fill a gap in the literature on the dual interaction of ideological and territorial claims, showing that the highest escalation of violence occurs when symbolic and material dimensions are intertwined. In conclusion, conflict escalation is more influenced by a combination of issues and structural characteristics of conflict than by ideology alone. The novelty of this research lies in the identification of the strengthening effect of dual incompatibility and the downward trend in conflict intensity after the Cold War, which emphasizes the importance of a relational and temporal context-based mitigation approach in global conflict management.

Intervention Levers For Stunting Reduction In Indonesia: Evidence From The 2023 Indonesian Health Survey Data, Iwan Ariawan, Hafizah Jusril, Zahra Izza Afifa, Azka Fitri, Elmarizha Sekar Utami, Mikail Hasan, Dwi Puspasari

Kesmas

Stunting remains the largest public health challenge among macro-nutrition problems in Indonesia, affecting almost a quarter of children under five in 2023. The prevalence is considered high according to the World Health Organization standard. This study analyzed 15 aggregated provincial variables from the 2023 Indonesian Health Survey using Structural Equation Modeling (SEM), focusing on determinants of stunting among children under two to identify primary intervention levers. Findings indicated that intervention urgency should focus on the first 1,000 days, particularly the steep increase in stunting prevalence observed in the 12–24-month age range. While the highest prevalence is in Eastern provinces (e.g., …

Is Trimethylamine N-Oxide A Friend, Foe, Or Hormetic Agent In Patients With Parkinson’S Disease: A Focused Review Of One Microbial Metabolite, Abraham B. Alton

Student Works

This review synthesizes recent literature examining trimethylamine N-oxide (TMAO) synthesis and its potential role in Parkinson’s Disease (PD) pathology. An increase in TMAO plasma and CSF concentration is associated with PD progression and severity. TMAO biosynthesis is a two-step process. First, precursors including carnitine and choline are converted to trimethylamine (TMA) by gut microbes. Second, TMAO is oxidized to TMAO in the liver. Once absorbed into circulation TMAO crosses the blood brain barrier and may influence PD disease pathology by increasing neuroinflammation and astrocyte activation and damaging the cerebral lymphatic system. These mechanisms may contribute to the cognitive and motor …

Impact Of Package Dimension Changes On The Consumer’S Perception Of Ready-To-Eat Meal Serving Size, Greg Roskos, Koushik Saha

Journal of Applied Packaging Research

Consumers increasingly scrutinize changes in food packaging, particularly in the context of “shrinkflation,” yet little empirical work has examined whether small dimensional changes in primary packaging affect perceived value when product weight is held constant. This study investigates the impact of minor tray dimension changes on consumers’ perception of serving size and product quality for ready-to-eat (RTE) frozen meals. Three single-compartment tray formats were evaluated: a control tray, a larger-volume tray (~18% increase), and a hybrid tray with an intermediate volume (~8% increase). All trays contained identical net product weight. Thirty-six untrained panelists from a local community participated in a …

Patents And Technology Evolution: Altering Innovations And Innovators Via Patent Influences, Richard Gruner

Journal of Intellectual Property Law

Technologies improve primarily through evolutionary change not rational optimization. New technologies emerge as attempts to solve practical problems, the technologies are tested in marketplaces to determine if they are superior in cost and function to alternatives, and those that fare well in the testing gain widespread adoption.  Widely adopted technologies, and their problems, form the basis for the next round of technology improvements and evolution.  Through these steps, evolutionary processes lacking rational direction can generate changing technologies matched to the desires and problems of present society.

As they operate to advance diverse technologies, evolutionary processes governing technology change are subject …

Feeding Mechanics And Digestive Physiology Of Map Turtles, Michael Christopher Fulbright

Doctoral Dissertations

The objective of this research was to relate the form of the map turtle feeding apparatus to its function and digestive physiology. Female map turtles (Genus Graptemys) exhibit pronounced differences in their head shapes and prey bases in the wild. I measured voluntary bite force in megacephalic Pearl River map turtles (G. pearlensis) and microcephalic Sabine map turtles (G. sabinensis) along with a suite of morphological characteristics. I found that many morphological characteristics are good predictors of bite performance in both megacephalic and microcephalic map turtles, and that the commonly used metric of head width noted in other studies of …

Compsobuthus Hadeki Sp. N. From Iraq (Scorpiones: Buthidae), František Kovařík, František Šťáhlavský

Euscorpius

A new species, Compsobuthus hadeki sp. n. from Iraq is described and fully complemented with color photographs and compared with morphologically the most similar species, C. matthiesseni (Birula, 1905). The two species can be unequivocally separated by the following morphological features: in C. hadeki sp. n., movable finger of pedipalp bears 9 rows of granules; telson with aculeus shorter than vesicle, and metasoma III with 10 carinae. Cytogenetic analysis was performed, revealing a diploid chromosome count of 22 in C. hadeki sp. n.

Selection For Specific Leaf Weight In Reed Canarygrass And Its Effects On The Plant, I T. Carlson, D K. Christensen, R B. Pearce

IGC Proceedings (1977-2023)

Specific leaf weight (SL W, dry weight/unit leaf area) may serve as a selection criterion for forage yield through a positive rela• tionship with photosynthesis. Two cycles of phenotypic selection for high and low SLW were conducted in reed canarygrass (Phalaris anmdinacea L.) to investigate direct and correlated responses, particularly those related to yield and quality of forage. In a space-planted test, average direct responses from two cycles of selection for high and low SLW were 23% and 19%, respectively. Significant correlated responses were obtained for ten traits. Compared with the low-SLW cycle-2 population, the high SLW cycle-2 population averaged …

Limits Of Post-Activation Performance Enhancement: Asymmetry Persists Despite Performance Gains, Talia Thompson, Monique Mokha

Journal for Sports Neuroscience

Post-activation performance enhancement (PAPE) protocols are commonly used to improve power, yet their influence on inter-limb force symmetry remains unclear. This study examined the effects of a PAPE protocol on inter- and intra-session symmetry and performance during a countermovement (CMJ. Ten American football players preparing for the National Football League’s draft completed a complex PAPE protocol consisting of two baseline CMJ trials on dual uniaxial force plates, followed by three sets of maximum effort lower-body lifts (e.g., split squats) alternated with two CMJ trials. Jump height (JH), reactive strength index modified (RSImod), and asymmetry indices for concentric impulse (CIA), eccentric …

European Corn Borer Management In Field Corn, Igor Sulzbacher Schardong, Francis Reay-Jones

Agronomic Crops

In the past, European Corn Borer (ECB) was considered a billion-dollar pest. Bt corn was first released in 1996 and its widely adoption reduced ECB populations and economic importance. Resistance to some Bt toxins was detected in Canada, representing a possible threat to corn production. In this paper, we reviewed potential management tactics for ECB in corn.

Visualizing Ozone Pollution In The Denver Metro Area Using A Bioindicator Garden, Ella K. Mathews, Hillary Hamann, Julie Morris, Erica L. Larson

DU Undergraduate Research Journal Archive

Since the industrial revolution, widespread fossil fuel combustion has significantly increased atmospheric pollution. The combustion of fossil fuels releases nitrogen oxides (NOx) and volatile organic compounds (VOCs), which form tropospheric (ground-level) ozone when exposed to sunlight. Ozone directly harms plants by disrupting their ability to absorb carbon dioxide, release oxygen, and carry out photosynthesis. Bioindicator species are plants that have visible responses to environmental conditions, such as ozone, and can act as “canaries in the coal mine,” indicating the health of their environment. In this study, we used a garden of ozone bioindicator species (ozone garden) as a cost-effective tool …

Dr. Jonathan Velotta Faculty Spotlight, Katelyn Trimble

DU Undergraduate Research Journal Archive

An interview with Dr. Jonathan Velotta of the University of Denver's Department of Biological Sciences.

Du Undergraduate Showcase Abstracts: Research, Scholarship, And Creative Works, Sophia Wismar, Henry Staats, Allison Metzler, Chloe Puckett, Rachel Levine, Christa Kilpatrick, Scott Wolf, Joe Walsh, Grace Doolittle, John Engebreston, Zoe Lopez, Christopher Aaby, Audrey Duff, Timothy Sisk, Katelyn Lamberton, Angela Narayan, Gilkah Argueta, Habiba Samir, Girena Tesfazghi, Genet Kenore, Sinit Tesfamariam, Effley Brooks, Abi Newell, Megan Doherty, Natalie Baer, Lexi Blood, Talya Riciputi, Jessica Jimenez, Devin Hernandez, Lynn Clark, Taj Kumar, Sunil Kumar, Allen Rutman, Mira Pronobis, Tess Carson, Anna Sher, Frankie Stroud, Tamra Pearson D'Estree, Alyssa Wilson, Emily Melnick, Jenalee Doom, Yihang Gao, Gwendolyn Geiger, Noah Gettle, Scott Nichols, Clare Ayoub, Cara Dienno, Sunny Walker, Zoe Hansen, Maya Wheeler, Addison Rice, Patrick Martin, Sanjana Acharya, Daniel Mcintosh, Amanda Mckellips, Calli Cain, Justin Blake, Peter Sokol-Hessner, Natalie Miller, Max Weisbuch, Sophia Dellota, John Macikas, Charlotte Snow, Mark Siemens, Zoe Lynch, Alex Huffman, Prachi Shah, Jason Roney, Halcyon Levi, Nicole Herzog, Andrea Koly, Daniel Linseman, Annie London, Xi Yang, Avery Zwisler, Jane Smith, Chaz Contag, Michael Kerwin, Lucy Rand, Grace Schroeder, Michelle Rozenman, Nissa Tapper, Guiming Zhang, Mateo Mazariego-Halpern, Keith Meyer, Julie Do, Dakota Park-Ozee, Travis Herink, Kara Neu, Jonathan Plomin, Eve-Odine Duchaufour, Debbie Gale Mitchell, Tennyson Anderson-Stricklin, Lily Treitz, Samantha Rosenberger, Sierra Griffith, Finley Joseph, Daniel Sampson, Emmy Davis, Skyler Kasnoff, Evon Lopez, Vivian Nguyen, Cassy Young, Franklin Sellner, Martin Tobon, Ila Graham, Zach Billings, Holden Hedit, Decatur Boland, Paul Kosempel, Cory Chandler, Jay Mahoney, Sam Dragan, Susan Dagget, Yarrow Ator, Heidi Vuletich, Owen Weber, Andrew Kloeppel, Petersen Gray, Mandi Schaeffer-Fry, Razleen Bassra, Bryanna Rodriguez, Christina Blue, Taubie Sanders, Rachel Epstein, Luke Milburn, Camryn Evans, Ezra Martinez, Mary Westwood, Gabri Notov, Robin Tinghitella, Lilou Cabrol, Eli Barbour, Juliet Mendik, Selma Myers, Zac Wise, Noah Fahlin, Michelle Knowles, Abigail Hopper, Michael Greenberger, Romi Laclair, Sarah Watamura, Sabrina Efroymson, Casey Barker, Sydney Seltzer, Bryn Yehle, Jennifer Hoffman, Sara Garcia, Ryuka Nagamine, Trevor Briggs, Remy Le Boeuf, Elena Krone, Eileen Farrell, Regan O'Rourke, Elena Roel, Greg Mortimer, Ali Ayoub, Stefani Langehennig, Caitlin Turk, Logan Scmid, Stefan Chavez-Norgaard, Karen Kim, Tatiana Peccedi, Courtney Cassidy, John Sebesta, Rhianna Lewis, Janice Bening-Lacek, Vivian Lawless, Mckenna Hanson, Jeffrey Amidon, Riya Joshi, Ram Ambre, Brady Worrell, Perrin Schneider, Ali Azadani, Brooke Agulnek, Lyndsie Salvagio, Elise Siemanowki, Yan Qin, Andre Allen, Melodie Nguyen, Megan Livengood, Abby Reams, Saffron Hartreeve, Bri Wylie, Sarah Brookman, Mariah Loiacono, Green Russo, Abhia Lodhi, Gabrielle Welsh, Nika Spehar, Shahked Levin, Evrim Baykal, Kimberly Chiew, Jocelyn Torres, Kailey Hicks, Mykaela Tanino-Springsteen, Audrey Bellows, Akam Chahal, Madeline Tepper, Shannon Murphy, Alexa Fonseca, Deborah Han, Cassandra Perez, Oluwatoyin Alaba, Julia Roncoroni, Vy Nguyen, Nana Burn, Sarah Sasse, Rubin Tuder, Anthony Gerber, Nancy Lorenzon, Christine Vohwinkel, Camryn Gunter, Tristan Weber, Sam Rommel, Brian Michel, Muskan Fatima, Alannah Oleson, Kira Frey, Edward Garrido, Beckett Morris, Kerstin Haring, Drew Middleton, Abigail Walpert, Liam Dee, Gabby Ishaw, Cole Carnes, Maddie Weiser, Claire Fox, Valeriia Vlasenko, Kateri Mcrae, Riley Smith, Abigail Templin, Kushani Rajapaksha

DU Undergraduate Research Journal Archive

Abstracts from the DU Undergraduate Research Showcase.

Ankle Dorsiflexion Is A Primary Influence On Single Limb Landing Stability Regardless Of Menstrual Cycle Chase, Olivia Matrulli

Honors Theses

Context: Hormonal fluctuations associated with the menstrual cycle contribute to modifications in joint laxity. Conflicting evidence supports increased ligamentous injury risk and altered postural control in response to these cyclic changes. Objective: To quantify changes in passive joint flexibility and dynamic postural control across the menses and luteal phases of the menstrual cycle. Design: Repeated measures. Setting: Research laboratory. Participants: Thirteen healthy females (20 [1] y, 1.62 [0.06] m, 67.42 [11.75] kg) with a regular menstrual cycle over the last twelve months volunteered. Interventions: Participants performed five static flexibility tests and three single-leg drop landings onto a force plate with …

Structure Of Ergosteryl-Aspartate Synthase Reveals How An Entrapped Trna Is Used Like A Prosthetic Swinging Arm In The Synthesis Of Aminoacylated Sterols, Hanako Murayama, Nathaniel Yakobov, Nassira Mahmoudi, Sasha Legrosdidier, Nicolas Fournier, Solène Zuttion, Kanata Matsumoto, Michihiro Nishimura, Jingwei Ji, Bruno Senger, Laurence Huck, Howard Gamper, Yoshiaki Kise, Ralph Kleiner, Mathieu Frechin, Ya-Ming Hou, Hubert Becker, Yuzuru Itoh, Frédéric Fischer, Osamu Nureki

Department of Biochemistry and Molecular Biology Faculty Papers

Ergosteryl-3β-O-L-aspartate synthase (ErdS) catalyzes tRNA-dependent aspartylation of ergosterol, a lipid essential for fungal cell membrane integrity. However, the functional significance of ergosteryl-aspartate and the molecular mechanisms underlying its synthesis remain unclear. Here, we show that ErdS localization is highly dynamic and that Erg-Asp is required for proper hyphal growth, sporulation, and spore germination, and likely influences stress tolerance. The cryo-electron microscopy structure of ErdS revealed an unprecedented sterol-binding pocket. In addition, the structures in complex with a non-hydrolyzable Asp-N-tRNAAsp show a tRNA-guided intramolecular aminoacyl transfer mechanism between two functional domains of the enzyme. The CCA end of tRNAAsp undergoes a …

Phenotypic Plasticity In A Stochastic Environment: Modeling Three Phenotypes And Environments, Sarah P. Williams, Marissa C. K. Douglas, Stephen C. Adolph

Spora: A Journal of Biomathematics

Phenotypically plastic organisms are capable of adjusting their phenotypes in a variable environment. Padilla and Adolph (1996) modeled this process and included a time lag between detection of an environmental change and the responding change in phenotype. We extended the Padilla and Adolph model from two to three discrete environments and phenotypes and analyzed the model computationally. Our results were consistent with their findings: the fitness advantage of phenotypic plasticity is higher when (1) the lag time is shorter, (2) the probability of environmental change is lower, and (3) the fitness disadvantage of mismatched phenotypes and environments is more severe. …

The Effect Of The Chemical And Microbiological Structure Of Biofilms On The Growth Of Oyster Spats In The Hudson River, June L. Rahman

Student Theses and Dissertations

Eastern oysters (Crassostrea virginica) are sessile suspension feeding bivalves that improve water quality through filtration and reef formation, making them crucial to the health oftheir native ecosystems. Establishing oyster habitats is a priority in Hudson River restoration efforts following significant population declines due to over harvesting, habitat loss, and pollution. Oyster spat production and attachment are influenced by biofilms; however, it is not well known how biofilm properties, such as bacterial taxonomic composition and EPS content, affect oyster larval attachment in the Hudson River. We hypothesized that intertidal surfaces,which are more exposed sunlight, would develop photosynthetic biofilms that enhance oyster …

Long Panel Studies Of Small-Scale Rural Societies In The Global South: What Is Their Value, Why Are They Rare, And Suggestions To Make Them Happen, Jonathan Bauchet, Ricardo Godoy, William R. Leonard, Victoria Reyes-Garcia, Asher Y. Rosinger, Susan Tanner, Eduardo A. Undurraga

Department of Agricultural Economics Faculty Publications

Many topics in the behavioral sciences and epidemiology require researchers to directly observe entities (e.g., individuals, households) over a long time to identify lasting effects. Long-term panel data collection is more common in high-income countries than in small-scale rural societies (SSRS) of low-income countries. SSRS are mobile, nature-dependent, linguistic minorities, and highly autarkic. Analyzing such data using a life-course perspective can help uncover patterns that align or upend what we know from high-income countries. This study a) reviews long (>∼10 year) panels in SSRS (n = 9), b) extends the analysis to cover somewhat comparable societies of smallholders (n …

Planting Oak Seedlings For Forest Regeneration, Ryan Bohannon

Forestry and Natural Resources

Oaks are an important component of forests across the Southeast and are favored for a variety of objectives, including the provision of wildlife habitat and timber. Planting oak seedlings can be an effective practice for promoting successful oak regeneration in managed forests. This publication provides forest landowners and managers with practical recommendations for oak enrichment planting, including species and seedling selection, seedling care, planting techniques, and post-planting practices to promote survival and growth.

Unveiling Immune-Related Gene Signatures In Triple Negative Breast Cancer Through Integrated Transcriptomic Analysis, Priyanga Paranthaman, Ramanathan Karuppasamy, Shanthi Veerappapillai

BioMedicine

Background: Triple-negative breast cancer (TNBC) is an aggressive subtype with limited treatment options and poor prognosis. Understanding the underlying molecular mechanisms, particularly immune-related gene networks, is critical for identifying novel therapeutic targets. Aim: This study aimed to identify immune-related hub genes involved in TNBC progression by integrating microarray and RNA sequencing data. Methods: We integrated microarray and RNA sequencing datasets from five Gene Expression Omnibus (GEO) studies (GSE36295, GSE37751, GSE61724, GSE38959, and GSE58135) to identify differentially expressed genes (DEGs). Protein–protein interaction (PPI) networks were constructed using the STRING database. Key modules and hub genes were identified through network analysis. …

High-Throughput Robotic Ethanol Inhibition Assays For Engineered Thermophilic Biofuel Strains, Kevin He, Daniel Olson, Marybeth Maloney, Anthony Lanahan

Wetterhahn Science Symposium Posters

Ethanol stress assays are commonly used to evaluate microbial tolerance, metabolic adaptation, and fermentation performance. However, manual liquid handling introduces variability across replicate wells and small-volume pipetting steps, limiting reproducibility and throughput. This study developed an automated OT-2 robotic workflow to generate replicated ethanol concentration gradients for high-throughput inhibition assays in engineered thermophilic biofuel strains. Kinetic plate-reader measurements were used to quantify ethanol-dependent growth responses under anaerobic fermentation conditions. The reasearch question is: How do engineered thermophilic biofuel strains differ in ethanol-dependent growth inhibition under anaerobic fermentation conditions, and can automated robotic assays improve the reproducibility of these measurements? Can …

Popgenhelpr: An R Package To Streamline And Facilitate Informed Population Genomic Analyses And Visualization Of Genetic Ancestry, Diversity And Differentiation, Keaka Farleigh, Mason O. Murphy, Christopher Marie Blair, Tereza Jezkova

Publications and Research

Analysing large population genomic datasets requires an interdisciplinary skillset. Beyond a knowledge base in genetics and population biology, population genomic analyses involve computer science and statistics, representing a barrier for researchers without experience in those fields. PopGenHelpR seeks to lower this barrier by enabling researchers to perform population genomic analyses and generate near-publication quality figures in a streamlined and informed fashion. PopGenHelpR allows users to estimate genetic diversity within populations as well as differentiation among populations and individuals from single nucleotide polymorphism data. PopGenHelpR includes commonly used measures such as observed heterozygosity and FST. PopGenHelpR also provides five …

Phytochemical Composition And Bioactivities Of Roselle (Hibiscus Sabdariffa L.) Extracts Obtained By Infusion, Ethanolic Maceration, And Maltodextrin-Assisted Drying, Risna Silvianti, Warsito Warsito, Elok Zubaidah, Zubaidah Ningsih, Aqidatul Izza

Karbala International Journal of Modern Science

Roselle (Hibiscus sabdariffa L.) is rich in phenolic compounds and anthocyanins, but the extraction method may influence its chemical composition and biological activity. This study compared hot-water infusion, ethanolic maceration, and maltodextrin-assisted drying. It aimed to examine the relationship between the extraction method, chemical profile, and bioactivity. The resulting extracts (EI, EM, and EP) were analyzed for total phenolic, flavonoid, and anthocyanin, LC-HRMS profiles, and antioxidant capacity by the FRAP assay. Antibacterial analysis was conducted against Escherichia coli (ATCC 25922) and Staphylococcus aureus (ATCC 25923) using agar well diffusion. Cytotoxicity tests (MTT, 24 h) were performed against HT-29, 4T1, …

Effects Of Warming On Growth And Leaf Colonization By Litter Mat-Forming Fungi In A Wet Tropical Forest In Puerto Rico, Ari E. Puentes, D. Jean Lodge, Deyaneira A. Ortiz-Iglesias, Tatiana Barreto-Vélez, Laura C. Rubio-Lebrón, Hieu Chu, Christine S. O'Connell, Sasha C. Reed, Tana E. Wood

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Wet tropical forests are experiencing rising temperatures and increased frequency and intensity of extreme climatic events, such as cyclones, which can increase rates of soil erosion and surface runoff. Fungal litter mats, formed by agaric decomposer fungi, play a crucial role in stabilizing slopes, preventing erosion, and aiding nutrient cycling; however, little is known about how warming affects litter mat growth and function. We investigated two litter mat-forming fungi, Gymnopus johnstonii and Marasmius aff. crinis-equi, in warmed (+4°C above ambient) and control plots in the Luquillo Experimental Forest, Puerto Rico. Growth and time-to-leaf colonization were monitored over 6 weeks …

The Role Of Media In Enhancing The Awareness Of Jordanian University Students About The Risks Of Energy Drinks, Rasha Salameh, R. Abuhasirah

This article aimed to explore the role of media in enhancing the awareness of Jordanian university students regarding the health risks associated with energy drink consumption. The article employed a media audience survey method, applied to a Quota sample of 300 students from diverse academic disciplines (humanities, health sciences, and natural sciences) at Yarmouk University (public) and Middle East University (private). Data were collected between March 10 and April 15, 2025. The results indicated that energy drink consumption was higher among Middle East University students (55.4%) compared to Yarmouk University students (44.6%). Furthermore, students in the humanities reported higher consumption …