Digital Commons Network^™

Reel Into Fishing!: Providing A Recreational Fishing Education Program For Youth, Amelia Valente, Douglas R. Zemeckis, Lisa Morse, Gene Nigro

Journal of Extension

New Jersey is known as the Garden State, but with over 130 miles of Atlantic coastline, it also has very productive marine ecosystems that offer numerous opportunities for recreational marine fishing. The International Game Fish Association, a nonprofit organization committed to the conservation of game fish and the promotion of responsible, ethical angling practices, collaborated with Rutgers Cooperative Extension to host a youth educational program entitled Reel Into Fishing! The objective is to educate participants through hands-on engagement on ethical fishing practices and marine science to help develop the next generation of responsible anglers.

Summer Research Internships In Agricultural Biotechnology For Off-Campus Undergraduate Students, Aaron J. Thomas

Funded Research Records

No abstract provided.

Look Out For Our Kind, Christof Koch

Animal Sentience

Strongly supportive overall of Birch’s broad tent Sentience Project, I offer an alternative dyadic, single-class, two-stage process based on estimating the probability for sentience, and the associated confidence, for any individual or taxonomic group. I criticize Birch’s narrow computational framework when addressing the question of algorithmic sentience; there are alternative approaches.

Ai Is Not The Kind Of Thing That Can Ever Be Sentient, Lori Marino

Animal Sentience

Sentience evolved to allow organisms to move through their environment avoiding harms and achieving benefits. Sentience did not evolve from computation. It evolved from valenced feelings. AI (even robots) are not embodied and are not the kind of thing that needs to be sentient. There is no way to get from computations to feelings. They are qualitatively different things. We should avoid being lulled into thinking that an inanimate object designed to engage our propensity for anthropomorphism, like AI, is actually a mind.

Spatial Identity In Transition: Revitalizing Surakarta’S Heritage Markets Through Community-Based Placemaking, Eko Nursanty, Sri Mulyani, I Wayan Andhika Widiantara, Arturo Galay Cauba

Journal of Environmental Science and Sustainable Development

Traditional markets are essential socio-cultural infrastructures in heritage cities, shaping everyday interactions, economic life, and collective memory. In Surakarta, four historic markets—Pasar Gede, Pasar Klewer, Pasar Legi, and Pasar Triwindu—sustain the city’s urban identity. However, rapid modernization, commercial restructuring, and shifting consumer behavior have disrupted their spatial and symbolic continuity, raising concerns about the erosion of cultural meaning. Previous studies examined traditional markets mainly from economic or architectural perspectives, rarely exploring how their multidimensional identity evolves under urban transformation. This study investigates how spatial, social, symbolic, and environmental dimensions collectively shape market-based authenticity and the urban identity of Surakarta. A …

Bull’S-Eye On Borrelia: A Commensal And Consequential Pathogen, Alan L. Gillen

Faculty Publications and Presentations

If Lyme disease causes such urgent and chronic disease issues, where do Borrelia bacteria and ticks fit into a very good creation (Genesis 1)? How did bacteria and ticks change to rely on different hosts and blood for survival? And how are these adaptations informing today’s research in bacteriology, immunology, entomology, and disease ecology? The purposeful placement of Borrelia (Fig. 1) is most likely in the gut of wild mice (Fig. 2), not domesticated mice nor man. The bacteria are communalistic in wild mice, where they may be probiotic for mutual good (Fig. 2)—the Creator made it for good at …

Kinds Of Evidence Cited By Councilors In Municipal Council Sessions: The Case Of Santa Fe, Cebu, Philippines, Junald D. Ango

Journal of Public Affairs and Development

This paper explores the practice of evidence-based policymaking (EBPM) in the municipal council of Santa Fe, Cebu, Philippines. Data for this study is based on a content analysis of the minutes of council sessions and committee meetings from July 2022 to August 2024. The use of evidence in policymaking has caught on among policymakers in the Philippines, at both the national and local levels. However, few studies have examined policymakers' use of evidence in municipal governments, especially those in smaller, less urbanized towns. In the case of the Municipality of Santa Fe, at least 13 kinds of evidence were cited …

Mechanistic Determination Of Host Environmental Impacts On Shigella Virulence, Nicholas E. Dickenson

Funded Research Records

No abstract provided.

Transcriptomic And Genomic Insights Into Nutrient Stress Responses And Subgenome Evolution In Chenopodium, Ashley Kathleen Marcheschi

Theses and Dissertations

Chenopodium is a diverse genus of nutritionally and ecologically important species in the Amaranthaceae family. This thesis investigates two outstanding questions in the genus: how Chenopodium quinoa responds transcriptionally to nutrient deficiency and how Australian Chenopodium species are related through their subgenomic ancestry and evolutionary history. First, we characterized transcriptomic responses of C. quinoa to deficiencies of twelve essential macro- and micronutrients across leaf and root tissues using RNA sequencing. Leaves showed the strongest responses under nitrogen, potassium, magnesium, and zinc deficiency, while roots responded more evenly across conditions. Recurring responses included suppression of photosynthesis, remodeling of translational machinery, reactive …

Nitrogen Management Strategies For Specialty Tea Production In Louisiana: Rate, Source Type, And Nutrient Dynamics, Autumn D. Hilderbrand

LSU Master's Theses

Tea (Camellia sinensis L.) is an emerging specialty crop in Louisiana and the southeastern United States; however, region-specific nitrogen (N) management recommendations remain limited. This research evaluated N fertilizer source, application rate, and nutrient leaching to identify management strategies that improve nitrogen use efficiency (NUE) and environmental sustainability during tea establishment.

Three complementary studies evaluated N source replacement, application rate, and fertilizer source effects on nutrient retention and movement. The first study evaluated the replacement of urea ammonium sulfate (UAS) with blood meal (BM) while maintaining a constant annual N application rate. Fertilizer replacement did not significantly affect leaf …

Pharky, Phedro, Phractured, And Stagephright: Complete Genome Sequences Of Four Ek2 Cluster Microbacterium Phages, Susan M. R. Gurney, Medha Gupta, Deeksha Reddy, Gloria Zacharias, Aleda S. Jomy, Carly J. Smith, Matthew T. Mcdonald, Brett M. Condon

Student Papers, Posters & Projects

We report the complete genome sequence of four Microbacterium phages, Pharky, Phedro, Phractured, and StagePhright, isolated using the bacterial host Microbacterium foliorum from soil samples collected in Philadelphia. All four phages are genetically very similar and contain a gene of unknown function, which is uncommon in the EK2 cluster.

Movement And Distribution Dynamics Of Predatory Fishes In The St. Lucie Estuary, Sarah Fae Leonowicz Torre

Electronic Theses and Dissertations

Estuaries are productive but highly variable ecosystems that support recreationally and commercially valuable fisheries, as well as species of conservation concern. However, coastal development, habitat loss, altered freshwater inflow, and declining water quality can modify the environmental gradients that structure fish distributions. In the St. Lucie River and southern Indian River Lagoon, located in southeast Florida, managed freshwater discharges, watershed runoff, shoreline modification, and degradation of essential fish habitats (e.g., seagrass, oyster, and mangrove forests) have altered estuarine conditions.

This dissertation evaluates how four estuarine fish species with contrasting life histories respond to environmental variability, hydrologic disturbance, and habitat structure …

Deciphering The Potential Of Monopterus Albus Protein Hydrolysate As A Therapeutic Candidate Against Cervical Cancer By Integrating Content Analysis, Network Pharmacology, And Molecular Docking, Okid Parama Astirin, Widya Mega Rahmawati, Elisa Herawati, Tetri Widiyani, Lili Pandan Sari, Sherly Octaviana

Karbala International Journal of Modern Science

Cervical cancer has a high incidence rate in women, making the development of cancer drugs increasingly urgent. Asian swamp eel protein hydrolysate shows great promise as an anticancer candidate. This study aimed to reveal the potential of Asian swamp eel protein hydrolysate as an anticancer candidate in the cervix. Asian swamp eel protein hydrolysate was produced by hydrolyzing flesh with the enzyme alcalase. Compounds and peptides were identified using LC-HRMS. These compounds and peptides were analyzed using network pharmacology, gene ontology, and molecular docking. The results identified 153 endogenous compounds, including fatty acids and peptides. The key proteins targeted by …

A Comparative Expression Analysis Of Selected Genes Involved In Secondary Metabolites Biosynthesis Among Three Alfalfa Cultivars Grown In Iraq, Izdehar Yahia Obaid, Bushra M. J. Alwash

Al-Bahir

Because of its abundance in proteins, vital amino acids, vitamins, and minerals that promote balanced nutrition, Medicago sativa L., also known as alfalfa, is regarded as a nutritionally excellent forage crop. In addition to its nutritional value, alfalfa produces a range of bioactive secondary metabolites, including flavonoids, alkaloids, and phenolic acids, further supporting its use in medicinal and nutritional applications. Three alfalfa cultivars grown in Iraq were examined for gene expression levels of the primary genes involved in secondary metabolite biosynthesis (PAL, COMT, CHS, and OMT). Among these cultivars are Victoria (VC), Green Gold (GC), and a local cultivar (LC). …

Nonmarine Ostracods Of Northern Cyprus: Diversity, Ecology, And Global Island Comparisons, Ahmet Özdi̇lek, Okan Külköylüoğlu

Turkish Journal of Zoology

There is a notable paucity of detailed information regarding the distribution and ecological characteristics of nonmarine Ostracoda in Northern Cyprus. Furthermore, a comprehensive assessment of their distribution across islands in the Northern and Southern Hemispheres is incomplete. To advance our understanding of ostracod diversity, distribution, and ecological preferences, a total of 79 aquatic sites in Northern Cyprus were randomly sampled between 18 May and 12 August 2022. A total of 64 ostracod taxa were identified, comprising 28 living species and 36 subfossils, with 18 species representing new records for the island. Additionally, five ostracod species were reported for the first …

Dietary Stability Of The Eurasian Beaver Revealed By Hair Stable Isotopes, Linas Balčiauskas, Rasa Vaitkevičiūtė Koklevičienė, Andrius Garbaras, Inga Garbarienė, Laima Balčiauskienė

Turkish Journal of Zoology

The Eurasian beaver (Castor fiber) is a keystone ecosystem engineer whose expanding populations increasingly occupy agricultural landscapes. Hair stable  isotope analysis was applied to reconstruct assimilated diet in 56 legally  hunted beavers in Lithuania in 2024–2025. Stable carbon isotope values were tightly  clustered (–25.53 ± 0.10‰ SE), while those for nitrogen showed greater variability (5.38 ± 0.20‰ SE), indicating limited interindividual dietary differentiation.  Generalized linear models revealed no significant effects of sex, year, or month, and  age-related differences were limited to the youngest individuals. Comparison with  published Polish data showed no significant differences in mean isotope values.  Overall, the results …

From Introduction To Biomass Dominance: The Invasive Fish Striped Piggy (Pomadasys Stridens) Reshaping Demersal Assemblages In The Eastern Mediterranean, Mehmet Cengi̇z Deval

Turkish Journal of Zoology

Rapid increases in the abundance and biomass of nonindigenous species have the potential to profoundly reshape demersal fish assemblages in the Eastern Mediterranean Sea, yet quantitative evidence from long-term standardized surveys remains scarce. In the present study, temporal changes in biomass dynamics and community structure were assessed using fishery-independent trawl surveys conducted on the continental shelf of Antalya Bay (GSA 24) during two periods a decade apart (2009–2010 and 2020–2021), with particular focus on the Lessepsian striped piggy Pomadasys stridens. Based on the second survey, in which both daytime and nocturnal sampling were conducted, the biomass index (BI) differed significantly …

Comparative Cytogenetics Of Four Phelsuma Species: Insights Into Chromosome Evolution In Malagasy Gekkonidae, Marcello Mezzasalma, Gaetano Odierna, Fabio Maria Guarino, Elvira Brunelli

Turkish Journal of Zoology

Karyotype diversification and chromosome mutations (or macromutations) such as  inversions, fusions, and fissions represent understudied factors of biological evolution.  We present in this study one of the first experimental cytogenetic analyses  on the Malagasy day geckos of the genus Phelsuma. A molecular analysis was  performed using a trait of the mitochondrial 12S and a comparative chromosome  study with traditional Giemsa coloration, Ag-NOR staining and sequential C-banding  (C-banding + Giemsa + fluorochromes) on nine individuals of Phelsuma from different  localities. The molecular analysis allowed unambiguous identification of  three species (P. lineata, P. laticauda, and P. standingi), while two additional samples  likely …

Resource Assessment Report 9: South Coast Crustacean Resource 2045-25 Assessment, Emma-Jade Tuffley, Simon De Lestang

Resource Assessment Reports

The South Coast Crustacean Resource (SCCR) comprises southern rock lobster (Jasus edwardsii), western rock lobster (Panulirus cygnus), crystal crab (Chaceon albus), giant crab (Pseudocarcinus gigas), and champagne crab (Hypothalassia acerba). The resource is accessed primarily by the South Coast Crustacean Managed Fishery (SCCMF), which operates between Augusta in the west and the South Australian border in the east. Since the 2022–23 season, the SCCMF has been managed under an Individual Transferable Quota (ITQ) system with Total Allowable Commercial Catches (TACs) set for four quota zones. Recreational fishing retains a small quantity of rock lobster only.

During the 2024–25 fishing season, …

Homocysteine Thiolactone From Translation Proofreading Is An Endogenous Ligand For Cell-Cell Signaling By The Receptor Sdia, Lorenzo Eugenio Leiva, Roberto A. Zúñiga, Gregory J. Phillips, Michael Ibba

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Several widespread mechanisms enable cellular communication and coordinate the behavior of bacterial populations. The modules responsible for cellular communication are often found in matching pairs: an enzyme that synthesizes a signal molecule and a specific receptor that decodes it. A notable exception is Escherichia coli SdiA, a homolog of known N-acyl-homoserine lactone (AHL) receptors, for which no corresponding AHL synthase exists. SdiA is an orphan receptor that enables cross-talk by sensing AHLs from other bacterial species. In this work, we investigated whether homocysteine thiolactone (HTL), an AHL-like molecule arising from a proofreading reaction of methionyl tRNA synthetase (MetRS) to correct …

Fly Density At Trash Disposal Sites As An Environmental Bioindicator Using Fly Grill, Fly Spot Card, And Fly Sticky Paper, Tri Ilmanisa, Susi Soviana, Supriyono Supriyono

Journal of Environmental Science and Sustainable Development

Flies are synanthropic insects of public health importance commonly found at trash disposal sites (TDS). Poor waste management promotes fly breeding, increases the risk of disease transmission, reflects low sanitation, and serves as an environmental bioindicator. Studies on flies at TDS in university campus environments in West Java, Indonesia, remain limited, particularly with respect to species composition, fly density, and the use of different density measurement methods. Fly density monitoring in Indonesia still relies on the fly grill method under Ministry of Health Regulation No. 2 of 2023, although alternative tools, such as fly spot cards and fly sticky paper …

Out Of This World: An Exoplanetary Workshop, Monica Storss, Bart Kuipers

ELO (un)supervised 2026

The workshop investigates how scientific constraints can productively defamiliarize human experience and create new frameworks for creativity and expression. Participants will produce original work while considering broader questions about environment, perception, and cultural formation in speculative contexts, and how the arts, sciences, and technology inform each other in relational multiplicities. This generative workshop explores how astronomical data from confirmed exoplanets can generate new poetic forms and linguistic constraints. Participants will examine how exoplanetary conditions can shape language, metaphor, and narrative structure. We'll develop from writing exercises that respond to non-terrestrial physical parameters: alternative light spectra, gravitational variations, and atmospheric compositions. …

Aquaponics: Farming Fish And Growing Greens For Grades 9–12, Amy M. Shambach,, Rebecca M. Ward, J. Stuart Carlton, Kwamena K. Quagrainie, Tomas O. Höök

Purdue University Press Books

Aquaponics: Farming Fish and Growing Greens for Grades 9–12 teaches STEM-related course material through aquaponics, a water-based agricultural system that combines aquaculture (fish production) and hydroponics (soilless vegetable production) systems. This curriculum is aligned with Next Generation Science Standards and designed to be used with an onsite aquaponics system. Topics include an introduction to aquaculture, fundamental parts of an aquaponics system, the nitrogen cycle, water quality, population dynamics, our modern food system, and more. The ten lessons presented build on each other and are intended to be delivered in sequential order. Alternatively, lessons may also be utilized as stand-alone units …

The Tagmatized Echinoderm, Richard L. Turner

Ocean Engineering and Marine Sciences Faculty Publications

Synopsis Tagmosis is a derived condition of metamerism in annelids, arthropods, and chordates in which groups of adjacent segments are modified to perform specific functions. Examples are the clitellum of earthworms, the carapace of lobsters, and the sacrum of tetrapods, to mention a few. The argument is advanced here that examples of tagmosis are not hard to find among echinoderms, a fourth major group of metameric animals; but the degree of tagmosis is weak in most cases. The first few segments of the axial skeleton are often conjoined as a perioral tagma (e.g., the jaws and other parts of the …

Sophisticated Song: Exploring The Evolution And Ontogeny Of Large Repertoires And Syntax Usage In The Bachman’S Sparrow (Peucaea Aestivalis), Heather Jean Wolverton

Electronic Theses and Dissertations

While humans have the most complex vocal communication system, many of the features that make human language so intricate can be found in other taxa. One building block of language commonly studied in animal communication is syntax, or the organization of vocalizations. Birds, wolves, and cetaceans all display complex vocal signaling that utilizes syntax. Understanding how syntax functions in different taxa can help illuminate the evolution and development of human language and the role it plays in social cognition. The Bachman’s sparrow (Peucaea aestivalis) is a species of songbird that utilizes syntax in the form of preferred transitions …

Euscorpius Emae Sp. N. (Scorpiones: Euscorpiidae), A New Scorpion Species From Montenegro, František Kovařík

Euscorpius

A new species Euscorpius emae sp. n. (Scorpiones: Euscorpiidae) from Montenegro is described, fully complemented with color photographs. E. emae sp. n. is morphologically unique by yellow to orange color, very narrow metasoma and enlarged chela. Pedipalp patella external trichobothria numbers are 4eb, 4eb_a, 2esb, 4em, 4est, 5et, and ventral aspect of patella with 9 trichobothria.

Fish Tissue Digestion And Microplastic Polymer Identification Protocol Using Open-Source Ftir Database, Shawn L. Kissinger, Vick-Ariel Privert, Jason Bystriansky, Kyle A. Grice

DePaul Discoveries

Microplastic (MP) contamination in aquatic ecosystems poses significant concerns for environmental and public health, as seafood represents a critical food source worldwide. Despite increasing evidence of MP presence in marine organisms, efficient and accessible detection methods remain essential for characterizing contamination patterns and informing regulatory frameworks. This study extracted MPs from brain, gill, intestine, liver, and muscle tissues of gilt-head bream (Sparus aurata) and European sea bass (Dicentrarchus labrax), two commercially important species from the Gulf of Cádiz, Spain, using a NaOH–HNO₃ chemical digestion protocol. Isolated particles were characterized by Fourier Transform Infrared (FTIR) spectroscopy, with …

Crystal Structural Analysis Of Medieval Human Bones Using Wide-Angle X-Ray Scattering, Selly Altangerel, Leslie Gracia

DePaul Discoveries

Female human second metacarpal (mc2) bones from a medieval cemetery at Wharram Percy, England, were studied using high-energy Wide-Angle X-ray Scattering (WAXS) at beamline 1-ID of the Advanced Photon Source at Argonne National Laboratory. The age-at-death of 33 samples was determined from molar wear and classified into 3 groups:  18-30, 30-50, and 50+ years old.  Rietveld refinements of the WAXS data were performed to obtain lattice parameters of the hexagonal carbonated apatite phase (cAp). Individual fittings for cAp peaks 00.2, 00.4, and 31.0 were performed to obtain their widths and correlate them to collagen retention. For the three samples described …

Vertebrate Diversity In Cave Systems Of Colombia: An Approach Based On Environmental Dna Metabarcoding Analysis, Rita Daniela Martinelli Marín, Carlos Andres Lasso, Francesco Sauro, Susana Josefina Caballero

International Journal of Speleology

There is currently limited knowledge of the biological communities inhabiting cave ecosystems in South America. This study examines the vertebrate community composition of 21 caves across diverse subterranean ecosystems in Colombia using environmental DNA (eDNA) analysis. Water was collected from water bodies inside caves and subterranean systems in six of the eight speleological regions of Colombia in eight departments. Water was filtered manually through a 0.8 m pore size filter and preserved with Longmire solution. A 170-base pair (bp) fragment of the 12s mitochondrial gene specific for vertebrate identification was amplified by PCR and sequenced by Illumina (metabarcoding). Data corresponding …

Optimized Immunoprecipitation Identifies Candidate Proteins Associated With Eyespot Protein Eye2 In Chlamydomonas Reinhardtii ​, Esra Öztürk, Telsa Mittelmeier, Carol Dieckmann, Atakan Sukatar

Turkish Journal of Botany

​The EYE2 protein is essential for eyespot assembly and localization in Chlamydomonas reinhardtii, yet the molecular mechanisms underlying its function remain poorly understood. In this study, we present a systematic evaluation and optimization of an immunoprecipitation (IP)-based workflow for isolating EYE2 and its associated protein complexes. Key methodological variables including strain selection, flagella removal, and detergent concentration were compared using western blotting to determine optimal extraction conditions. The combination of the cell wall-deficient cw15 strain, 4% digitonin extraction, and pH shock-mediated deflagellation significantly enhanced IP specificity and reproducibility. Using this optimized protocol, EYE2 and its potential interaction partners were isolated …