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Impacts Of Land Development On Soil Microdiversity And Antibiotic Production, Dennis Guillen Castro, Robert Garcia, Jonathan Castro, Davida Smyth May 2025

Impacts Of Land Development On Soil Microdiversity And Antibiotic Production, Dennis Guillen Castro, Robert Garcia, Jonathan Castro, Davida Smyth

Masters Theses (Archived)

The impact of land development on soil microbial diversity and antibiotic production is critical due to industrial expansion and the scarcity of effective antibiotics. Low Impact Development (LID) aims to preserve ecosystems, but its effectiveness in maintaining microbial diversity is uncertain. This study compares soil samples from nine sites: undisturbed (UD), residential (RD), and Madla Greenway (GW) within the VIDA development area and Texas A&M University-San Antonio campus. Isolated microbes were screened for antibiotic production and genetically characterized. Preliminary findings indicate that UD sites harbor greater microbial abundance, and a higher proportion of antibiotic-producing microbes compared to GW and RD …


Multimodal Spatial Proteomic Profiling In Acute Myeloid Leukemia, Christopher P Ly, Ivo Veletic, Christopher D Pacheco, Enes Dasdemir, Fatima Z Jelloul, Sammy Ferri-Borgogno, Akshay V Basi, Javier A Gomez, Jessica L Root, Patrick K Reville, Sonali Jindal, Sreyashi Basu, Padmanee Sharma, Andres E Quesada, Carlos Bueso-Ramos, Taghi Manshouri, Branko Cuglievan, Miriam Garcia, Jared K Burks, Hussein A Abbas May 2025

Multimodal Spatial Proteomic Profiling In Acute Myeloid Leukemia, Christopher P Ly, Ivo Veletic, Christopher D Pacheco, Enes Dasdemir, Fatima Z Jelloul, Sammy Ferri-Borgogno, Akshay V Basi, Javier A Gomez, Jessica L Root, Patrick K Reville, Sonali Jindal, Sreyashi Basu, Padmanee Sharma, Andres E Quesada, Carlos Bueso-Ramos, Taghi Manshouri, Branko Cuglievan, Miriam Garcia, Jared K Burks, Hussein A Abbas

Faculty, Staff and Student Publications

Acute myeloid leukemia (AML) resides in an immune-rich microenvironment, yet, immune-based therapies have faltered in eliciting durable responses. Bridging this paradox requires a comprehensive understanding of leukemic interactions within the bone marrow microenvironment. We optimized a high-throughput tissue-microarray-based pipeline for high-plex spatial immunofluorescence and mass cytometry imaging on a single slide, capturing immune, tumor, and structural components. Using unbiased clustering on the spatial K function, we unveiled the presence of tertiary lymphoid-like aggregates in bone marrow, which we validated using spatial transcriptomics and an independent proteomics approach. We then found validated TLS signatures predictive of outcomes in AML using an …


Sustainability In The Cruising Industry: Innovations In Air Quality, Energy Efficiency, And Waste Management, Fikret Durmus, Mi Ran Kim May 2025

Sustainability In The Cruising Industry: Innovations In Air Quality, Energy Efficiency, And Waste Management, Fikret Durmus, Mi Ran Kim

ICHRIE Research Reports

The cruise industry, a cornerstone of the global hospitality and tourism sector, faces increasing scrutiny over its environmental impact. As passenger numbers grow, so does the industry's responsibility to adopt sustainable practices. This report examines key innovations in air quality management, energy efficiency, and waste management, highlighting the industry's transition from historically high emissions and waste production to advanced sustainability initiatives. Key focus areas include evolving maritime regulations, adopting cleaner propulsion technologies, integrating energy-efficient solutions, and improving waste treatment practices. Findings indicate that industry leaders are investing in liquefied natural gas engines, exhaust gas cleaning systems, and onshore power supply …


Engineering Hiv-1 Env Protein To Elucidate In Situ Structural Dynamics Of Env, Narendra Kumar Gonepudi May 2025

Engineering Hiv-1 Env Protein To Elucidate In Situ Structural Dynamics Of Env, Narendra Kumar Gonepudi

Biotechnology Theses

The HIV-1 Envelope (Env) glycoprotein trimers undergo structural changes upon interacting with host receptor CD4 and coreceptors (CCR5/CXCR4) for virus entry. As the only surface-exposed viral protein, Env is a key antibody target but evades recognition through structural changes. Studying Env dynamics with respect to the coreceptor binding region (V3 loop) provides insights into virus entry and immune evasion. Fluorescence labeling via genetic code expansion (amber–TAG suppression) offers a minimally invasive approach for fluorescence microscope-based Env dynamics studies. Here, two V3-related dual-amber Env constructs (A135TAG-P308TAG, P308TAG-E395TAG) were generated by incorporating two non-canonical …


Lethal And Sublethal Effects Of Cotton Expressing Single And Pyramided Proteins Of Bacillus Thuringiensis (Bt) On Helicoverpa Armigera (Lepidoptera: Noctuidae), Spodoptera Litura (Lepidoptera: Noctuidae), And Spodoptera Frugiperda (Lepidoptera: Noctuidae), Sharna Holman, Paul Grundy, Helen Spafford, Michael Furlong May 2025

Lethal And Sublethal Effects Of Cotton Expressing Single And Pyramided Proteins Of Bacillus Thuringiensis (Bt) On Helicoverpa Armigera (Lepidoptera: Noctuidae), Spodoptera Litura (Lepidoptera: Noctuidae), And Spodoptera Frugiperda (Lepidoptera: Noctuidae), Sharna Holman, Paul Grundy, Helen Spafford, Michael Furlong

Grain and Other Field Crops Research Articles

The susceptibility to proteins from Bacillus thuringiensis (Bt) can vary among lepidopteran pest species. While Bollgard 3 cotton (BG3) effectively controls the primary pest Helicoverpa armigera (Hübner) in Australia, its effectiveness against other pests, such as Spodoptera litura (Fabricius) and Spodoptera frugiperda (J. E. Smith), is unknown. This laboratory study assessed the survival and development of H. armigera, S. litura, and S. frugiperda larvae when fed foliage from a non-transgenic cotton variety (CC) and 3 transgenic cotton varieties: Bollgard (BG1) expressing Cry1Ac, Bollgard II (BG2) expressing Cry1Ac and Cry2Ab, and Bollgard 3 (BG3) expressing Cry1Ac, Cry2Ab, and Vip3A. Pyramided …


Myocardin Effector Proteins Affect Tgf-Beta-Induced Myofibroblast Differentiation In Ipf Cells, Allison Gonzalez May 2025

Myocardin Effector Proteins Affect Tgf-Beta-Induced Myofibroblast Differentiation In Ipf Cells, Allison Gonzalez

Biotechnology Theses

Idiopathic pulmonary fibrosis (IPF) is an incurable interstitial lung disease defined by the progressive, irreversible scarring of the tissues between the lung’s alveoli. To date, only two drugs have received approval for treatment. However, these medications are not considered cures since they do not stop the progression of the disease. A deeper understanding of the mechanisms underlying IPF could aid in discovering a cure. We recently found that myocardin (MyoCD) regulates SMAD2/3 transcription factors in the TGF-β signaling pathway and governs the genes involved in pleural fibrosis. However, it is unclear whether MyoCD plays a critical role in IPF by …


Application Of Bioinformatic Tools To Tuberculosis Surveillance At The Arkansas Department Of Health, Brian Scott Delavan May 2025

Application Of Bioinformatic Tools To Tuberculosis Surveillance At The Arkansas Department Of Health, Brian Scott Delavan

Theses and Dissertations

Tuberculosis (TB) remains a public health threat in Arkansas. Great strides have been made over the past fifty years to reduce the number of TB cases in Arkansas. However, the rate of TB cases has remained steady since 2010. According to the Arkansas Department of Health, from 2012 through 2023 the TB Case rate per 100,00 population was between 2.0 and 3.1. To continue Arkansas’ drive towards elimination of TB in Arkansas, defined as one TB case per million residents, new data analysis tools are needed. This project employs multiple bioinformatic tools to analyze TB cases and latent tuberculosis infections …


Sequence Conservation Of Suppressor Of Ikk Epsilon Phosphorylation Sites, Kaydence M. Isaacs May 2025

Sequence Conservation Of Suppressor Of Ikk Epsilon Phosphorylation Sites, Kaydence M. Isaacs

Undergraduate Honors Theses

Suppressor of IKK epsilon (SIKE) is a protein that is implicated in immune response signaling pathways. SIKE interaction networks suggest roles in cell motility and macromolecular complexes mediating kinase/phosphatase activity. In this project, we aim to better understand the function of SIKE by analyzing amino acid sequences across different species. In human SIKE, viral infection leads to phosphorylation of SIKE at defined serine residues. Comparing SIKE sequences, and specifically these phosphorylation sites, allows us to discover its ancestral connections to innate immune function. This has particular applications in bridging the evolutionary gap between fungi and metazoa SIKE sequences. Multiple sequence …


Transcriptome Analysis Reveals Nutrient Deprivation Reduces Nitrate Content In Lettuce (Lactuca Sativa Var. Ramosa Hort.) And Enhances Nitrogen Metabolism, Yingying Zhang, Xuena Liu, Shikai La, Mingjiao Wang, Xu Hu, Ainoug Shi, Jinghuai Guo, Lingdi Dong May 2025

Transcriptome Analysis Reveals Nutrient Deprivation Reduces Nitrate Content In Lettuce (Lactuca Sativa Var. Ramosa Hort.) And Enhances Nitrogen Metabolism, Yingying Zhang, Xuena Liu, Shikai La, Mingjiao Wang, Xu Hu, Ainoug Shi, Jinghuai Guo, Lingdi Dong

Horticulture Faculty Publications and Presentations

Introduction Excessive nitrate accumulation in leafy vegetables poses health risks and indicates inefficient nitrogen use in conventional agriculture. While nitrogen metabolism has been extensively studied, the molecular mechanisms linking nutrient deprivation to nitrate reduction in vegetables remain unclear. Methods In this study, we investigated these mechanisms in lettuce (Lactuca sativa var. ramosa Hort.) by analyzing nitrate content and gene expression in leaves and roots under nutrient deprivation. Results After five days of treatment, nitrate content decreased by 57.49% in leaves and 50.77% in roots. Transcriptome sequencing identified 323 and 3,494 differentially expressed genes (DEGs) in leaves and roots, respectively, with …


Mate Choice And Movement Ecology Of Plegadis Ibis In Louisiana, Ryan T. Klutts May 2025

Mate Choice And Movement Ecology Of Plegadis Ibis In Louisiana, Ryan T. Klutts

LSU Master's Theses

In 1817, George Ord documented the first North American records of Glossy Ibis (Plegadis falcinellus), a species native to the Old World. Over the next 200 years, Glossy Ibis expanded its breeding range to include the Atlantic coast to southernmost Florida and thence up the Gulf coast to eastern Texas. Forty-five to 75 years ago, its range expansion brought it into secondary contact with White-faced Ibis (P. chihi) in Louisiana, a native species whose breeding range includes freshwater wetlands in Louisiana and eastern Texas. Hybridization between the two species resulted in a large hybrid zone in southern Louisiana, providing an …


Development And Evaluation Of A Simple Human Body Link Model Considering The Degrees-Of-Freedom Of Shoulders, Mizuki Takeda, Yuki Saito, Kaiji Sato May 2025

Development And Evaluation Of A Simple Human Body Link Model Considering The Degrees-Of-Freedom Of Shoulders, Mizuki Takeda, Yuki Saito, Kaiji Sato

Progress in Scale Modeling, an International Journal

Modeling of the human body is widely utilized in the field of human–robot interaction, warranting the development of a simple model to measure and recognize the human body movements. To this end, a two-dimensional (2D) human body link model in the sagittal plane has been used to represent the human body with rotating joints and links connecting these joints. The joint positions can be determined by using the coordinates of a limited number of points on the links and estimated using a few sensor outputs when the links are of constant length. However, models with constant link lengths may result …


An Examination Of The Effect Of Cloth Material On The Efficiency And Success Of Tick Dragging Protocol In Lynchburg Va., Hyden Draughon May 2025

An Examination Of The Effect Of Cloth Material On The Efficiency And Success Of Tick Dragging Protocol In Lynchburg Va., Hyden Draughon

Undergraduate Theses and Capstone Projects

Ticks serve as a major vector of arthropod-borne pathogens that could affect human populations. Ixodes scapularis, Amblyomma americanum, Dermacentor variabilis, and Haemaphysalis longicornis populations have been commonly reported in the state of Virginia, and can carry pathogens potentially fatal to humans. I. scapularis serves as a vector of Borrelia burgdorferi (the bacterium that causes Lyme disease), A. americanum has been found to carry Ehrlichia chaffeensis (the bacterium that causes Human Monocytic Ehrlichiosis), D. variabilis can carry Rickettsia rickettsii (the bacterium that causes Rocky Mountain Spotted Fever), and H. longicornis has been found to transmit protozoan Theileria orientalis to livestock. Over …


Pollinator Plant Communities Within Restored Montane Longleaf Pine Ecosystems, Hanen Van Rossem May 2025

Pollinator Plant Communities Within Restored Montane Longleaf Pine Ecosystems, Hanen Van Rossem

Master's Theses

Historically the fire-dependent and biodiverse longleaf pine (Pinus palustris) ecosystem was the dominant ecosystem of the Southeastern US. This ecosystem’s range was massively reduced due to land conversion and fire exclusion, causing the decline of many native species. Efforts to restore and protect longleaf pine stands are now ongoing with the goal of expanding habitat and refuge for threatened species. Differences in restoration practices and prior land use may influence the extent to which restored habitat patches can support pollinators and their plants. This study compared pollinator plant biodiversity between restored neighboring montane longleaf pine stands that differed in …


Oviposition And Immature Development Of Blowflies In Forensic Investigations, Amalia Herrera-Benitez May 2025

Oviposition And Immature Development Of Blowflies In Forensic Investigations, Amalia Herrera-Benitez

Themis: Research Journal of Justice Studies and Forensic Science

Forensic entomology is a subspecialty within the field of forensic science where insect evidence is analyzed to solve criminal cases. Insects begin to colonize the body, with blowflies being the first insects to arrive. Within minutes, blowflies can lay eggs on a decomposing body, and the larvae will feed once they hatch. The life cycles of blowflies are analyzed to help determine an estimated post-mortem interval (PMI), which is crucial in investigations, as it can help establish a timeline. Various factors, such as temperature and access to the body, can cause delays in the oviposition of blowflies. A delay in …


Observing The Prevalence Of Wolbachia Found In Tick Species From The Central Virginia Region, Madison Hoover May 2025

Observing The Prevalence Of Wolbachia Found In Tick Species From The Central Virginia Region, Madison Hoover

Undergraduate Theses and Capstone Projects

Research has found that ticks are considered the second highest global vector of disease. Ticks can serve as a vector for pathogens such as Rickettsia rickettsii (Rocky Mountain Spotted Fever), Borrelia burgdorferi (Lyme Disease), Borrelia miyamotoi (B. miyamotoi disease) and Borrelia hermsii (tick-borne relapsing fever). Tick species such as Dermacentor variabilis (American Dog ticks), Amblyomma maculatum (Gulf Coast ticks), Amblyomma americanum (Lone Star ticks), Ixodes scapulari (Black legged ticks), and Ixodes affinis can be found within the southeastern Virginia region. Arthropod hosts that possess Wolbachia can have their reproduction negatively impacted through methods such as Parthenogenesis, Male Killing, Feminization, and …


A Phylogenomic Investigation Of The Historical Biogeography Of Livebearers (Cyprinodontiformes: Poeciliidae), Sheila Rodríguez Machado May 2025

A Phylogenomic Investigation Of The Historical Biogeography Of Livebearers (Cyprinodontiformes: Poeciliidae), Sheila Rodríguez Machado

LSU Doctoral Dissertations

The Neotropics contain several biodiversity hotspots and harbor the highest diversity of freshwater fishes globally. Yet, recognizing the patterns and processes driving this richness remains a challenge. Similarly, all groups and subregions have not received the same attention, especially in the genomics era. Addressing these knowledge gaps will help us to better understand the region’s evolutionary and biogeographic complexity. The goal of this dissertation is to examine phylogenetic and biogeographic patterns of Neotropical freshwater fishes, with emphasis on the Greater Antilles, across multiple taxonomic and geographic scales. To achieve this goal, I generated a genomic dataset of hundreds of ultraconserved …


A Floristic Study Of The Vascular Flora Of The Brokeoff Mountains, Southcentral New Mexico, Bryana L. Olmeda, Harpo Faust, Hannah E. Marx May 2025

A Floristic Study Of The Vascular Flora Of The Brokeoff Mountains, Southcentral New Mexico, Bryana L. Olmeda, Harpo Faust, Hannah E. Marx

Biology ETDs

The vascular flora detailed here describes 438 km2 (169 mi2) of the Brokeoff Mountains of southeastern New Mexico. The Brokeoffs are part of the northern extent of the Chihuahuan Desert, the largest desert in North America and one of the ecoregions least represented in botanical collections. Prior to 2023, only 254 plant collections were known from the study site, representing roughly 1.5 collections per 2.59 km2 (1 mi2), despite strong research interest in its neighboring Guadalupe Mountains. Over two field seasons, 1920 plant collections were made, over 81 days of field work conducted, in …


Causes Of Heterozygosity Excess: The Case Of Mexican Populations Of Populus Tremuloides, Javier Hernández-Velasco, José Ciro Hernández-Díaz, Sergio Leonel Simental-Rodríguez, Juan P. Jaramillo-Correa, David S. Gernandt, José Jesús Vargas-Hernández, Ilga Porth, Roos Goessen, M. Socorro Gonzáles-Elizondo, Matthias Fladung, Cuauhtémoc Sáenz-Romero, José Guadalupe Martínez-Ávalos, Artemio Carrillo-Parra, Eduardo Mendoza-Maya, Arnulfo Blanco-García, Christian Wehenkel May 2025

Causes Of Heterozygosity Excess: The Case Of Mexican Populations Of Populus Tremuloides, Javier Hernández-Velasco, José Ciro Hernández-Díaz, Sergio Leonel Simental-Rodríguez, Juan P. Jaramillo-Correa, David S. Gernandt, José Jesús Vargas-Hernández, Ilga Porth, Roos Goessen, M. Socorro Gonzáles-Elizondo, Matthias Fladung, Cuauhtémoc Sáenz-Romero, José Guadalupe Martínez-Ávalos, Artemio Carrillo-Parra, Eduardo Mendoza-Maya, Arnulfo Blanco-García, Christian Wehenkel

Aspen Bibliography

The presence of heterozygous individuals in a population is crucial for maintaining genetic diversity, which can positively affect fitness and adaptability to environmental changes. While inbreeding generally reduces the proportion of heterozygous individuals in a population, polyploidy tends to increase the proportion. North American Populus tremuloides is one of the most widely distributed and ecologically important tree species in the Northern Hemisphere. However, genetic variation in Mexican populations of P. tremuloides, including the genetic signatures of their adaptation to a variety of environments, remains largely uncharacterized. The aim of this study was to analyze how inbreeding coefficient (F …


Computational Identification Of Infiltrating T Lymphocytes Into Solid Tumor, Lin Zhong May 2025

Computational Identification Of Infiltrating T Lymphocytes Into Solid Tumor, Lin Zhong

Statistical Science Theses and Dissertations

T cells play a central role in cancer immunity. Successful anti-tumor immunotherapy relies on the effective infiltration of cytotoxic T cells. However, the tumor microenvironment presents physical and immunosuppressive barriers to prevent T cell entry. Here, we developed two novel computational tools, ReMITT and SIBERT, to search for migrating T cells and T cell entry regions (TERs) into the tumor core. SIBERT combines a novel change point detection method and a spatial imputation model to detect regions with signatures of recent T cell entry using the spatial transcriptomics data. Applying SIBERT to multiple human cancer samples revealed several TERs for …


Assessing The Efficiency Of Methotrexate (Mtx) As An Antiviral Drug Against Gammaherpes Virus Replication, Yennifer A. Gaspar Garcia May 2025

Assessing The Efficiency Of Methotrexate (Mtx) As An Antiviral Drug Against Gammaherpes Virus Replication, Yennifer A. Gaspar Garcia

Honors Projects

It is estimated that ~15% of all cancers are caused by oncogenic virus infections. Two of the top seven cancer-causing human viruses are members of the gammaherpesvirus family: Epstein Barr Virus (EBV) and Kaposi’s Sarcoma Herpesvirus (KSHV). Our lab uses Murine Herpesvirus 68 (MHV-68), a mouse gammaherpesvirus with shares significant genetic homology to KSHV and EBV, as a model system to understand how gammaherpesviruses alter the metabolism of their host during lytic infection to promote their replication. We recently metabolically profiled MHV-68 infected host cells at various time points during the lytic infectious cycle. Our data showed nucleotide metabolism is …


Sex, Skulls, And Selection: An Exploration Of Blakely Island's Deer Population And Their Ecology Through Genetic Sex Differentiation Of Juvenile Crania, Blair P. Graves May 2025

Sex, Skulls, And Selection: An Exploration Of Blakely Island's Deer Population And Their Ecology Through Genetic Sex Differentiation Of Juvenile Crania, Blair P. Graves

Honors Projects

As an isolated landmass with no natural predators, Blakely Island serves as an effective study site for the study of evolutionary factors relating to insular populations of large mammals. A disparity in the adult sex ratio of local deer has been observed, but the demographics of juveniles must still be ascertained through genetic methods. This study aims to further research concerning the development of a replicable and non-toxic procedure through which undergraduate students can identify the sex of numerous juvenile deer crania. Specifically, differing decalcification lengths, DNA extraction kit methods, and amelogenin primer sets were evaluated for relative success in …


Endophenotype-Informed Association Analyses For Liver Fat Accumulation And Metabolic Dysfunction In The Fels Longitudinal Study, Ariana L. Garza, John Blangero, Miryoung Lee, Cici X. Bauer, Stefan A. Czerwinski, Audrey Choh May 2025

Endophenotype-Informed Association Analyses For Liver Fat Accumulation And Metabolic Dysfunction In The Fels Longitudinal Study, Ariana L. Garza, John Blangero, Miryoung Lee, Cici X. Bauer, Stefan A. Czerwinski, Audrey Choh

School of Medicine Publications

The identification of causal genomic regions for liver fat accumulation in the context of metabolic dysfunction remains a challenging goal. This study aimed to identify potential endophenotypes for liver fat content and employ them in bivariate linkage searches for pleiotropic genetic regions where targeted association analysis is more likely to reveal significant variants. Multiple metabolic risk and adiposity distribution traits were assessed using the endophenotype ranking value. The top-ranked endophenotypes were then used in a bivariate linkage analysis, paired with liver fat content. Quantitative trait loci (QTLs) identified as significant or suggestive were targeted for measured genotype association analyses. The …


Neoadjuvant With Low-Dose Radiotherapy, Tislelizumab, Albumin-Bound Paclitaxel, And Cisplatin For Resectable Locally Advanced Head And Neck Squamous Cell Carcinoma: Phase Ii Single-Arm Trial, Zhigang Liu, Dong Wang, Guanjun Li, Muhua Yi, Zhaoyuan Zhang, Guihua Zhong, Liangfu Xu, Rong Jiang, Yannan Zheng, Linxuan Huang, Yingpeng Peng, Lizhong Liang, Jianpeng Li, Ye Liu, Jun Lai, Xianjuan Lv, Yongqiang Xu, Qiaodan Liu, Zhiqiang Wang, Zhutian Liu, Qinan Yang, Li Nie, Jiao Lei, Xiaotao Huang, Zhijie Liu, Wen Jiang May 2025

Neoadjuvant With Low-Dose Radiotherapy, Tislelizumab, Albumin-Bound Paclitaxel, And Cisplatin For Resectable Locally Advanced Head And Neck Squamous Cell Carcinoma: Phase Ii Single-Arm Trial, Zhigang Liu, Dong Wang, Guanjun Li, Muhua Yi, Zhaoyuan Zhang, Guihua Zhong, Liangfu Xu, Rong Jiang, Yannan Zheng, Linxuan Huang, Yingpeng Peng, Lizhong Liang, Jianpeng Li, Ye Liu, Jun Lai, Xianjuan Lv, Yongqiang Xu, Qiaodan Liu, Zhiqiang Wang, Zhutian Liu, Qinan Yang, Li Nie, Jiao Lei, Xiaotao Huang, Zhijie Liu, Wen Jiang

Faculty, Staff and Student Publications

Although pathological complete response (pCR) and major pathological response (MPR) rates of neoadjuvant immunotherapy combined with chemotherapy in head and neck squamous cell carcinoma (HNSCC) trials remain suboptimal, emerging evidence highlights the synergistic potential of combining low-dose radiotherapy with immunotherapy to promote the efficacy of immunotherapy. This phase II, open-label, single-arm, multicenter trial (NCT05343325) enrolled 28 patients with untreated stage III-IVB HNSCC (NeoRTPC02). Patients received neoadjuvant low-dose radiotherapy, the programmed death-1 (PD-1) inhibitor tislelizumab, albumin-bound paclitaxel, and cisplatin for two cycles, followed by radical resection ~4 weeks after treatment completion. The primary endpoint, pCR rate, was achieved in 14 of …


Diagnostic And Clinical Utility Of Oncoscan Microarray And Ngs-Based Sequencing In Pediatric Solid Tumors: Children’S Mercy Hospital’S Experience, Aravindh Nagarajan, Lisa Lansdon, Midhat Farooqi, Lei Zhang, Elena Repnikova May 2025

Diagnostic And Clinical Utility Of Oncoscan Microarray And Ngs-Based Sequencing In Pediatric Solid Tumors: Children’S Mercy Hospital’S Experience, Aravindh Nagarajan, Lisa Lansdon, Midhat Farooqi, Lei Zhang, Elena Repnikova

Research Days

This papers attempts to evaluate the diagnostic and clinical utility of microarray-based OS+ in detecting clinically relevant genetic alterations in FFPE solid tumor samples and to compare the yield of somatic mutation detection by WGS/WES in pediatric solid tumors at Children’s Mercy Hospital - Kansas City.


Variability In Methotrexate Metabolites In A Cohort Of Jia Patients, Nuria Lara Castillo, Mara Becker, Marc Sudman, Susan Thompson, Laura Ramsey May 2025

Variability In Methotrexate Metabolites In A Cohort Of Jia Patients, Nuria Lara Castillo, Mara Becker, Marc Sudman, Susan Thompson, Laura Ramsey

Research Days

Background: Methotrexate (MTX) is the cornerstone disease-modifying anti-rheumatic drug for the treatment of Juvenile Idiopathic Arthritis (JIA). While most patients receiving MTX have a favorable outcome, approximately 30% do not respond, and several experience toxic events, suggesting interindividual difference. Furthermore, evaluation of MTX response takes several months, with the risk of missing the early “window of opportunity” for treatment. Predicting MTX response prior to administration would greatly benefit these patients and their treating physicians by saving valuable time during the early stages of the disease onset. MTX is a folate antagonist and, similar to folate, it undergoes polyglutamation inside the …


Phyllopalpus Pulchellus Uhler, The Handsome Trig (Orthoptera: Gryllidae), A Confirmed Michigan Resident, Mark F. O'Brien, Julie A. Craves May 2025

Phyllopalpus Pulchellus Uhler, The Handsome Trig (Orthoptera: Gryllidae), A Confirmed Michigan Resident, Mark F. O'Brien, Julie A. Craves

The Great Lakes Entomologist

[excerpt]

Phyllopalpus pulchellus Uhler is a member of the Trigonidiinae, also called trigs, sword-tail crickets (Capinera et al. 2004), or more informally, bush crickets; the common name is the Handsome Trig or Red-headed Bush Cricket. The distinctive features of this small cricket (less than 15 mm)—the large black palps, light yellow legs, shiny black wings, and red pronotum and head—are not seen in any other crickets within its range. The Handsome Trig can be found throughout much of the U.S. east of extreme east Texas and south of approximately 41.5° latitude, just south of the Michigan state border (Walker 2003).


Assessing The Contribution Of Geography And Host Use To Genetic Structure In New York Populations Of The Parasitoid Wasp, Aphidius Ervi, Haley J. Plasman, David M. Althoff May 2025

Assessing The Contribution Of Geography And Host Use To Genetic Structure In New York Populations Of The Parasitoid Wasp, Aphidius Ervi, Haley J. Plasman, David M. Althoff

The Great Lakes Entomologist

Host-associated differentiation (HAD) been proposed as a general mechanism for differentiation of many groups of parasitic organisms including plant-feeding insects and their natural enemies. In particular, parasitoid wasps that attack herbivorous insects have many life habits similar to other parasitic taxa, suggesting that HAD also may be important in differentiation. We tested for the population genetic signature of HAD in a parasitoid wasp, Aphidius ervi (Haliday), a biocontrol agent that uses many species of aphids throughout Europe, but is mainly limited to the clover and alfalfa host-races of the pea aphid Acyrthosiphon pisum (Harris) in North America. We assessed allelic …


Sirex Nigricornis (Hymenoptera: Siricidae) Oviposition Preference And Development In Relation To Host Age, And A Novel Live-Trapping System For Wood-Borers, Jessica A. Hartshorn, Larry D. Galligan, Ace J.W. Lynn-Miller, Fred M. Stephen May 2025

Sirex Nigricornis (Hymenoptera: Siricidae) Oviposition Preference And Development In Relation To Host Age, And A Novel Live-Trapping System For Wood-Borers, Jessica A. Hartshorn, Larry D. Galligan, Ace J.W. Lynn-Miller, Fred M. Stephen

The Great Lakes Entomologist

Sirex nigricornis F. (Hymenoptera: Siricidae) is a pine-inhabiting woodwasp native to eastern North America. A non-native congener, S. noctilio F., was discovered along the southeastern shore of Lake Ontario in New York in 2004 and its current distribution now includes seven northeastern states, Ontario, and Quebec. Its discovery led to a sharp increase in research focusing on S. noctilio as well as S. nigricornis. Research on these two species, and their associates, requires efficient methods for field collection and laboratory rearing. Success of these programs relies on successful collection of, and oviposition by, live females in artificial conditions. Moisture content …


Gallery Characteristics And Life History Of The Ambrosia Beetle Anisandrus Obesus (Coleoptera: Curculionidae: Scolytinae) In Big Tooth Aspen, Steven Cassar, Richard Roeper, Robert Beck, Todd Pomeroy, Mark Bruce May 2025

Gallery Characteristics And Life History Of The Ambrosia Beetle Anisandrus Obesus (Coleoptera: Curculionidae: Scolytinae) In Big Tooth Aspen, Steven Cassar, Richard Roeper, Robert Beck, Todd Pomeroy, Mark Bruce

The Great Lakes Entomologist

Anisandrus obesus LeConte constructs entrance holes uniformly over the surface of Big Tooth Aspen (Populus grandidenta Michx.) in April each year. An individual female bores a single entrance tunnel about 7 mm into the sapwood and then two lateral tunnels parallel to the surface. After symbiotic fungal growth, eggs are laid along the gallery walls by May. Three larval instars consume the beetle’s symbiotic fungus and do not expand the gallery. Pupae develop through June with progeny adults appearing by mid-July. Progeny sex ratio of approximately 6 females to 1 male was observed. Progeny adults overwinter within the parental gallery; …


Attraction Of Diabrotica Barberi Smith And Lawrence (Coleoptera: Chrysomelidae) To Eugenol-Baited Traps In Soybean, Louis S. Hesler May 2025

Attraction Of Diabrotica Barberi Smith And Lawrence (Coleoptera: Chrysomelidae) To Eugenol-Baited Traps In Soybean, Louis S. Hesler

The Great Lakes Entomologist

Diabrotica barberi Smith and Lawrence (the northern corn rootworm) is a native North American leaf beetle and a major pest of corn. However, adult D. barberi forage in various habitats outside of corn fields, including soybean, roadside vegetation, and prairie. Eugenol is a common floral volatile that has been shown to increase trap catch of D. barberi within corn and prairie habitat. This paper documents the first report of increased catch of D. barberi on eugenol- baited traps in soybean fields. In two successive tests, catch of D. barberi was increased eight-fold or more by baiting traps with eugenol compared …