Open Access. Powered by Scholars. Published by Universities.®
- Institution
-
- University of Nebraska - Lincoln (20071)
- University of Kentucky (12840)
- Utah State University (8516)
- The Texas Medical Center Library (6975)
- TÜBİTAK (5932)
-
- University of Arkansas, Fayetteville (3705)
- Brigham Young University (3127)
- Old Dominion University (2875)
- Department of Primary Industries and Regional Development, Western Australia (2115)
- City University of New York (CUNY) (2107)
- Nova Southeastern University (2064)
- University of South Florida (1879)
- South Dakota State University (1723)
- Louisiana State University (1691)
- The University of Southern Mississippi (1686)
- Morehead State University (1653)
- Changsha University of Science and Technology (1534)
- WellBeing International (1467)
- California Polytechnic State University, San Luis Obispo (1446)
- University of Texas Rio Grande Valley (1406)
- Virginia Commonwealth University (1400)
- Western Kentucky University (1385)
- Wright State University (1311)
- Portland State University (1303)
- University of South Carolina (1296)
- Washington University in St. Louis (1276)
- University of Nevada, Las Vegas (1185)
- University of Montana (1168)
- Eastern Illinois University (1150)
- Valparaiso University (1136)
- Keyword
-
- Humans (4838)
- Animals (2771)
- Mice (1849)
- Female (1704)
- Biology (1541)
-
- Male (1405)
- Climate change (1188)
- Ecology (1055)
- Western Australia (1030)
- Biodiversity (926)
- Conservation (925)
- Cancer (919)
- Genetics (862)
- Biological sciences (847)
- Taxonomy (838)
- Evolution (779)
- Adult (667)
- Tumor (662)
- Metabolism (655)
- Genomics (654)
- Inflammation (636)
- Invasive species (634)
- Middle Aged (634)
- Turkey (633)
- Mutation (630)
- Apoptosis (609)
- Gene expression (597)
- Behavior (571)
- Bacteria (570)
- Nitrogen (562)
- Publication Year
- Publication
-
- IGC Proceedings (1977-2023) (9261)
- Faculty, Staff and Student Publications (4506)
- Theses and Dissertations (3811)
- Electronic Theses and Dissertations (2490)
- Faculty Publications (1939)
-
- All Graduate Theses and Dissertations, Spring 1920 to Summer 2023 (1791)
- Biology Faculty Publications (1732)
- Turkish Journal of Biology (1669)
- Biological Sciences Faculty Publications (1549)
- Food and Machinery (1534)
- Faculty, Staff and Students Publications (1437)
- Roger W. Barbour Slide Collection (1387)
- Graduate Theses and Dissertations (1375)
- United States Department of Agriculture Wildlife Services: Staff Publications (1304)
- Turkish Journal of Zoology (1302)
- Master's Theses (1293)
- Scanning Microscopy (1287)
- Department of Agronomy and Horticulture: Faculty Publications (1235)
- Masters Theses (1212)
- Honors Theses (1148)
- Journal of the Arkansas Academy of Science (1133)
- Insecta Mundi (1131)
- Turkish Journal of Botany (1118)
- The Great Lakes Entomologist (1089)
- Publications and Research (1046)
- Turkish Journal of Agriculture and Forestry (994)
- Journal of Undergraduate Research (971)
- School of Biological Sciences: Faculty Publications (925)
- Dissertations (876)
- Arts & Sciences Graduate Student Theses and Dissertations (866)
- Publication Type
Articles 6901 - 6930 of 159536
Full-Text Articles in Entire DC Network
Research For Selection Criteria For Grass Quality, Based Upon Animal References, M Gillet, J Scehovic, M Lila
Research For Selection Criteria For Grass Quality, Based Upon Animal References, M Gillet, J Scehovic, M Lila
IGC Proceedings (1977-2023)
In an effort to find selection criteria for intake and digestibility, based on correlations with the same characters measured on animals, we have compared 4 to 6 grasses of similar heading dates for intake, palatability, digestibility by sheep, intake by goats and many laboratory tests. 1979 results were published for Lexington Congress. Results of 1980 and 1981 springs bear them out in several points :
- palatability was a very precise and stable test
- palatability, digestibility and goat intake were stable and correlated with each other
- soluble phenols were able to predict palatability and part of digestibility
-sheep …
Using Grinding Energy Measurements For Predicting Crude Fibre Content In First Growths Of Permanent Grassland, Chr Paul, U V. Borstel, E Zimmer
Using Grinding Energy Measurements For Predicting Crude Fibre Content In First Growths Of Permanent Grassland, Chr Paul, U V. Borstel, E Zimmer
IGC Proceedings (1977-2023)
The performance of a grinding energy test for the simple and rapid prediction of crude fibre content in spring growth of grassland was investigated during three successive years and its potential for deriving recommendations on appropriate cutting dates demonstrated. The grinding energy test appeared to achieve a precision comparable to that for near infrared based predictions of crude fibre reported from the literature. Prediction bias consisting in a mean 2% crude fibre underestimation was found to occur in one year presumably due to an anomalous _constellation of environmental conditions. This appeared to have affected the pattern of plant development and …
Cell Wall Composition And Rate Of Digestion Of Brown-Midrib Sorghum Internodes As Influenced By Maturity, J H. Cherney, J J. Volenec, K J. Moore
Cell Wall Composition And Rate Of Digestion Of Brown-Midrib Sorghum Internodes As Influenced By Maturity, J H. Cherney, J J. Volenec, K J. Moore
IGC Proceedings (1977-2023)
More information is needed on the growth of secondary plant cell walls in forage species, and the relationship of cell wall structure to rate and extent of digestion. Our overall objective was to relate changes in cell wall composition with maturation to rate and extent of cell wall digestion. The seventh intemode of normal and brown-midrib ( bmr) sorghum (Sorghum bicolor (L.) Moench.) was harvested at eight maturities beginning with the cessation of intemode elongation. Dry weight per segment was determined for each maturity stage. Lignin accumulation in lntemode 7 increased during maturation, with the rate of lignin synthesis being …
The Effect Of The Species, Stage Of Maturity And Level Of Intake Of Grass On The Efficiency Of Microbial Protein Synthesis In The Rumen Of Cattle, F J. Hart, Jane Leibholz
The Effect Of The Species, Stage Of Maturity And Level Of Intake Of Grass On The Efficiency Of Microbial Protein Synthesis In The Rumen Of Cattle, F J. Hart, Jane Leibholz
IGC Proceedings (1977-2023)
This study was undertaken because there is a paucity of information in the literature on the efficiency of microbial protein synthesis in the rumen of cattle when grass is fed as the sole diet. There is also little experimental data available on the factors which affect the efficiency of microbial protein synthesis. The work involved feeding six rumen fistulated Friesian steers with three species of grass which were harvested at various tages of maturity. In addition each maturity of forage was fed at three 15levels of orp5 nic matter ( OM) intake.
as sampled at the omasum and microbial protein …
The Influence Of Aging On Forage Quality Of Individual Switchgrass Leaves And Stems, B Anderson
The Influence Of Aging On Forage Quality Of Individual Switchgrass Leaves And Stems, B Anderson
IGC Proceedings (1977-2023)
Cattle selectrively graze switchgrass (Panicum virgatum L.) tops prior to the boot stage and prefer vegetative culms and new tillers following heading. Therefore, a study was conducted to evaluate the changes in forage composition of individual leaves and stems during growth to determine if grazing selection may be influenced by aging. Plants were cut periodically at ground level from collaring of the first leaf until anthesis. Leaves (leaf blade plus sheath) of different ages, stems, and the whorl were hand separated at each harvest. Crude protein, in vitro dry matter disappearance (IVDMD), neutral and acid detergent fiber, lignin, and …
Harvesting Alyceclover For Maximum Dry Matter Yield And Nutrient Value, D D. Baltensperger, W G. Blue, W H. Anderson
Harvesting Alyceclover For Maximum Dry Matter Yield And Nutrient Value, D D. Baltensperger, W G. Blue, W H. Anderson
IGC Proceedings (1977-2023)
Limited information is available on the quality of alyceclover (Alysicarpus vaginalis) in relation to plant stress. This study was undertaken to clarify the relationship between plant maturity and forage yield, quality and mineral composition in order to optimize each at harvest. Alyceclover was grown for two summers and new plots were harvested weekly through the pod-fill stage of development beginning eight weeks after planting. Samples were analyzed for dry matter, organic matter, In vitro dry matter digestibility, nitrogen, phosphorus, potassium, calcium, magnesium, manganese, copper, iron and zinc. Dry matter yields increased through the flowering stage of development except …
Adaptation Of The Inra System Of Determination And Expression Of The Nutritive Value Of Forages To The Tropical Conditions In The Caribbean Island, A Xande, R Garcia-Trujillo
Adaptation Of The Inra System Of Determination And Expression Of The Nutritive Value Of Forages To The Tropical Conditions In The Caribbean Island, A Xande, R Garcia-Trujillo
IGC Proceedings (1977-2023)
This program have undertaken a series of trials of systematic measure of nu tritive value on the tropical forages. The choice of the calculation and of the way of expression of energetic and nitrogen values required comparation measures in different systems as well as attempts in alimentation before adopting the new french INRA system of energy (UFL-UFV) and of the protein value (POI). The general results of this study is a preamble to the diffusion of the table of nutritive value of the tropical forages. For this purpose 450 samples of forages have been analysed on sheep in cage of …
Methodology For Environmental Toxicology: Assessing Feeding And Rearing Strategies In Largemouth Bass (Micropterus Nigricans) Larvae, Amber Hitchins, Hannah Mcneese, Deise Cruz, Andrew Todd, Maria Sepúlveda, Tyler Hoskins
Methodology For Environmental Toxicology: Assessing Feeding And Rearing Strategies In Largemouth Bass (Micropterus Nigricans) Larvae, Amber Hitchins, Hannah Mcneese, Deise Cruz, Andrew Todd, Maria Sepúlveda, Tyler Hoskins
Discovery Undergraduate Interdisciplinary Research Internship
Poly- and perfluoroalkyl substances (PFAS) are an anthropogenic group of chemicals known for their persistence in the environment and their potential to bioaccumulate. PFAS can bioaccumulate in largemouth bass (Micropterus nigricans), yet the effects of exposure on bass larvae are unknown. While largemouth bass are commonly raised for aquaculture, techniques for rearing bass which enable controlled experiments at known densities, a necessity for toxicity studies, are poorly understood. Furthermore, the live prey typically used in existing approaches are not suitable for PFAS studies due to high background concentrations. The objective of this project was to assess different venues …
Non-Spectator Behavior Of A Neutral Phosphine Ligand Driven By A Redox-Active Boron Cluster, Jared R. Riffle, Cash L. Jowers, Sarah Luna, Mark D. Smith, Dmitry V. Peryshkov
Non-Spectator Behavior Of A Neutral Phosphine Ligand Driven By A Redox-Active Boron Cluster, Jared R. Riffle, Cash L. Jowers, Sarah Luna, Mark D. Smith, Dmitry V. Peryshkov
Faculty Publications
A new concept of ligand ambiphilicity that relies on the redox behavior of the indirectly coordinated boron cluster scaffold instead of the direct involvement of a single center in a ligand is introduced. A copper(I) complex of a carboranyl-based triphosphine, [tBuP-closo-{C2B10}-PhP-closo-{C2B10}-tBuP]CuPF6, in acetonitrile solution coordinates an exogenous X− anion (X− = Cl− or N3−) at the phosphorus center of the ligand and not at the cationic metal site to form [tBuP(X)-nido-{C2B …
Ctnna3 Deficiency Promotes Heart Regeneration By Enhancing Cardiomyocyte Proliferation In Neonatal Mice, Sha Zou, Wuhou Dai, Wufan Tao, Jifen Li, Zeyi Cheng, Hongyan Wang
Ctnna3 Deficiency Promotes Heart Regeneration By Enhancing Cardiomyocyte Proliferation In Neonatal Mice, Sha Zou, Wuhou Dai, Wufan Tao, Jifen Li, Zeyi Cheng, Hongyan Wang
Department of Medicine Faculty Papers
Background: Heart regeneration requires renewal of lost cardiomyocytes. However, the mammalian heart loses its proliferative capacity soon after birth, and the molecular signaling underlying the loss of cardiac proliferation postnatally is not fully understood.
Purpose: This study aimed to investigate the role of Catenin alpha 3 (Ctnna3), coding for alpha T catenin (αT-catenin) protein in regulating cardiomyocyte proliferation and heart regeneration during the neonatal period.
Methods: Here we report that ablation of Ctnna3 and highly expressed in hearts, accelerated heart regeneration following heart apex resection in neonatal mice.
Results: Our results show that Ctnna3 deficiency enhances cardiomyocyte proliferation …
Examining Light-Circadian Interactions In Regulation Of Amyloid Plaque Pathology, Melvin William King
Examining Light-Circadian Interactions In Regulation Of Amyloid Plaque Pathology, Melvin William King
Arts & Sciences Graduate Student Theses and Dissertations
Circadian disruption has long been appreciated as a downstream consequence of Alzheimer’s Disease in humans. However, an upstream role for circadian disruption in regulating AD pathology remains an open question. The mammalian circadian system is hierarchical, with cellular clocks – driven largely by BMAL1 – synchronized by the hypothalamic SCN (suprachiasmatic nucleus) via a combination of hormonal and synaptic cues. To assess the relative contributions of each component to Alzheimer’s Disease pathology, we crossed mice harboring either microglial (Cx3cr1/Lyz2-Cre) or GABAergic (VGAT-iCre, expressed in more than 95% of the SCN) BMAL1-knockout to mouse models of Aβ aggregation (5xFAD; APP/PS1-21), which …
Gene Regulatory Network Prediction Using Machine Learning, Deep Learning, And Hybrid Approaches, Sai Teja Mummadi, Md Khairul Islam, Victor Busov, Hairong Wei
Gene Regulatory Network Prediction Using Machine Learning, Deep Learning, And Hybrid Approaches, Sai Teja Mummadi, Md Khairul Islam, Victor Busov, Hairong Wei
Michigan Tech Publications
Construction of gene regulatory networks (GRNs) is essential for elucidating the regulatory mechanisms underlying metabolic pathways, biological processes, and complex traits. In this study, we developed and evaluated machine learning, deep learning, and hybrid approaches for constructing GRNs by integrating prior knowledge and large-scale transcriptomic data from Arabidopsis thaliana, poplar, and maize. Among these, hybrid models that combined convolutional neural networks and machine learning consistently outperformed traditional machine learning and statistical methods, achieving over 95% accuracy on the holdout test datasets. These models not only identified a greater number of known transcription factors regulating the lignin biosynthesis pathway but also …
Retrotransposon Methylation Profiles And Survival In Black Women With High-Grade Serous Ovarian Carcinoma, Christelle Colin-Leitzinger, Katherine A Lawson-Michod, Courtney E Johnson, Irma M Vlasac, Sean Yoder, Tania Mesa, Dana Roeber, Chad Huff, Michelle A T Hildebrandt, Kristin Haller, Anthony J Alberg, Elisa V Bandera, Melissa Bondy, Michele L Cote, Theresa Hastert, Edward S Peters, Paul D Terry, Andrew B Lawson, Andrew Berchuck, Brooke L Fridley, Jing-Yi Chern, Jennifer A Doherty, Jeffrey R Marks, Joellen M Schildkraut, Brock C Christensen, Lucas A Salas, Lauren C Peres
Retrotransposon Methylation Profiles And Survival In Black Women With High-Grade Serous Ovarian Carcinoma, Christelle Colin-Leitzinger, Katherine A Lawson-Michod, Courtney E Johnson, Irma M Vlasac, Sean Yoder, Tania Mesa, Dana Roeber, Chad Huff, Michelle A T Hildebrandt, Kristin Haller, Anthony J Alberg, Elisa V Bandera, Melissa Bondy, Michele L Cote, Theresa Hastert, Edward S Peters, Paul D Terry, Andrew B Lawson, Andrew Berchuck, Brooke L Fridley, Jing-Yi Chern, Jennifer A Doherty, Jeffrey R Marks, Joellen M Schildkraut, Brock C Christensen, Lucas A Salas, Lauren C Peres
Faculty, Staff and Student Publications
Introduction: Retrotransposons (REs) constitute nearly half of the genome and include long terminal repeat (LTR) elements, Long INterspersed Elements (LINE), and Short INterspersed Elements (SINE). REs are typically silenced in somatic tissues via DNA methylation but can be reactivated through DNA hypomethylation, potentially impacting gene regulation. Here, we investigate genome-scale profiles of RE methylation in high-grade serous ovarian carcinoma (HGSOC) and associations with survival among Black women.
Methods: Methylation levels of LTR, LINE-1, and Alu (type of SINE) in 200 HGSOC tumors were predicted using a random forest approach and clustered using multiple consensus algorithms. Associations between RE methylation clusters …
Dissecting Macrophage Metabolism In Metabolic Liver Disease, Mandy Mei-Ying Chan
Dissecting Macrophage Metabolism In Metabolic Liver Disease, Mandy Mei-Ying Chan
Arts & Sciences Graduate Student Theses and Dissertations
Metabolic dysfunction-associated steatotic liver disease (MASLD) is the most common cause of chronic liver disease around the globe; however, the mechanisms that lead to the progression of metabolic liver disease are poorly understood. Liver-resident macrophages, known as Kupffer cells (KCs), are the largest population of macrophage in the human body, playing a critical role in immune sensing and tissue homeostasis. In the context of MASLD, KCs undergo cell death through an unclear mechanism, and monocytes enter the liver where they differentiate into macrophages. Next-generation sequencing and spatial-omics studies have revealed significant, heterogeneity in the recruited macrophage populations in both human …
Computational And In Vitro Investigation Of P. Crocatum Bioactive Compounds As Pancreatic Lipase Inhibitors, Gusnia Meilin Gholam, Dimas Andrianto, Dewi Anggraini Septaningsih, Mega Safithri
Computational And In Vitro Investigation Of P. Crocatum Bioactive Compounds As Pancreatic Lipase Inhibitors, Gusnia Meilin Gholam, Dimas Andrianto, Dewi Anggraini Septaningsih, Mega Safithri
Karbala International Journal of Modern Science
Obesity, a prevalent metabolic disorder characterized by excessive fat accumulation, can severely affect overall health if left untreated. This study investigated the potential of a 70% ethanol extract from Piper crocatum (red betel) leaves as an in vitro inhibitor of pancreatic lipase (PL), supported by computational analyses to identify alternative compounds to orlistat. The phytochemical profile was characterized using LC-MS/MS, revealing alkaloids and terpenoids with contents of 1.1 ± 0.01 mg CE/g and 3.14 ± 0.3 mg UAE/g, respectively. The extract exhibited 49 ± 9.1% inhibition of PL activity. Molecular docking identified three promising compounds: calanolide A (10.43 kcal/mol), myricanone …
Baseline Testosterone Levels Peak During The Inactive Period In Male Degus (Octodon Degus), Yuta Sato , '26, Tate M. S. Garcia , '26, Josephine S. Low , '27, Carolyn M. Bauer
Baseline Testosterone Levels Peak During The Inactive Period In Male Degus (Octodon Degus), Yuta Sato , '26, Tate M. S. Garcia , '26, Josephine S. Low , '27, Carolyn M. Bauer
Biology Faculty Works
The steroid hormone testosterone is important for stimulating male reproductive processes including territory acquisition, mating displays, and spermatogenesis. When examining the relative effects of testosterone on reproductive processes, it is most reasonable to focus on peak baseline testosterone levels, especially for reproductive processes that may occur during specific times of day, such as mating and spermatogenesis. However, some studies have not found consistent positive relationships between circulating testosterone levels and reproductive variables. These nonsignificant relationships could be driven by methodology, as most studies in wild, free-living animals collect blood samples during an animals' active period, yet many species show peak …
In Silico Prediction Of Cytotoxic T-Cell Epitopes From Helicobacter Pylori Virulence Factors Using An Immunoinformatics Approach, Demy Valerie Chacon, Kiana Alika Co, Daphne Noreen Enriquez, Aubrey Love Labarda, Reanne Eden Manongsong, Edward Kevin B. Bragais
In Silico Prediction Of Cytotoxic T-Cell Epitopes From Helicobacter Pylori Virulence Factors Using An Immunoinformatics Approach, Demy Valerie Chacon, Kiana Alika Co, Daphne Noreen Enriquez, Aubrey Love Labarda, Reanne Eden Manongsong, Edward Kevin B. Bragais
Biology Faculty Publications
Background: Helicobacter pylori infects approximately half of the global population, leading to gastric and duodenal ulcers. Despite the availability of antibiotics, challenges such as patient reluctance, high treatment costs, and antibiotic resistance limit their effectiveness, making vaccination a promising alternative. This study used immunoinformatics to identify candidate epitopes for a multiepitope vaccine construct against H. pylori.
Material and methods: The protein variability server was utilized for conservation analysis. The epitopes were screened for antigenicity, allergenicity, toxicity, cross-reactivity, and population coverage. Selected epitopes were docked with their corresponding human leukocyte antigen (HLA) alleles, and thermodynamic quantities were determined. Five virulence …
Assessing The Ecological Drivers And Consequences Of Partial Migration In Hudson River Striped Bass Over Three Decades, Caitlin Egan Zimmer
Assessing The Ecological Drivers And Consequences Of Partial Migration In Hudson River Striped Bass Over Three Decades, Caitlin Egan Zimmer
Biology ETDs
Climate change and shifts in human land use have caused extensive impacts to the connectivity, structure, and resilience of aquatic populations. Partial migration (PM), where only some individuals from a population migrate while the rest remain resident, can mitigate population-level responses to environmental stressors. However, little is known of the underlying mechanisms promoting variation in migration and whether these shift over time. In the Hudson River Estuary, striped bass (Morone saxatilis) are known to exhibit anadromous PM behavior. Here, I measured carbon isotopes (δ13C) of essential amino acids in striped bass scales to determine variation in …
The Island Biogeography Of Mangrove-Dwelling Vertebrates: Isolation, Specialisation, And Extinction, Jian Xiong David Tan
The Island Biogeography Of Mangrove-Dwelling Vertebrates: Isolation, Specialisation, And Extinction, Jian Xiong David Tan
Biology ETDs
Mangroves are highly dynamic ecosystems that are widely distributed across the coastlines of the tropics and subtropics. Despite their low plant diversity, mangroves host a disproportionately high number of terrestrial vertebrate taxa. However, mangrove specialists — taxa that only occur in mangrove habitats — exhibit a global distribution that is incongruous with the broader background distribution patterns of mangrove-associated fauna, exhibiting higher diversity in Australia and Southeast Asia. This dissertation therefore aims to assess how the diversity and distribution of mangrove specialist fauna may have been shaped by the historical biogeography of mangroves, and the effects of mangrove specialisation on …
Plant Reproductive Strategies Shift In Response To Restoration Using Beaver Dam Analogs, Laurel F. Martinez
Plant Reproductive Strategies Shift In Response To Restoration Using Beaver Dam Analogs, Laurel F. Martinez
Biology ETDs
As riparian communities become increasingly degraded, restoration treatments are being implemented in streams to recover ecosystem functions. In the Jemez Mountains, beaver dam analogs (BDAs) are used to restore degraded streams by connecting the floodplain and increasing the extent of anoxic soil conditions. These environmental disturbances are expected to alter how riparian plants recruit, particularly their allocation to seed-based and vegetative regeneration strategies. We investigated whether BDAs and associated changes in soil water filled pore space (WFPS) affected riparian plant recruitment. We investigated the number of flowering stems as a proxy for seed-based regeneration and rhizome length and mass as …
Ecoimmunology Of Dirty Physella Acuta Snails, Kevin Arthur Mcquirk
Ecoimmunology Of Dirty Physella Acuta Snails, Kevin Arthur Mcquirk
Biology ETDs
Research on Physella acuta, an invasive freshwater snail, reveals insights into its parasitology, fitness, and molecular biology. Morphological and molecular analyses revealed two distinct mitogenomic lineages, local (B) and invasive (A) strains of native P. acuta, both having comparable trematode infection rates, suggesting that the low infection rates observed from A in invaded regions result from "enemy release" rather than immune incompatibility. Fitness assessments showed that while lineages A and B performed similarly under laboratory conditions, rewilding experiments revealed significantly higher fitness in lineage A. Transcriptomic profiling supported these differences, with A snails showing greater immune-related gene expression and …
Spatial Ecology And Habitat Selection Of Eastern Pinesnakes: Case Study On The Importance Of Scale In Conservation Biology, Matthew Grisnik, Alan Jones, Rachel Brubaker, Andrew M. Grosse, Scott L. Parker
Spatial Ecology And Habitat Selection Of Eastern Pinesnakes: Case Study On The Importance Of Scale In Conservation Biology, Matthew Grisnik, Alan Jones, Rachel Brubaker, Andrew M. Grosse, Scott L. Parker
Biology
Species are in decline world-wide, driven by multiple factors including habitat fragmentation. Understanding the habitat selection processes of species in these fragmented landscapes has become a focus of ecological studies and is a major component of conservation plan development. However, understanding how landscape level processes influence patterns of habitat selection is often ignored. Here we assessed the influence of landscape level processes in the habitat selection of Eastern Pinesnakes, a species in decline, within a protected area in South Carolina, USA. Over the course of a year, we tracked 8 Eastern Pinesnakes within a small protected area. Snakes exhibited seasonal …
Using Triple Oxygen Isotopes To Investigate Water Usage In Desert Ecosystems, Cloe V. Knutson
Using Triple Oxygen Isotopes To Investigate Water Usage In Desert Ecosystems, Cloe V. Knutson
Earth and Planetary Sciences ETDs
In arid environments, maintaining water balance can be more critical for survival than obtaining food. As droughts intensify, understanding how animals manage body water is essential. Triple oxygen isotope analysis provides a novel way to trace water sources in animals, distinguishing contributions from free water, food-derived oxygen, and atmospheric O2. We developed an equilibration method using CO2–H2O oxygen exchange and measured δ’18O and Δ’17O values via tunable infrared laser direct spectroscopy (TILDAS). Validated against traditional fluorination methods, this technique enables streamlined analysis of whole blood and plant samples. Applied to …
Exploration, Expansion, And Optimization Of Bacteriophage Virus-Like Particle Vaccines, Andzoa N. Jamus
Exploration, Expansion, And Optimization Of Bacteriophage Virus-Like Particle Vaccines, Andzoa N. Jamus
Biomedical Sciences ETDs
Bacteriophage virus-like particles are highly immunogenic, self-assembling platforms used for various vaccines. This work shows efforts to explore new vaccine candidates against Chlamydia trachomatis, targeting proteins that play critical roles in attachment and entry into the host cell, as well as in pathogenesis and bacteria proliferation. This work also shows the optimization of previously identified candidates, by investigating how altering routes of immunization can change the antibody profiles elicited, both systemically and locally. Finally, this work shows the establishment of various Chlamydia infection models in an effort to expand the ways in which vaccine efficacy can be investigated, particularly …
Immune Regulation In Fungal Airway Inflammation And Host Defense, Ruoning Wang
Immune Regulation In Fungal Airway Inflammation And Host Defense, Ruoning Wang
Biomedical Sciences ETDs
Asthma is a chronic inflammatory disease of the lungs characterized by complex pathophysiological mechanisms and diverse endotypes, primarily categorized as T helper type 2 cell (Th2)-high and Th2-low asthma. Despite significant advances in understanding asthma pathogenesis, the mechanisms governing the pulmonary immune system’s response to external challenges have not been fully understood. To address these gaps, this comprehensive project was designed to investigate the interplay between fungal infections and specific CD4+ T cell populations in asthma. Our findings suggest that fungal infections can contribute to neutrophilic asthma by promoting the migration of platelet-myeloid aggregates into the lungs. We also …
Gallic, Aconitic, And Crocetin Acids As Potential Tnf Modulators: An Integrated Study Combining Molecular Docking, Dynamics Simulations, Admet Profiling, And Gene Expression Analysis, Adolat Manakbayeva, Ahdrey P. Bogoyavlenskiy, Timur Kerimov, Igor Yershov, Pavel Alexyuk, Madina Alexyuk, Vladimir Berezin, Vyacheslav Dushenkov
Gallic, Aconitic, And Crocetin Acids As Potential Tnf Modulators: An Integrated Study Combining Molecular Docking, Dynamics Simulations, Admet Profiling, And Gene Expression Analysis, Adolat Manakbayeva, Ahdrey P. Bogoyavlenskiy, Timur Kerimov, Igor Yershov, Pavel Alexyuk, Madina Alexyuk, Vladimir Berezin, Vyacheslav Dushenkov
Publications and Research
Organic acids, as natural metabolites, play crucial roles in human metabolism and health. Tumor Necrosis Factor (TNF), a pivotal mediator in immune regulation and inflammation, is a key therapeutic target. We evaluated ten organic acids as TNF modulators using in silico molecular docking, followed by detailed ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) profiling and molecular dynamics (MD) simulations for three lead candidates: gallic, aconitic, and crocetin acids. Their effects on TNF gene expression were then assessed in vivo using a mouse leukocyte model. The in silico results indicated that crocetin had the highest TNF binding affinity (−5.6 to −4.6 …
Elevated Nr2f1 Underlies The Persistence Of Invasive Disease After Treatment Of Braf-Mutant Melanoma, Manoela Tiago, Timothy J. Purwin, Casey D. Stefanski, Renaira Oliveira Da Silva, Mitchell E. Fane, Yash Chhabra, Jelan I. Haj, Jessica L. F. Teh, Rama Kadamb, Weijia Cai, Sheera Rosenbaum, Vivian Chua, Nir Hacohen, Michael A. Davies, Jessie Villanueva, Inna Chervoneva, Ashani T. Weeraratna, Dan A. Erkes, Claudia Capparelli, Julio A. Aguirre-Ghiso, Andrew E. Aplin
Elevated Nr2f1 Underlies The Persistence Of Invasive Disease After Treatment Of Braf-Mutant Melanoma, Manoela Tiago, Timothy J. Purwin, Casey D. Stefanski, Renaira Oliveira Da Silva, Mitchell E. Fane, Yash Chhabra, Jelan I. Haj, Jessica L. F. Teh, Rama Kadamb, Weijia Cai, Sheera Rosenbaum, Vivian Chua, Nir Hacohen, Michael A. Davies, Jessie Villanueva, Inna Chervoneva, Ashani T. Weeraratna, Dan A. Erkes, Claudia Capparelli, Julio A. Aguirre-Ghiso, Andrew E. Aplin
Department of Pharmacology, Physiology, and Cancer Biology Faculty Papers
Despite the success of targeted inhibitors in cutaneous melanoma, therapeutic responses are limited by the aged tumor microenvironment and drug-tolerant residual cells. Given the similarities between drug tolerance and cellular dormancy, we studied the dormancy marker, nuclear receptor subfamily 2 group F member 1 (NR2F1), in response to BRAF-V600E inhibitors (BRAFi) plus MEK inhibitors (MEKi) in BRAF-mutant melanoma models. Transcriptomic analysis of melanoma patient samples treated with BRAFi + MEKi showed increased NR2F1. NR2F1 was highly expressed in the drug-tolerant invasive cell state of minimal residual disease in patient-derived and mouse-derived xenografts on BRAFi + MEKi. NR2F1 over-expression was sufficient …
A Phase I Trial Of Evorpacept, Lenalidomide And Rituximab For Patients With B-Cell Non-Hodgkin Lymphoma, Paolo Strati, Lei Feng, Andrey Tyshevich, Darya Shavronskaya, Julia Alesse, Noel English, Elizabeth Sheehan, Nikita Syzrantsev, Alexander Nesmelov, Tony Z Zhuang, Dai Chihara, Jason R Westin, Sairah Ahmed, Luis E Fayad, Jared Henderson, Kylie Dent, Elizabeth Mcchesney, Sattva S Neelapu, Christopher R Flowers
A Phase I Trial Of Evorpacept, Lenalidomide And Rituximab For Patients With B-Cell Non-Hodgkin Lymphoma, Paolo Strati, Lei Feng, Andrey Tyshevich, Darya Shavronskaya, Julia Alesse, Noel English, Elizabeth Sheehan, Nikita Syzrantsev, Alexander Nesmelov, Tony Z Zhuang, Dai Chihara, Jason R Westin, Sairah Ahmed, Luis E Fayad, Jared Henderson, Kylie Dent, Elizabeth Mcchesney, Sattva S Neelapu, Christopher R Flowers
Faculty, Staff and Student Publications
Introduction: SIRPα+ macrophages can mediate resistance to lenalidomide and rituximab (R2) in patients with B-cell non-Hodgkin lymphoma (B-NHL). Evorpacept (ALX148) is a novel CD47 blocker that abrogates interactions between lymphoma cells and SIRPα+ macrophages.
Methods: Adult patients with B-NHL who had received at least 2 prior lines of systemic therapy were included in this single arm phase I study (NCT05025800). Evorpacept was administered intravenously (IV), in a 28-day cycle, until progression, at two dose levels (DL): 30 mg/Kg on day (D) 1 and D15 (DL1), or 60 mg/Kg on day 1 (DL2); rituximab 375 mg/m2 IV was given …
Exploring Immune System Through Computational Modeling: A Comprehensive Study Of Lymph Nodes And Immune Response Scaling, Vaccine Efficacy, And Large-Scale Extreme First Passage Time, Jannatul Ferdous
Computer Science ETDs
The adaptive immune response is a complex defense mechanism that develops over time to recognize and eliminate pathogens with remarkable precision and durability. This dissertation investigates the dynamics, scaling, and efficiency of the adaptive immune response through a synthesis of computational modeling, mathematical analysis, and agent-based simulations. First, we analyze the topology of the lymphatic network and investigate the T cell search time to find the lymph node that is containing the matching dendritic cell. Second we show how the scaling of lymph node number and volume with body mass, leads to scale-invariant search times for T cells locating antigen-bearing …
Glucose Metabolism And Its Direct Action In Cancer And Immune Regulation: Opportunities And Challenges For Metabolic Targeting, Bo-Syong Pan, Che-Chia Hsu, Hsin-En Wu, Yuan-Ru Chen, Xiaobo Zhou, Shu-Chi Wang, Chia-Yang Li, Hui-Kuan Lin
Glucose Metabolism And Its Direct Action In Cancer And Immune Regulation: Opportunities And Challenges For Metabolic Targeting, Bo-Syong Pan, Che-Chia Hsu, Hsin-En Wu, Yuan-Ru Chen, Xiaobo Zhou, Shu-Chi Wang, Chia-Yang Li, Hui-Kuan Lin
Faculty, Staff and Student Publications
Glucose metabolism is a pivotal hub for cellular energy production and the generation of building blocks that support cell growth, survival, and differentiation. Cancer cells undergo metabolic reprogramming to sustain rapid proliferation, survive in harsh microenvironments, and resist therapies. Beyond producing energy and building blocks to meet cancer cell demands, glucose metabolism generates numerous metabolites that serve as signaling molecules, orchestrating signaling pathways and epigenetic modifications that regulate cancer cell phenotypes and immunity. In this review, we discuss how glucose, through its metabolism and direct actions, influences diverse biological processes driving cancer progression and therapeutic resistance, while also exploring metabolic …