Digital Commons Network^™

Derivation And Validation Of Age-Associated Prognostic Gene Signatures Across Breast Cancer Subtypes, John Speers, Adrienne Parsons, Elizabeth Feliciano, Sandra Mcallister, Lindsey Hale

Library/Life Sciences Undergraduate Poster Competition 2026

Relatively little research has been done investigating the effects of linear age on breast-cancer specific mortality . The development of age-associated gene signatures may reveal interesting gene-set patterns with therapeautic potential. We hypothesize that the separation of patients into age categories will yield more predictive gene-signatures than an age-agnostic approach.

Colorful Proteins: Engineering A Palette Of Novel Chromoprotein Variants, Blake Olson, Anna Bowman, Kyler Fullmer, Joel Griffitts

Library/Life Sciences Undergraduate Poster Competition 2026

2nd Place - Poster Design

• Chromoproteins (CP) are naturally occurring proteins originating from corals or other marine invertebrates that exhibit colors determined by their chromophore region.1
• CPs have applications as biosensors, teaching tools, and agar art; therefore, there is a need for a wide variety of CPs.2
• Hypothesis: Editing amino acid residues around the chromophore will change the chromophore’s conformation, leading to a change in color.

Cholesterol‑Containing Membranes Decrease The Helicity Of The Snare Protein Snap‑25, Christopher E. Hunt Jr., Jason T. Carlson, Michael B. Connell, Fatima D. Dagohoy, Mike Sumison, Jonathan Madsen, Chase M. Tingen, Azer E. White, Tanner M. Blocker, Dixon J. Woodbury

Library/Life Sciences Undergraduate Poster Competition 2026

Neurotransmitter release in neurons requires membrane fusion between synaptic vesicles and the presynaptic membrane. Lipids in both membranes merge through the action of SNARE proteins including SNAP-25. Changes in SNAP-25 structure or lipid composition likely modify this process. SNAP-25 has two isoforms, SNAP-25A (25A) and SNAP-25B (25B), the expression patterns of these isoforms vary throughout different brain regions and neuronal developmental stages. In vivo SNAP-25 anchors to the presynaptic membrane via attachment of palmitic acid to at least one of the four cysteines. Here we show mixing SNAP-25 (not palmitoylated) with liposomes alters both protein structure and lipid properties. Using …

C-Fms Expresses In Early Progenitor Cells & Myeloid-Lineage Leukocytes Based On Analyzing Lineage Markers And Mapping On Ly6c X Cd31 Plots In Bone Marrow, Jane Lundgren, Kelly Amsden, Evan Boesl, Victoria Hall, Emily Shakespear, Pam Van Ry, Sandra Hope

Library/Life Sciences Undergraduate Poster Competition 2026

The Mafia mouse model expresses the green fluorescent protein (GFP) in cells that utilize the macrophage-specific c-fms promoter. The c-fms promoter controls expression of receptor for Colony Stimulating Factor 1. We hypothesize that this promotor may be utilized in bone marrow progenitor cells in addition to the mature cell expression already known in macrophage lineage cells. For this study, bone marrow cells were analyzed by flow cytometry for the expression of c-fms, early progenitor markers, and lineage-specific markers. Expression was also mapped on a Ly6CxCD31 plot, which has been used to distinguish cells based on developmental stage and lineage. This …

Cd6-Knockout Car-T Cells Display Enhanced Cytotoxicity Against Lymphoma Cell Line, Annie Larson, Alka Gaur, Nate Neyman, Collin Mickelson, K. Scott Weber

Library/Life Sciences Undergraduate Poster Competition 2026

Chimeric antigen receptor (CAR)-T cells are genetically engineered T cells that target surface antigens on cancer cells, showing remarkable effectiveness in treating blood cancers [1]. However, CAR-T cells are currently not effective in treating solid tumors, as the tumor microenvironment poses physical and metabolic barriers to effective CAR-T cell function. A notable strategy for increasing CAR-T cell cytotoxicity in a tumor microenvironment is knocking out or overexpressing some genes of the T cell.

Role Of Wadsley Defects And Cation Disorder To Enhance Monb12O33 Diffusion, Cj Sturgill, Manish Kumar, Nima Karimitari, Iva Millisavljevic, Coby S. Collins, Aaron Hegler, Hsin-Yun Joy Chao, Santosh Kiran Balijepalli, Scott T. Misture, Christopher Sutton, Morgan Stefik

Faculty Publications

Wadsley-Roth (WR) niobates have emerged as high-rate anode materials that can combine rapid ionic diffusion with good electronic conductivity. WR compounds have been defect-enhanced by limited annealing, however, such materials often contain multiple types of defects. In particular, both Wadsley defects (variable block size) and transition metal disorder have the potential to modify transport rates, however the corresponding effects are not well understood mechanistically. Here, MoNb12O33 (MNO) was calcined at two different temperatures to compare a defect-rich condition (MNO-800) with a proximal order-rich condition (MNO-900) as assessed through XRD, XANES, EXAFS, and STEM characterizations. Galvanostatically cycled lithium half cells of …

Genome Wide Association Study (Gwas) On Different Economic Traits And Epigenetic Stability Of Sweetpotato In Louisiana, Ajay Dhungana

LSU Doctoral Dissertations

Sweetpotato [Ipomoea batatas (L.) Lam] is a globally important food, feed, and industrial crop, yet its improvement is constrained by a complex hexaploid genome, clonal propagation, and susceptibility to multiple diseases. In Louisiana, production is threatened primarily by Fusarium oxysporum f. sp. batatas (Fusarium wilt) and Ceratocystis fimbriata (Black rot). Furthermore, the in vitro propagation methods essential for disease-free planting material and germplasm conservation can introduce epigenetic instability that undermines clonal fidelity. This dissertation integrates genome-wide association studies (GWAS), genotype by environment interaction (GEI) and DNA methylation profiling to dissect resistance mechanisms and assess epigenetic stability in Louisiana sweetpotato …

Curriculum For A Two Semester Calculus Course Specializing In Life Science And Data Science, Patrick Mcclain

LSU Master's Theses

Traditionally, introductory calculus has been designed for engineering and physics students, often leaving students majoring in data science or life sciences with a curriculum that lacks professional relevance and is overly reliant on problems that focus on computational fluency. This thesis proposes a two-semester sequence, called MATH 153X and MATH 154X, specifically tailored for the Louisiana State University (LSU) Dual Enrollment program and university-level data science and life sciences majors. By integrating modern computational tools—such as symbolic calculators and artificial intelligence (AI) tools—the proposed curriculum shifts the pedagogical focus from procedural symbolic manipulation toward conceptual literacy.

Through a series …

Comparison Of Sampling Methods For Estimation Of Aquatic Insect Diversity And Abundance Across Seasonal Gradients In A Southern U.S. River System, Albert Henry Gasperecz

LSU Master's Theses

Determination of benthic macroinvertebrate assemblage composition plays a vital role in assessment and management of lotic systems throughout the U.S. However, the validity of biomonitoring programs depends on accurate and precise measures of macroinvertebrate abundance, which in turn are dependent on sampling gears and protocols. The goal of this project was to assess how gear selection influences estimates of aquatic insect abundance and diversity, and how this selection can affect biological monitoring practices. I used 4 different gears in 3 southern Mississippi streams to aquatically and terrestrially collect aquatic insects seasonally throughout 2024. I identified and recorded all genera present …

Predator-Prey Responses Of The Clamworm Alitta Succinea To Direct Interaction With Crabs And Chemical Cues, Shyann Mcclain, Gloria M. Massamba N'Siala

Knowledge and Creativity Expo

Predator–prey interactions in marine benthic systems can have important indirect effects mediated through environmental signaling. Predators can reveal their presence through the release of chemical cues, influencing the activity and feeding rates of other potential prey through non-consumptive effects, which may ultimately shape energy allocation and survival in targeted populations. Along the Atlantic coast of the United States, predatory crabs overlap spatially with polychaete prey such as the clamworm Alitta succinea, creating consistent predation pressure. This study will set up the experimental system needed to examine the physiological responses of clamworms to both direct and indirect predation cues under controlled …

Seasonal Activity Pattern Of Ambrosia Beetles In Southeast Virginia, Umme H. Akter, Sajrim Chowdhury, Deborah A. Waller

Knowledge and Creativity Expo

Ambrosia beetles (Curculionidae: Scolytinae) are wood-boring insects that influence forest ecosystems through fungal symbioses, rapid host colonization, and invasive species dynamics. Despite their ecological importance, seasonal activity patterns remain poorly characterized in southeastern Virginia. This study integrates field trapping and statistical modeling to examine species-specific seasonal activity across two forested sites in Norfolk, Virginia. Beetles were monitored using ethanol and essential oil-baited bottle traps alongside ethanol-soaked bolt traps. Overall abundance peaked in April, indicating strong early-season emergence. Ethanol-baited traps captured 3-7 times more beetles than essential oil traps, and negative binomial generalized linear models confirmed bait type as a significant …

Protocol For Egg Mass Preservation And Its Efficacy In The Marine Annelids Ophryotrocha Labronica, Brennan Sinclair, Gloria Massamba-N'Siala

Knowledge and Creativity Expo

Accurate measurement of egg size is essential for understanding reproductive investment and developmental patterns in Ophryotrocha labronica, but standard protocols require imaging fresh eggs, limiting sample throughput. This study tested whether short‑term preservation in 4% formalin alters egg size and developed a workflow to support more efficient developmental observations. Egg masses were divided into subsamples and measured after 0, 2, and 7 days of preservation. Using a linear mixed‑effects model, we analyzed 224 eggs from 25 masses to evaluate the effect of preservation time while accounting for variation among clutches. Preservation time had no significant effect on egg size, …

Methods Of Inducing Cellular Senescence In Lung Fibroblasts, Sara Palega, Jennifer Q. Zhou, Shan Zhu, Yan Y. Sanders

Knowledge and Creativity Expo

Methods of Inducing Cellular Senescence in Lung Fibroblasts

Sara Palega¹, Jennifer Q Zhou², Shan Zhu², Yan Y Sanders²

¹VHS Biomedical Sciences PhD program, ²Department of Biomedical and Translational Sciences, Macon & Joan Brock Virginia Health Sciences at Old Dominion University (ODU)

Introduction: Idiopathic Pulmonary Fibrosis (IPF) is the most prevalent and severe of interstitial lung diseases. This chronic and progressive condition lacks treatment options and is ultimately fatal without a lung transplant. IPF arises from aberrant wound healing that leads to excessive collagen deposition, inflammation, and cystic alveolar growths which makes …

Methane Consumption Rates By Coastal Virginia Beach Microbes, James R. Bailey Ii

Knowledge and Creativity Expo

This study measures whether microbial communities in the shallow coastal waters of Virginia Beach are capable of consuming methane in the water column. Using methane enrichment incubations and gas chromatography, we found no measurable methane oxidation of our samples over multi-day periods. These results suggest that these coastal waters may act as net sources of atmospheric methane.

Trapping Ambrosia Beetles (Curculionidae) With Ethanol-Soaked Tree Bolts In Southeastern Virginia., Sajrim Chowdhury, Umme H. Akter, Deborah A. Waller

Knowledge and Creativity Expo

Native and invasive ambrosia beetles infest a wide variety of tree species in southeastern Virginia and cause significant damage. We investigated trapping ambrosia beetles by using ten different tree species as lures. One objective of the study was to determine the most effective lure for each species of ambrosia beetle related to tree species and the diameter of the bolt. Sections of tree limbs of two different diameters and 25cm in length were soaked in ethanol and hung from trees in several natural locations, both near water and away from water. Beetles attracted to the lures bored into the bolts …

Establishing Aquarium Systems And Care Protocols For Marine Invertebrates In The Department Of Biological Sciences At Odu, Magdalene R. Hamlin, Gloria Massamba N'Siala Ph.D.

Knowledge and Creativity Expo

Maintaining live animals in lab settings is useful for establishing a stock of specimens available for experimental studies without relying on continuous collection efforts. Previous aquarium systems utilized in the aquatic facility of the Department of Biological Sciences at ODU were suited for research on freshwater and marine vertebrates and were not designed for the care of marine invertebrates. This project aims to establish methods and protocols suitable for maintaining various marine invertebrates in a control laboratory setting. In the first stage of the project, the existing recirculation system and lab space will be reorganized and restructured to suit the …

The Influence Of Wind Speed On Phytoplankton Bloom Timing In Antarctica's 5 Regions, Majesti L. Cummings, Jessie S. Turners

Knowledge and Creativity Expo

Phytoplankton blooms form the foundation of the Antarctic marine food web and play a critical role in regional carbon cycling. Recent observations along the West Antarctic Peninsula indicate shifts in bloom phenology, the seasonal timing of biological events in nature, with accumulation seasons occurring later in recent decades. This study investigates how different variability in spring wind speed influences phytoplankton bloom start dates and peak dates across five ecological regions of the West Antarctic Peninsula.

Bloom timing is derived from 25 years of satellite-based chlorophyll-a observations, including annual start date and peak date. Wind speed data derived from atmospheric reanalysis …

Microplastics As Physical Hubs Amplifying Antiobiotic Resistance Under Mixed-Contaminant Selection In Wastewater Systems, Liyuan Hou

Spring Runoff Conference

Microplastics (MPs) are tiny plastic particles within the range of (0.1 mm to 5 mm) in size

Balancing Water Needs In Walker Basin, Peter Stanton

Spring Runoff Conference

Walker Lake 

Supported 50% of Mineral County economy 

Traditional homeland of Walker River Paiute Tribe (Agai Dicutta) 

World-class fishery

Annual Loon Festival

The Evolution Of Self-Awareness In Conscious Organisms, Robert A. Dielenberg

Journal of Conscious Evolution

Self-awareness in conscious organisms remains an enduring puzzle for philosophers and neuroscientists. This paper proposes a tripartite evolutionary model tracing its emergence through three sequential types: the sensory self (primitive egocentric, valence-tagged awareness of sensory states), the bodily self (external objectification of the body as a distinct entity, evidenced by mirror self-recognition in select species), and the cognitive self (internal objectification of the mind enabling recursive self-transformation). Adopting a monist framework, the model treats consciousness as the biological substrate of delayed neural apperception (the “Delayed Present”), within which selves emerge as increasingly sophisticated models. It distinguishes non-human metacognition—implicit, online regulation—from …

Fisheries Occasional Publication No. 151 - Response To 2025 External Review Of Integrated Stock Assessments For Key Wa Demersal Indicator Stocks, Brett Crisafulli, Emily A. Fisher, Matias Braccini, Rubie Evans-Powell, Fabian I. Trinnie, Ainslie Denham, S. A. Hesp

Fisheries Occasional Publications

Consistent with national trends, the Department of Primary Industries and Regional Development (DPIRD) is transitioning to the globally recognised Stock Synthesis (SS) platform to support more robust, transparent, and internationally aligned assessments. To ensure this transition remains scientifically sound, DPIRD commissioned an independent expert review in 2025, following a previous review in 2024. The 2025 review was conducted by Professor André Punt and focused on integrated models for three key WA fish stocks: red emperor in the Kimberley, WA dhufish in the southern West Coast Bioregion, and sandbar shark at the statewide level. This publication summarises the findings and recommendations …

Supplemental Data For Gulf Coast Walleye Edna Survey, Kevin W. Jones

Research Data

This file contains the full eDNA collection and amplification dataset for:

Jones, K.W. (2026). Development and application of an eDNA protocol for the detection of Gulf Coast Walleye (Sander vitreus) in Mississippi [Thesis submitted for publication]. Department of Wildlife, Fisheries, and Aquaculture, Mississippi State University.

Bio 230 - Microbiology, Sarah Moroianu

Open Educational Resources

This open educational resource (OER) syllabus is designed for BIO 230: Microbiology at Lehman College, City University of New York (CUNY), a single-semester introductory microbiology course for non-biology majors such as Nursing, Dietetics, Health Education, and Physical Education. The course reviews microbial structure, metabolism, genetics, and microbial ecology, with applied emphasis on infectious disease, antimicrobial drugs, host immune defenses, and microbial diseases. The syllabus aligns course content with the freely available OpenStax Microbiology textbook (Parker et al., CC BY 4.0) and reflects accessibility best practices consistent with CUNY guidelines.

Mitochondrial Transfer And Induced Ros As A Therapeutic Strategy In Idh2-Mutant Chondrosarcoma, Vegas R. Bedder, Caleb Wyckoff, Chris Osgood, Gavin A. Vasquez, Michael Stacey

Knowledge and Creativity Expo

Chondrosarcoma (CS) are common bone cancers that produce cartilaginous tumors and are extremely refractive to chemo-and-radiation therapies, leaving very limited treatment options. They contain mutations in the isocitrate dehydrogenase genes, IDH1 or IDH2. Either IDH1 or IDH2 mutations are present in individual tumors, but not both. They both convert alphaketoglutarate (αKG) into the potent oncometabolite D-2-hydroxyglutarate (D2HG). D2HG can be transported from the tumors to cells of the tumor microenvironment (TME) where it can alter metabolic and epigenetic profiles in recipient cells. The process of α-KG to D2HG conversion occurs in the cytoplasm of IDH1 mutant cells, and in the …

Recombinant Hagfish Intermediate Filament Proteins Enable Neural Culture Substrates That Promote Neurite Extension And Reduce Oxidative Stress, Justin Jones, Kristin Durrant

Browse all Datasets

This dataset supports the production, characterization, and biological validation of a novel recombinant hagfish intermediate filament (rHIF) protein functionalized with spider silk motifs (rHIF-alpha-GRGGL). The data demonstrates a scalable bioprocess resulting in a 7.76 g/L yield, high structural alpha-helicity (77.2%), and significant support for N2a cells.

Bacillus Subtilis Parb C-Terminal Lysine Residues Are Essential For Dimerization And In Vivo Function, Indicating Their Roles In Dna Sliding, Aleksey Aleshintsev, Lindsey E. Way, Ngoc Khanh Lai, Bianca Guerra, Paloma Dorantes, Lois Akosua Serwaa, Sealtiel Anulao, Miranda Molina, Xindan Wang, Hyeongjun Kim

Physics & Astronomy Faculty Publications

The broadly conserved ParB protein performs crucial functions in bacterial chromosome segregation and replication regulation. The cellular function of ParB requires it to dimerize, recognize parS DNA sequences, clamp on DNA, then slide to adjacent sequences through nonspecific DNA binding. How ParB coordinates nonspecific DNA binding and sliding remains elusive. Here, we combine multiple in vitro biophysical and computational tools and in vivo approaches to address this question. We found that five conserved lysine residues in the C-terminal domain (CTD) of ParB play distinct roles. While the two central rigid lysine residues provide the structural platform for the CTD, the …

Insights Into The Role Of Sox6 In The Developing Heart, Hannah Tarolli

MUSC Theses and Dissertations

Approximately 40,000 babies born each year in the U.S. have a congenital heart defect (CHD). However, only a small percentage of CHDs has a known genetic cause, highlighting the need for research surrounding heart development and the pathogenesis of CHDs. Heart development research aims to elucidate the precise coordination of gene expression and cell signaling with the goal of advancing prevention and treatment methods. During heart development, cells from several origins play a crucial role. This includes cells derived from the endocardium, epicardium, cardiac neural crest, and second heart field. Previous studies have revealed that the transcription factor, SOX9, is …

Determination Of High-Temperature Stress Tolerance In Strawberry Varieties Based On Physiological And Biochemical Mechanisms, Izhar Ullah, Hüsnü Demi̇rsoy, Musa Kavas, Kubi̇lay Yildirim, Leyla Demi̇rsoy

Turkish Journal of Botany

Rising global temperatures due to climate change threaten optimal strawberry growth and sustainable yields. Limited data exist on the physiological and biochemical responses of strawberry cultivars to high-temperature stress and their tolerance mechanisms. T his study evaluated the responses of 21 day-neutral and short-day strawberry cultivars to high-temperature stress and classified their tolerance levels using a novel weighted rating method. Plants were grown in 15-cm plastic pots (3:1:1 garden soil, peat, perlite) under open-field conditions until the 3–4 leaf stage and then transferred to climate chambers. After acclimatization at 25/15 °C (day/night) for 2 weeks, the plants were subjected to …

Functional Trait Structure In A Plant Community In Central Anatolian Steppe, Cansu Ülgen, Zeynep Ladi̇n Coşgun, Bariş Özüdoğru, Çağatay Tavşanoğlu

Turkish Journal of Botany

Exploring the trait structure of grassland plant communities enhances our understanding of how these communities will respond to climate change and disturbances such as herbivory. The trait structure of a plant community was investigated in the Central Anatolian steppe, an ecoregion with high biodiversity that has been largely unexplored in terms of plant functional ecology. Fifty plant species in the community were measured across 9 plant traits, including several leaf traits (leaf area, leaf dry matter content, specific leaf area, leaf thickness, and leaf nitrogen content), two seed traits (seed mass and seed shape), as well as the plant height …

Environmental Inequities In Conservation Policies And Practices: A Brief Overview, Monyai Chavers

Professional Agricultural Workers Journal

Conservation science and practice mirror racist notions of colonialism, prolonging a cycle in which policies and programs disregard land access. Many conservation leaders operate from a culture of land exclusion, focusing on nature to generate wealth, deeming the number of individuals removed from the commons as progress. By the turn of the 21^st Century, government conservation policies compensated private actors and groups for voluntarily adopting market-based mechanisms aimed at land conservation. Despite the emergence of various conservation programs, the data show that White Americans primarily benefit from federal conservation payments. However, the fragmentation of Black land ownership allows the …