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Evolution Of A Novel Neuronal Sex-Specifically Spliced Gene In Mosquitoes, Yael Norohasimbola Tsitohay

Student Theses and Dissertations

Female mosquitoes from many species require a blood meal from an animal host as a protein source for egg development and successful reproduction. The majority of mosquito species are generalists in their host preference, feeding on a range of animals including mammals, birds, and amphibians. However, a small fraction of mosquito species have evolved a preference for human hosts. These species are mainly found in the genera Aedes, Culex, and Anopheles, and they have created a global health crisis due to their ability to transmit deadly human pathogens including dengue virus, Zika virus, West Nile Virus, and …

The Influence Of Dna Methylation On Both H2a.Z Nucleosome Dynamics And The Zinc Finger And Homeoboxes Transcription Factor Family, Rochelle M. Shih

Student Theses and Dissertations

DNA methylation represents a widespread and heritable modification that exerts substantial influence on chromatin organization and function in many eukaryotic genomes. The presence of DNA methylation has been strongly linked to transcriptional regulation, in both activating as well as repressive ways, though exactly how a small chemical mark can enact such drastic and seemingly opposing effects on gene expression remains an open question. In my thesis work, I describe the influence DNA methylation has on two classes of chromatin proteins, the histone variant H2A.Z and the Zinc Finger and Homeoboxes (ZHX) family of transcription factors. DNA methylation and H2A.Z preferentially …

Structural And Functional Studies Of The Sars-Cov-2 Niran Domain, Gabriel I. Small

Student Theses and Dissertations

The COVID-19 pandemic was a dramatically disruptive event, wreaking devastation across the globe and radically impacting nearly every facet of human life. For the first time, a significant amount of global money and attention was directed at coronavirus (CoV) research, propelling the field to the forefront of biomedical research. This allowed for the rapid development of a suite of vaccines and antivirals targeting SARS-CoV-2 that aided in ameliorating the effects of the pandemic. SARS-CoV-2 was the third CoV zoonosis of the 21st century and is now endemic. Global understanding of the threats posed by CoVs circulating among animals in the …

Toxic Torts Are In Your Blood: An Examination Of Pfas And Tort Liability, Aiden M. Holden

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Abstract

Per- and polyfluoroalkyl substances (PFAS), are a group of chemicals widely manufactured for industrial and commercial applications in the past decade due to their remarkable stability. Despite the “useful” nature of PFAS in various applications, they represent one of the most profound environmental and public health crises of the modern era. The chemical stability of PFAS has made them almost completely resistant to natural degradation, earning them the moniker “forever chemicals.” PFAS forever haunt our plant, contaminating the soil, water, and the blood of approximately 95% of the United States population. As the scale of corporate malfeasance by chemical …

Znf16 Is A Nucleolar-Associated Protein That Regulates Expression Of Rdna And Cancer-Associated Genes, Chelsea L. George, Laura A. Espinoza Quevedo, Jason Paratore, Matthew J. Alcaraz, Arlene P. Levario, Yasir Rahmatallah, Galina V. Glazko, Nathan S. Reyna, Laura Diaz-Martinez

Biology Faculty Scholarship

ZNF16 (also known as HZF1 and KOX9) is a multi-C2H2 zinc finger protein first identified via its expression in human T-cells and shown to have a role in blood cell differentiation. ZNF16 was later shown to be ubiquitously expressed in a variety of fetal and adult tissues, suggesting a broader function. In this study, we confirm the ubiquitous expression of ZNF16 in a variety of cancer and non-cancer cell lines and show that ZNF16 depletion reduces cell viability in all cell lines tested. Furthermore, we show that ZNF16 localizes to the nucleolus in a transcription-dependent manner, interacts with the intergenic …

Toward Interpretable Multi-Omics Multimodal Biomedical Artificial Intelligence, Yanjun Lyu

Computer Science and Engineering Dissertations

The complexity of human disease arises from biological processes that unfold across multiple scales, from molecular variation through cellular function, tissue organisation, brain phenotypes, each of which is associated with distinct measurement modalities, regularities, and characteristic. Contemporary biomedical artificial intelligence has brought the opportunity to reveal the complexity with in; however, its methodological default, in which models are trained on most readily available modality, does not adequately engage with the multi-scale connected structure by which biological meaning is constituted. The research area of multi-omics and multi-modal AI for biomedicine remains at an early exploratory stage, and the work presented in …

Influence Of Microbial Communities And Dilute Heavy Metals In Green Manure On Growth In Lactuca Sativa, Robert Lemay

Student Research Projects

This experiment investigated the effects of a green manure (Lemna minor, common duckweed) grown in varying levels of heavy metals and inoculated with local microbiomes on a crop (Lactuca sativa, volcana lettuce). The growth and health of the duckweeds were measured via root length and biomass, and the health of the lettuce crop was measured via head diameter and biomass.  Two levels of heavy metal concentrations were based on real-world stormwater runoff data to mimic an agricultural environment where accumulation of metals in local water bodies may be absorbed into green manure duckweeds. One microbial treatment and …

Limitations Of Reproductive Manipulation By Bacterial Endosymbionts In A Spider Host, Jordyn D. Proctor

Theses and Dissertations--Entomology

Maternally inherited bacterial endosymbionts are common in arthropods. Many of these bacteria manipulate host reproduction to favor the production of infected females, thereby increasing bacterial prevalence in the host population, even if cost is incurred to the host. However, there are also many factors that may inhibit symbionts’ ability to spread in host populations, including environmental constraints, symbiont-imposed costs on the host, interactions with co-infecting bacteria, or host biology. I explored two aspects of symbiont biology within a spider host, Mermessus fradeorum (Linyphiidae), which has varying combinations of up to five different bacterial endosymbionts in local populations: Rickettsiella, Tisiphia …

Perinatal Inflammation And Oxidative Stress Alter Adult Rat (Rattus Norvegicus) Motor Behavior, Alexander Young

Honors College Theses

Recent evidence in comparative animal models suggests that early life exposure to elevated inflammation (via LPS exposure) and oxidative stress (via acetaminophen exposure) may synergistically interact to alter typical neurodevelopmental trajectories, resulting in lasting effects on both behavior and gut-brain neurochemistry. The current study observed emotional and motor behaviors and collected fecal-boli to measure Tyrosine (TE) levels in male and female Long-Evans (Rattus norvegicus) rats. Subjects were either treated with [1] saline [2] lipopolysaccharide (LPS) to introduce an inflammatory state, [3] acetaminophen (APAP) to introduce oxidative stress, or [4] a dual-hit of both LPS + APAP on postnatal day (PD) …

A Metabolite-Dependent Mechanism By Which Bifidobacterium Animalis Subsp. Lactis Promotes Bacteroides Colonization, Khashayar Shahin, Liang Wang, Zihan He, Bomin Lv, Arya Van Alin, Richard Lo-Man, Hao Wu, Philippe Sansonetti, Jean Marc Collard

Research outputs 2022 to 2026

Prokaryote-prokaryote symbiotic relationships influence interactions within microbial communities, affecting colonization, survival, and organization. Unlike competition, consortium species facilitate growth via metabolite cross-feeding. This study explored interactions between two early human gut colonizers: partially aerotolerant Bifidobacterium spp. and strict anaerobic Bacteroides spp., using omics techniques. Promotion of Bacteroides spp. growth by Bifidobacterium animalis subsp. lactis was demonstrated through co-culture experiments in anaerobic conditions. Metabolomic analysis revealed over 150 unique metabolites present in B. animalis subsp. lactis supernatants are absent in other Bifidobacterium species, including 3-hydroxycapric acid, D-alanyl-D-alanine, 2-isopropylmalic acid, and D-glucose 2-phosphate. These compounds served as nutritional substrates, including carbon and …

A Hybrid Geoid Model For The Perlis Region, Malaysia Based On Cadastral Reference Marks And A Geometric Approach, Muhammad Aiman Haiqal Abdul Malek, Muhammad Faiz Pa’Suya, Ramazan Alpay Abbak, Ami Hassan Md Din, Noorfatekah Talib

Mansoura Engineering Journal

This study presents the development of a high-resolution local geoid model for the Perlis region, Malaysia, using a geometric approach that integrates GNSS-levelling benchmarks with Cadastral Reference Mark (CRM) data. A total of 38 GNSS-levelling benchmarks were used as reference points, while 3,725 CRMs were incorporated to significantly enhance spatial coverage for geoid modelling. Orthometric heights at the CRM points were first determined by transferring heights from the reference benchmarks using gravimetric geoid information. Subsequently, geometric geoid heights were computed from the differences between ellipsoidal and orthometric heights. Five interpolation techniques were evaluated to generate the geometric geoid surface, namely …

An Iterative & Analytical Hybrid Deep Learning Framework For Enhanced Brain Tumor Detection And Segmentation In Mri Video Scans, Swati V. Sakhare

Mansoura Engineering Journal

The critical need for accurate and robust brain tumor detection in MRI video scans is for early diagnosis and treatment planning operations. However, the existing methods suffer from several limitations, such as not being able to capture spatio-temporal features, handling class imbalances, and generalizing across datasets with diverse characteristics. To address these challenges, I propose a hybrid deep learning framework that integrates multiple advanced techniques to enhance the detection and segmentation of brain tumors. My approach starts by using the 3D CNN-LSTM (ResNet3D-LSTM) to extract spatio-temporal feature, which utilizes ResNet3D for spatial detail extraction and LSTM for temporal coherence across …

Elli’S Liquid Flow In A Wavy Channel With Slip Effect, Wall Properties, And Heat Transfer, P. Devaki, Yatin Sood

Mansoura Engineering Journal

The dual behavior of Elli’s fluid motivated us to work on it. The fluid behaves as both Newtonian/ non-Newtonian based on the low and high shear rates, respectively. The paper focused on the flow of Ellis fluid in a peristaltic channel with wall properties and heat transfer. The channel is symmetric in nature, and slip conditions are considered near the elastic walls. The governing equations of the flow are solved analytically using suitable boundary conditions, which yield velocity and temperature functions. The novelty of the paper is to analyze the nature of Newtonian/non-Newtonian fluids under the same conditions so that …

Underwater Image Identification Using Fuzzy Soft Planar Graph, Bhuvaneswari Natarajan Jayakar, Karthick Palanisamy

Mansoura Engineering Journal

High-attribute underwater image segmentation is fundamental to autonomous marine exploration, biodiversity monitoring, and subsea infrastructure inspection. However, underwater environments are inherently stochastic, exhibiting severe light attenuation, chromatic distortion, scattering effects, and noise, all of which significantly degrade image quality and challenge conventional computer vision techniques. Hence, Fuzzy logic which handles uncertainty and imprecision in data and Soft sets which manage parameterized information, are widely applied to underwater image analysis. Fuzzy Soft Planar Graphs (FSPGs) constitute a mathematical framework that integrates fuzzy set theory, soft set theory and planar graph structures for preserving spatial topology. The proposed methodology adopts a hybrid …

Finite Element Analysis Of Multiscale Fgm Plate Using Modified Third Order Shear Deformation Theory, Ravi Kumar, Ajay Kumar

Mansoura Engineering Journal

Present paper aimed to examine the static and dynamic response of a carbon nanotube (CNT) infused multiscale functionally graded (FGM) rectangular plate structure. A third-order shear deformation theory (TSDT) based on Reddy’s formulation with enforcing negligible transverse shear stresses at the outermost surface of the plate, is used. A nine-noded isoparametric element with 13 displacement variables per node is numerically investigated for finite element analysis. Using the Halpin-Tsai and homogeneous equation the elastic behaviour of the final material is obtained. The current result is first checked against a previously published result to validate the present mathematical model. The finite element …

Optimal Design Of Concrete Canal Section For Minimizing Overall Costs Using Artificial Ecosystem Optimization, Aya M. Elkhouly, Hamdy A. El-Ghandour, Tharwat Sarhan, Mahmoud E. Abd-Elmaboud

Mansoura Engineering Journal

The optimal design of concrete-lined canals represents a critical challenge in hydraulic engineering, requiring simultaneous minimization of construction and operational costs while satisfying hydraulic performance constraints. This study presents a novel optimization framework that utilizes the Artificial Ecosystem-based Optimization (AEO) algorithm for determining optimal canal cross-sectional dimensions. The proposed methodology comprehensively considers excavation costs, lining expenses, and water losses due to seepage and evaporation while ensuring hydraulic efficiency through velocity and Froude number constraints. The AEO algorithm mimics natural ecosystem processes through production, consumption, and decomposition phases to efficiently explore the design space and converge to global optima. The framework …

Data Collection Algorithm Based On Regression Analysis, Aiming To Minimize Data Processing Delays In 6g-Enabled Iot Networks, Archana Rajendra Mane, Sachin Vasant Chaudhari

Mansoura Engineering Journal

Researchers are currently investigating 6G wireless communication technologies because they can offer ultra-low latency, high data rates, and smarter network management than 5G. IoT services have spurred the development of cutting-edge technologies such as quantum communications, terahertz (THz), and artificial intelligence (AI), all of which are expected to be included into the subsequent generation of 6G networks. This paper presents a regression-based data collection algorithm for 6G-enabled IoT networks that dynamically prioritizes data through Random Forest regression. With a Mean Absolute Error (MAE) of 0.62 ms and a Root Mean Squared Error (RMSE) of 0.83 ms, the proposed method can …

Teleoperated Mobile Robot For Pesticide Spraying And Greenhouse Navigation: Numerical Analysis, Wessam Atwa, Zakaria Ismail, Mohsen Egela, Mohamed G. Alkalla

Mansoura Engineering Journal

Pesticide spraying in greenhouses is a dangerous process as the operator should wear protective suits and masks against the chemicals, which cause skin and eye irritation, respiratory issues, and even cancer. Other severe conditions involve elevated temperature and humidity in the confined greenhouse atmosphere. Therefore, this article proposes a novel teleoperated mobile robot for pesticide spraying called AMR-BPS to address such issues. It aims to keep the human securely outside during the spraying process. AMR-BPS has a novel design incorporating many innovative mechanisms, such as an extendable spraying boom, independent control of each spraying side, adjustable nozzle angles, and 2D-LiDAR …

Performance Of Foamed Concrete Before And After Fire Conditions: A Review, Poles Bahgat, Mohamed Kohail, A. Fathy, A. Afifi

Mansoura Engineering Journal

Foamed concrete is defined as a type of concrete distinguished by its workability, low density, and insulating properties. It is used as building material. The objective of this review is to discuss the physical and mechanical characteristics and fire sensitivity of foamed concrete. Density influences the strength of concrete. The strength of concrete is between 2 and 3.5 MPa, which increased with the addition of gold mining waste, reaching approximately 35 MPa at optimal replacement levels.  There is a 60-70% reduction in strength for lightweight concrete with a density of 400-1200 kg/m³ compared to conventional concrete. The fire sensitivity of …

Patenting Ai Discoveries In Life Sciences: Overcoming Eligibility, Disclosure, And Inventorship Challenges, Dhohyung Kim, Ryan P. Hiler

IP Theory

The pharmaceutical and biotechnology industries face transformative opportunities through artificial intelligence and machine learning integration. However, these technological advances create distinct patent law complications that traditional drug development does not encounter. This article analyzes three interconnected obstacles: establishing eligible subject matter under 35 U.S.C. § 101, meeting disclosure standards under § 112(a), and determining proper inventorship when AI systems contribute substantially to claimed inventions. Drawing from recent USPTO guidance and Federal Circuit precedent, this analysis offers evidence-based strategies for patent practitioners, research scientists, and business leaders seeking robust intellectual property protection for AI-integrated pharmaceutical innovations.

The Evolution Of California Wildfire Governance Through State Bills, Regulations, And Executive Actions, Cassandra Dawn Blevins

History and Political Science | Senior Theses

California faces an escalating wildfire crisis, driven by climate change, drought, and development in fire-prone areas. Despite decades of scientific research on wildfire behavior and risk reduction, catastrophic fires since 2017 raise a critical question: to what extent have California state laws and policies kept up with the intensifying wildfire crisis? Existing scholarship provides extensive insight into wildfire ecology, land-use planning, fuel management, and community resilience, yet it lacks a comprehensive evaluation of whether California’s legislative, regulatory, and executive actions have adapted in a coordinated and evidence-informed manner. In particular, the literature offers limited analysis of how state laws integrate …

Mapping The Distribution Of The Common House Mosquito (Culex Pipiens) In The City Of Spokane: Mosquito Breeding Sites And Blood Meal Analysis, Oluwapelumi Hannah Sonoiki

EWU Masters Thesis Collection

Mosquitoes in the genus Culex are the primary vectors of West Nile virus (WNv) in the United States, with Culex pipiens and Culex tarsalis serving as the dominant species in Spokane. In urban environments, catch basins and other artificial water bodies that collect stagnant and polluted water provide favorable breeding habitats for Culex pipiens. This study aimed to assess the spatial distribution and seasonal dynamics of Culex larvae in Spokane. We examined 303 randomly selected catch basins in the summer of 2025, and at each site we recorded the presence or absence of water, water depth, and mosquito larval …

Characterization Of The Effects Of Atp On Primary Brainstem Glial Cells, Donovan J. Aardema Faigh

Graduate Theses/Dissertations

Migraine and temporomandibular joint disorder (TMD) are debilitating orofacial pain disorders that negatively impact one’s quality of life. These disorders are characterized by elevated levels of adenosine triphosphate (ATP) and activation of central nervous system glial cells that promote and maintain central sensitization and enhance pain signaling in response to inflammatory stimuli. The goal of my study was to characterize the effects of the pro-inflammatory signaling molecule adenosine triphosphate (ATP) on intracellular calcium levels, mRNA levels, and protein expression in astrocytes, microglia, and oligodendrocytes to better understand the role of ATP in promoting central sensitization. To address this goal, primary …

Small Mammal Communities Within And Land Coverage Around Southwestern Missouri Prairies, Kaitlyn J. Bebensee

Graduate Theses/Dissertations

Land alterations can reduce the amount of suitable habitat necessary for persistence of an associated species. Within such constrained habitats, limited resources may elicit competition, which could cause shifts in abundance and occurrence of species. Missouri prairies have been declining in size, making it imperative to collect reference data on mammal populations within and land use types around remnants. For this study, I trapped small mammals in Southwestern Missouri prairies because they can be indicators of environmental health and can vary in abundance between prairies. I focus on the diet of two dominant small mammals, Peromyscus maniculatus and Microtus ochrogaster …

Genomic Signatures Of Decline And Recovery In An Endangered Bat, Myotis Grisescens, Marxe Altman-Orbach

Graduate Theses/Dissertations

Tremendous population declines may result in the loss of genetic diversity, which can, in turn, lead to reduced adaptive potential, overexpression of deleterious phenotypes, and further population declines. In this way, genetic drift from a severe demographic decline may ultimately lead to an extinction vortex. However, populations that avoid the loss of genetic diversity may remain viable, despite demographic crashes. Therefore, understanding genetic diversity is vital for assessing the conservation status of species that have undergone declines, and can even reflect the effectiveness of management actions. I investigated signatures of genetic bottlenecks in the gray bat (Myotis grisescens), …

Exploring Factors Mediating White-Nose Syndrome In Little Brown Bats, Carly R. Trujillo

Graduate Theses/Dissertations

The little brown bat (Myotis lucifugus) has experienced drastic population declines across North America due to the recent disease white-nose syndrome (WNS). Previous studies have identified putatively adaptive alleles (PAAs) that may give individuals a greater likelihood of survival. However, there could be geographic-specific adaptation, creating different adaptive landscapes. Additionally, there may be energetic trade-offs between disease survival and reproductive output, and it is not clear what the long-term survival outcomes for the species may be as a result. Long-term evolutionary outcomes are unclear because this species has a lifespan exceeding the arrival of WNS and is difficult …

The Effect Of Sex On A-To-I Editing In Skeletal Muscle During Inflammation, Skyler Lee

Graduate Theses/Dissertations

Adenosine-to-inosine (A-to-I) RNA editing is a post-transcriptional mechanism mediated by ADAR enzymes that can alter RNA sequence, protein function, and gene regulation. Because ADAR1 is upregulated during inflammation and plays a critical role in innate immunity, previous studies investigated the effects of acute inflammation on RNA editing in male and female mice. Lipopolysaccharide (LPS) was used to induce inflammation, and RNA editing levels were examined in the heart, brain, and skeletal muscle. While editing levels in the heart and brain remained unchanged, skeletal muscle exhibited tissue- and sex-specific differences in editing. In this thesis, LPS treatment affected selective editing, increasing …

Remediation Impacts Metal Concentrations And Metal Tolerant Bacteria In Soils Of The Missouri Tri-State Mining District, Ophelia R. Pettington

Graduate Theses/Dissertations

After over 100 years of Zn and Pb mining in the Tri-State mining district (TSMD), former mines continue to be sources of metals. Metal contaminated soils can be remediated using plant-microbe interactions. Plants manipulate their microbiome and recruit microbes to increase metal tolerance. Remediating bacteria are site-specific and identifying native microbes can accelerate remediation efforts. Studies relating microbes and metal concentrations in remediated areas in the TSMD are scarce. I collected root and bulk zone soils associated with Andropogon virginicus from remediated and non-remediated sites in Webb City, MO. I used 16S rRNA gene amplicon sequencing to evaluate the bacterial …

The Effects Of Environmental Complexity On Brain Development And Personality Expression In Western Hognose Snakes, Gokulan Nagabaskaran

Theses and Dissertations (Comprehensive)

There is growing interest in snake cognition, personality, and welfare as more snakes are kept as pets, yet little research has been conducted. The effects of enrichment and environmental factors have been well documented in other taxa, and recent evidence suggests that snakes may benefit in similar ways. This dissertation investigated the impact of environmental and social enrichment on personality expression, personality stability, and brain development. Western hognose snakes (Heterodon nasicus) were used as the model species, as they are a popular choice in the pet trade. This allows the research to be readily translatable to husbandry practices of many …

Acid-Base Regulation Mechanisms In The West African Lungfish Protopterus Annectens: An Investigation Into The Role Of The Sodium Proton Exchanger (Nhe), Victor H. Q. Pham-Ho Msc

Theses and Dissertations (Comprehensive)

The lungfish possesses a primitive lung and underdeveloped gills, making use of bimodal respiration. Like other freshwater fishes they must regulate ion- and acid-base equilibrium through active ion uptake (driven by pumps and ion transporters), albeit with challenges due to their underdeveloped gills. My thesis aimed to elucidate the role of the sodium proton exchangers (NHE), encoded by the genes slc9a1/nhe1, slc9a2/nhe2 and slc9a3/nhe3, which are hypothesized to contribute towards acid-base regulation. Pharmacologically, amiloride, a sodium-transport inhibitor, and 5-(N-Ethyl N-isopropyl)-Amiloride (EIPA), an NHE specific inhibitor, affected whole-animal titratable acidity and ammonia fluxes, supporting a physiological function of the NHE. Next, …