Digital Commons Network^™

Contemporary U.S. Anthromes As Defined By Hanpp Regimes, Aishwarya Chandrasekaran, Kat F. Fowler, Christopher Lant

Environment and Society Faculty Publications

The concepts of anthromes and human appropriation of net primary production (HANPP) are both valuable in understanding our human-dominated planet, yet they have never been integrated theoretically or empirically. Here we utilize an extensive county-level dataset on HANPP and its product-level components to derive, through cluster analysis, ten contemporary US anthromes. From highest to lowest density of harvested HANPP, the anthromes are: rainfed corn–soy, dairy fodder, spring wheat–small grain, dryland winter wheat, subtropical soy–cotton, commercial timber, mixed hardwood and pasture, recovered eastern forest, prairie–sagebrush rangeland, and arid and alpine sparse grazing. Expanding to thirteen anthromes maintains these, while bifurcating the …

Potential Innate And Adaptive Roles Played By Γδ T Cells In A Bacterial Immunization Model, Lee Anne Talbot

Seton Hall University Dissertations and Theses (ETDs)

Francisella tularensis is a highly infectious intracellular bacterium and the causative agent of tularemia, with pulmonary infection resulting in severe disease and high mortality if untreated. While protective immunity to F. tularensis has been largely attributed to CD4⁺ T cell–mediated IFN-γ responses, the contribution of γδ T cells to mucosal immunity and vaccine-induced protection remains poorly defined. The objective of this study was to characterize the role of γδ T cells during primary pulmonary infection with F. tularensis live vaccine strain (LVS) and following intranasal immunization with inactivated F. tularensis (iFt) prior to LVS challenge.

Using a murine intranasal infection …

Interpretable Deep Learning Models For Trustworthy Prediction Of Enzyme Functions, Louis Dumontet

UNLV Theses, Dissertations, Professional Papers, and Capstones

Trustworthy prediction of enzyme function from protein sequences remains a central challenge in computational biology, particularly when annotated data are limited, imbalanced, or incomplete. This dissertation develops interpretable deep learning methods for enzyme discovery and enzyme function prediction from amino acid sequences. First, it introduces PEPIC, an interpretable convolutional neural network for substrate-level prediction of hydrolytic plastic-degrading enzymes. Using curated and expanded sequence datasets, PEPIC improved predictive performance over benchmark methods, identified sequence regions aligned with catalytic and substrate-binding residues, and supported the discovery and experimental validation of a previously uncharacterized PET-degrading enzyme. Second, this dissertation investigates the integration of …

Harnessing Mechanobiology Of Resident Stem Cells To Refine Cell Based Therapeutics, Dakota R. Kamm

WUSM Theses and Dissertations – All Programs

Mesenchymal stem cells (MSCs) are resident cells residing with many adult tissues such as adipose tissue and bone marrow that have the potency for multiple lineage differentiation as well as the capacity to secrete a litany of beneficial factors to maintain homeostasis and promote tissue repair. Since 1995, MSCs have been used therapeutically to treat a variety of conditions from osteoarthritis to heart disease to muscle pathologies. Great leaps have been made in improving MSC-based therapies through optimization of culture methods and select enrichment of cellular subpopulations. More recently, the physical microenvironment of tissue in vivo and culture conditions in …

Skin Of Frog And Scale Of Dragon: Nutritional Cues, Life Cycle Kinetics, And Secretome Dynamics In Batrachochytrium Dendrobatidis, Naomi C. Okada

UNLV Theses, Dissertations, Professional Papers, and Capstones

Nearly 50% of amphibian species are at risk of extinction, making them the most threatened group of vertebrates on the planet. A major driver of these declines is the pathogenic chytrid fungus Batrachochytrium dendrobatidis (Bd), which causes the fatal skin disease chytridiomycosis. Since its discovery in the late 1990s, Bd has been directly implicated in the extinction of 90 species of amphibians and the declines of hundreds more. Despite this devastating ecological impact, relatively little is known about its basic cellular biology.

Bd has a multi-stage asexual life cycle consisting of a motile and infectious zoospore, which encysts (into a …

The Competition Between Splicing And 3′ Processing Shapes The Human Transcriptome, Lindsey V. Soles, Shuangyu Li, Liang Liu, Kristianna S.K. Sarkan, Erik G. Alvstad, Lusong Tian, Yoseop Yoon, Marielle Valdez, Ivan Marazzi, Yongsheng Shi

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Eukaryotic pre-mRNA processing steps, including splicing and 3′ processing, are tightly coordinated, yet the underlying mechanisms remain incompletely understood. U1 snRNP has been proposed to inhibit 3′ processing at intronic polyadenylation (IPA) sites through a splicing-independent mechanism termed telescripting. In contrast, we discovered that disrupting splicing by using six different methods—targeting various key components such as U1 snRNP, U2 snRNP, U2AF, and SF3b—activates 3′ processing at thousands of IPA sites. Notably, splicing inhibition, especially of U1 snRNP, induced widespread premature transcription termination within gene bodies through both IPA-coupled and IPA-independent mechanisms. Inhibition of different splicing factors activated overlapping and distinct …

Basics Of Forest Certification: A Primer For Forest Owners, Miah Maye Pormon, Joan U. Ureta, Marzieh Motallebi, Barry Graden

Forestry and Natural Resources

Forest certification promotes sustainable forest management, enhances market access for forest products, and improves ecosystem services. This article addresses forest owners’ hesitations in certifying their forest lands by providing information on the importance and requirements of the three biggest certification systems in the Southern U.S. This study can serve as a resource to raise awareness towards forest certification systems and encourage greater participation among forest landowners.

Care As Method: Sound, Duration, Relation In Contemporary Art Practice, Violet L. White

MFA in Visual Art

Abstract Care as Method: Sound, Duration, and Multispecies Relation in Contemporary Art Practice

This thesis proposes care as a method of artmaking, not a subject, theme, or aesthetic position, but the actual structural logic through which a body of work is built, sustained, and understood. Working at the intersection of ecological art practice and relational aesthetics, it asks what happens when the encounter at the center of the work is not between two people but between species, infrastructures, and histories of use and what obligations that encounter generates.

The argument is developed through six interconnected works: installations, sound compositions, sculptures, …

A Reassessment Of “Tityus” Tenuimanus Banks, 1910, As A Misidentified Leiurus Sp. (Scorpiones: Buthidae), Mohamed Mousaid, Ersen A. Yağmur, Zoe Flores, Alana Rivera, Aziza Lansari, Abdellah Bouazza

Euscorpius

This study re-examines the holotype of “Tityus” tenuimanus Banks, 1910, previously synonymized with Buthus atlantis Pocock, 1889 by Lourenço & Francke (1984). Our results indicate that the specimen is a misidentified representative of Leiurus Ehrenberg, 1828, as it exhibits the diagnostic characters of this genus: the central lateral and posterior median carinae of the carapace fused into a lyre-shaped configuration, and tergites I–II bearing five granular carinae (a character absent in the genus Buthus Leach, 1815). Moreover, the holotype lacks one of the most distinctive characters of the genus Tityus Koch, 1836, namely the presence of a subaculear tubercle. The …

The Risk Of Bpa In B Lymphocyte-Mediated Autoimmunity, Mario J. Palacios

Senior Honors Theses

Autoimmune disorders disproportionately affect females, a bias largely attributed to estrogen's modulation of B lymphocyte development and tolerance. Bisphenol A (BPA), a common plastic monomer, shows estrogenic activity and acts as an endocrine disruptor and epigenetic modifier. This thesis examines how BPA may increase autoimmune risk by mimicking estrogen such that it can excite estrogen receptors which rescue autoreactive B lymphocytes from apoptosis. While direct research linking BPA to B lymphocyte-mediated autoimmunity is limited, understanding BPA’s course of action in B lymphocytes is critical for addressing the rising prevalence of autoimmune diseases and its possible link to the increased and …

Impact Of Land-Use Disturbances On The Composition Of Wetland Plant Communities Across The Conterminous United States, Maya Merchant

Undergraduate Honors Theses

Due to the threat of invasive species on wetland biodiversity, it is critical to assess factors driving their proliferation in wetlands. To address this growing need, this project analyzes relationships between non-native species and known anthropogenic disturbance types associated with increased biological invasions. Using the U.S. EPA’s 2021 National Wetland Condition Assessment, the relationship between non-native species (diversity, richness, and coverage) and surrounding land-use within 500, 1,000, and 3,000-meter buffers was evaluated. To explore patterns across larger spatial scales, mean non-native species diversity, richness, and coverage was calculated at the watershed level and compared to associated percentages of agricultural land …

Co-Designing Sweettexts: An Intake-Driven Sms Intervention To Reduce Free-Sugar Consumption In Preschoolers, Bervelyn Asantewaah Addo

Theses - ALL

Abstract Introduction: As early childhood represents a crucial window for establishing lifelong dietary patterns, excessive intake of sugary foods and beverages during this period may result in long-term adverse health outcomes. Intake levels continue to exceed recommended guidelines, and disparities within and across race and low-income population groups persist. Given these disparities, targeted interventions developed to consider the unique needs, preferences, and cultural differences in diverse population groups are essential to enhance health and well-being. The purpose of this research was to develop the content of the "SweetTexts", a text-message-based intervention to reduce the intake of free sugar among preschool-aged …

Book Review--Luke Kemp’S Goliath’S Curse: The History And Future Of Societal Collapse (2025). Ny: Alfred A. Knopf.

The International Journal of Ecopsychology (IJE)

No abstract provided.

Editorial 12(1), May 2026, Matthew R. Jamnik

The International Journal of Ecopsychology (IJE)

No abstract provided.

Developmental Ecological Psychology Meets Organicist Biology: The Example Of The Ecological Self, Catherine Read

The International Journal of Ecopsychology (IJE)

In this paper we outline an ecological-organicist theoretical framework to understand human development. The ecological approach to development (Developmental Ecological Psychology, DEP) places the organism at the center and has a mutualist theoretical framework with an epistemic foundation in direct perception. While research in this tradition has paid much attention to specific developmental questions at a young age (such as perceptual learning, affordances, and action coordination), less effort has gone into the discussion of theoretical issues of overall development at the level of organism-environment mutuality. Meanwhile in biology, a new emphasis on the organism as an explanatory concept and level …

Ije Table Of Contents 12(1), May 2026, Editorial Board

The International Journal of Ecopsychology (IJE)

No abstract provided.

Scorpions In Brazilian Caves And Other Subterranean Habitats, Jonas E. Gallão, Bruno D, Lenhare, Misael Oliveira-Neto, Maria E. Bichuette

Euscorpius

Arachnids have successfully colonized subterranean environments. Compared to spiders, harvestmen, and pseudoscorpions, scorpions have a moderate number of subterranean species, including troglophiles and troglobites. Among the four families and 184 species and three subspecies of scorpions found in Brazil, three families and at least 33 species and one subspecies have been documented in subterranean habitats. This study presents a faunistic list of scorpion occurrences in caves and other types of subterranean habitats in Brazil, along with distribution maps and an attempt to classify species based on their use of and dependence on subterranean environments.

A Sturdy Future: Mangrove Restoration Against Climate Extremes, Gabriella Marie Siasoco

Student Theses 2015-Present

This paper addresses the impacts of climate change on natural disasters and examines how rehabilitation of mangrove forests in Mesoamerica and the Caribbean can mitigate those effects. Rising ocean and atmospheric temperatures contribute to higher sea levels and more severe hurricanes and tropical storms, characterized by increased frequency, duration, and intensity in peak winds, storm surges, and rainfall. Mangrove ecosystems act as vital buffers against coastal disturbances such as tsunamis and extreme storms, while contributing to climate change mitigation through carbon sequestration. Additionally, they improve water quality by filtering nutrients, preventing eutrophication. Despite their ecological and economic value, mangroves in …

The Genus Nebo Simon, 1878 (Scorpiones: Diplocentridae) In Oman, Graeme Lowe

Euscorpius

No abstract provided.

Green Infrastructure As A Strategy For Revitalizing Old Residential Neighborhoods: Evaluation Of Carbon Footprint And Energy Performance - Case Study Of Heliopolis, Cairo, Ahmad Abouisaadat, Eman Gameel, Shoroq Adel

Mansoura Engineering Journal

This study aims to address the challenge of reducing energy consumption and greenhouse gas (GHG) emissions in urban areas, particularly in aging residential neighborhoods. Despite the benefits of Urban Green Infrastructure (UGI) and residential retrofitting, current research often examines these strategies separately, leaving a gap in understanding their combined impact at the district scale. The research proposes a methodology that integrates GIS-based spatial analysis, Urban Building Energy Modeling (UBEM), and Life Cycle Assessment (LCA) to evaluate the effects of UGI (e.g., green roofs, urban trees) and retrofitting strategies on energy use, CO2 reduction, and urban microclimates. The study will provide …

From Stranger To Self: The Role Of Familiarity In Modulating The N170 And N250 Erp Components, Tabish Gul

Dissertations

This study investigated how varying levels of face familiarity modulate the N170 and N250 event-related potential (ERP) components, two neural markers of face perception and recognition. While the N250 is widely considered familiarity-sensitive, the N170 has traditionally been linked to the structural encoding stage of face perception. However, recent research suggests that face familiarity may also influence N170 amplitude and latency. While most previous studies have compared up to three familiarity levels, the present study examined five levels of familiarity: own face, friend’s face, famous face, experimentally familiar face, and unfamiliar face. Twenty-six participants viewed face images while completing a …

Neuroprotective Effects Of Estradiol And Genistein And Interactions With Aromatase Inhibitions Post Cerebellar Lesion In Male Zebra Finches, Grace E. Thompson, Anthony P. Irovic

Honors Theses

Across vertebrates, peripheral and brain-derived estradiol (E₂) promotes neuroplasticity. After injury, E₂ can be derived locally from testosterone via aromatase (AROM), an enzyme that is upregulated in glia at the site of neural injury. E₂disrupts testicular function and elevates cancer and stroke risk, primarily via binding to estrogen receptor alpha (ER α). Genistein (GEN), a phytoestrogen, is similar to E₂ but binds preferentially to estrogen receptor beta (ER β). It may offer neuroprotection without adverse effects of E₂. We used adult male zebra finches (ZF) to model neuroprotective effects of E_{2 …}

Invasive Macrofungi In The United States: A Mushrooming Crisis, Emily Torres

Student Theses 2015-Present

Globalization has accelerated the spread of invasive species, making them one of the largest contributors to biodiversity loss worldwide. While invasive macrofungi remain largely absent from scientific discourse on invasive species, they represent a growing ecological concern throughout the United States. Invasive macrofungi disrupt forest ecosystems, alter soil communities, and displace native fungi. Beyond these ecological impacts, their presence and establishment profoundly affect human-nature relationships, most notably mushroom foraging and cultivation practices. This paper adopts a multidisciplinary approach to examine the ecological, economic, and anthropogenic impacts of invasive macrofungi in the United States. Chapter 1 provides a quantitative overview of …

Invisible Shipwrecks And Neurological Endangerment: The Trade-Off In Seeking Asylum - Reframing The Neurobiological Cost Of Forced Migration, Eisha Giran

CISLA Senior Integrative Projects

Forced migration along the Spain–Morocco route represents one of the most visible humanitarian crises of the twenty-first century, yet its neurological dimensions remain insufficiently examined. This paper investigates how prolonged displacement and trauma reshape neural systems involved in stress regulation, memory, and emotional processing. It introduces the concept of neurological endangerment, defined as a condition of prolonged and inescapable threat exposure during forced migration in which stress-response systems remain chronically activated, opportunities for recovery are structurally constrained, and cumulative neurobiological risk persists beyond the period of immediate danger.

To address the gap between biological measurement and lived experience, this paper …

Predicting And Decoding Allosteric Binding Sites Using Protein Language Models And Structure-Based Machine Learning: An Energy Landscape-Guided Explainable Ai Framework, Kamila Riedlová, Vít Skrhák, William G. Gatlin, Max Ludwick, Lucas Turano, Marian Novotný, David Hoksza, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

Computational prediction of allosteric binding sites in protein structures remains a persistent challenge, as these regulatory pockets evade detection by both sequence-based and structure-based algorithms. Both computational and physical origins of this predictive asymmetry remain insufficiently understood. In this study, we systematically examine the determinants of binding site predictability using a dual framework that integrates a fine-tuned protein language model and the structure-based method P2Rank as complementary tools probing a diverse data set of 453 human kinases, together with a physics-based interpretability layer derived from energy landscape frustration analysis. Both predictors exhibit a sharp and reproducible dichotomy on protein kinases, …

The Meaning Of Physical Activity In The Context Of Health Sciences: A Concept Analysis, Martín G. Farinola

International Journal of Physical Activity and Health

Physical activity has been defined in numerous ways. Thus, this study aimed to conduct a concept analysis of the existing physical activity definitions in the health sciences literature to evaluate its conceptual precision and assess the need for a revised or novel concept better suited for this domain. The concept analysis was accomplished using tools derived from philosophical semantics. The analysis identified six definitions that explicitly state what physical activity is with sufficient clarity to allow for conceptual examination. The findings indicated that these definitions frequently merge the concept of physical activity with its contextual attributes. To address these semantic …

From Confidence To Competence: Embedding Critical Genai Literacy In Physician Associate Education, Chanceeth Chandrakanthan, Amy H. Donaldson-Perrott Mrs, Jane Secker, Julie Voce, Tamara S. Ritsema

Journal Of Indian Physician Associates

Background: Generative artificial intelligence is now embedded in how many healthcare students learn. Tools provide rapid explanations, summaries and practice questions, but use does not equal AI literacy, particularly where accuracy, medicines safety and guideline alignment matter.

Objective: To describe current use of generative AI by Physician Associate students and outline a practical approach to teaching critical AI literacy.

Methods: Educational evaluation using three activities: (1) baseline survey of students about use and attitudes, (2) an embedded compare and critique session in applied pharmacology where small groups assessed AI answers against trusted UK sources, including BNF and NICE guidance, followed …

A Jobs-To-Be-Done Framework For Mapping Digital Innovation Opportunities In Climate-Smart Agrifood Systems, Lourival Carmo Monaco Neto, Allan Gray

Department of Agricultural Economics Faculty Publications

The agrifood sector faces well-documented barriers to climate-smart agriculture (CSA) adoption, reflecting systematic difficulty identifying where digital tools address specific stakeholder needs rather than a technology shortage. This paper presents a prescriptive framework for mapping digital innovation opportunities in complex, multi-stakeholder agrifood systems. Grounded in Jobs-to-be-Done (JTBD) theory and structured as a two-dimensional matrix of meta-jobs and value chain segments, the framework was developed through a design science research (DSR) paradigm evaluated on utility, coherence, and actionability. Construction involved a purposive synthesis of three literature streams and iterative refinement through 136 stakeholder engagements within a six-month university-affiliated startup studio cycle. …

Food-Form Delivery Of Spore-Forming Probiotics As An Alternative To Gavage In Animal Models, Aubreyona Faith Migliori Skalka

All Graduate Theses and Dissertations, Fall 2023 to Present

Western dietary patterns are characterized by nutrient-poor, calorie-rich diets and have been linked to poor health outcomes and gut inflammation phenotypes. Probiotics are often taken to support gut health, but many beneficial bacteria do not survive transport through the digestive system to produce any effect. Spore-forming bacteria, such as Bacillus coagulans, are more resilient due to their hardy outer coat which aids in survival through many obstacles encountered in the gastrointestinal tract, including acidic stomach conditions. In research studies, probiotics are usually given to mice through a procedure called oral gavage, where a tube is used to deliver the …

The Cobalt Curse: Cobalt’S Role And Risks, Marley Jackowitz

Student Theses 2015-Present

This paper examines the hidden environmental, geopolitical, economic, and social costs of the cobalt supply chain. Fueled by the demand for battery technology and electric vehicles, cobalt has become an essential element to the green energy transition. With the largest share of global cobalt deposits, the Democratic Republic of the Congo bears a disproportionate share of the industry’s harms. Cobalt mining in the DRC is marked by environmentally degrading practices and inhumane working conditions, compromising Congolese health, safety, and well-being. Chapter 1 discusses the environmental impacts of DRC cobalt mining and its adverse effects on public health. Environmentally degrading mining …