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Biology Department Publications: 2023, Sam Lindgren

Biology Department Bibliographies

This document is a non-comprehensive list of publications made by graduate students, post-doctoral researchers, and faculty members in the Biology Department in 2023. It indexes those publications available through PubMed and Scopus, and serves as an archival record of the Department’s robust scholarly contributions.

Understanding And Addressing Statistics Anxiety, Hairui Liu

AI Assignment Library

This assignment is a critical first step in understanding the psychological barriers that students may face when learning statistics. It acknowledges the prevalence of statistics anxiety and its potential impact on academic success. The reflection is intended to be a safe space for students to express their concerns, with the ultimate goal of creating a more supportive and effective learning environment. By sharing their experiences, students contribute to the development of strategies that can help them and their peers navigate the challenges of statistics with greater confidence.

Investigating Theoretical Constructs Of Social Cognitive Theory As Working Mechanisms Of Web-Based Diet And Physical Activity Interventions Among Cancer Survivors, Harleen Kaur

All ETDs from UAB

Cancer survivors are a high-risk population with poor lifestyle behaviors and a higher prevalence of obesity, necessitating effective lifestyle interventions to promote weight management, consumption of a healthy diet, and increased physical activity. Recently, lifestyle interventions have evolved to web-based platforms that are easily accessible. However, there is a need to understand how web-based lifestyle interventions work, and who they work best for to maximize impact. Thus, the objective of this dissertation was to evaluate social cognitive theory (SCT) mechanisms (i.e., self-efficacy, social support, and perceived barriers) through which two web-based lifestyle interventions, DUET and AMPLIFY, mediate changes in diet, …

Impact Of Exercise Modalities On Quality Of Life And Performance Metrics In Breast Cancer Survivors, Shannon Anderson

All ETDs from UAB

Background: Advancements in research have caused the survival rate for breast cancer to increase making the population of breast cancer survivors (BCS) much larger than in previous decades. Breast cancer can have a lasting impression on a person’s quality of life (QoL) even after completing treatment. Breast cancer is also associated with various side effects as a result of treatment as well as comorbidities. Different types of exercise and physical activity have been shown to improve QoL as well as other health outcomes. Purpose: This study aimed to compare the effects of aerobic exercise versus flexibility and toning exercise on …

A Citizen Science Approach To Assess Management Of An Invasive Species, William Lester, Emily Kraus

Journal of Extension

Citizen science allows for broadening the scope of research by increasing data points and geographical scale. Here, Institute A and Institute B show that citizens utilized various outreach platforms to increase their knowledge of an invasive species the air potato vine, Dioscorea bulbifera, and its biological control agent the air potato beetle, Lilioceris cheni. Citizen scientists also contributed data on the distribution and establishment of the beetle, and reported on behavior change, and attitude toward the project. Valuable lessons were learned in designing surveys and training the citizens in order to increase the quality of their contributions.

Extension Impacts On Onion Ipm: Current Perspectives From The Industry, Gina Greenway, Brian Nault, Silvia Rondon, Stuart Reitz

Journal of Extension

An assessment was conducted to evaluate perceived risk from the most serious pests and diseases facing the allium industry and to identify practices that would improve adoption of integrated pest management (IPM). The survey was administered to growers attending annual onion production and management meetings in Oregon and New York. Results indicate that thrips and thrips-vectored Iris Yellow Spot Virus were perceived as a high-risk problem by 87% of respondents. Demonstrating the efficacy of IPM on a commercial scale and improving collaborative efforts between universities and growers were identified as high impact practices to improve adoption of IPM.

Adult Teaching Practices Of Exemplary Extension Agents, T. Grady Roberts, Amy Harder, Matt Benge

Journal of Extension

Teaching is an important part of an Extension agent’s duties; however, little is empirically understood about effective teaching practices in an Extension context. The purpose of this study was to explore the adult teaching practices of exemplary extension agents. Through a nomination process, seven agents in Florida were interviewed. The analysis revealed four themes: (a) approach to teaching adults, (b) awareness of learners, (c) planning, and (d) learning to teach. Each theme had several sub-themes. Recommendations for practice and additional research are provided.

Buzzworthy Messaging: Assessing Residents’ Perceptions Of Labels To Better Promote Pollinator Gardening, Colby J. Silvert, Laura A. Warner, Cody Gusto, John M. Diaz, Rachel E. Mallinger

Journal of Extension

Consumers appear more likely to purchase plants with labeling indicating pollinator-friendly production or high pollinator resource value. No standardized label for pollinator-supporting plants or landscape practices exists in the United States, which has proliferated the variety of labels used by the industry. This mixed-methods study aims to provide insight into residents’ preferred pollinator-related labelling for plants and landscape practices in order to help Extension professionals and green industry stakeholders improve outreach, marketing, and communications efforts. Findings suggest a butterfly-friendly label would be most effective for marketing while residents would accept and favorably perceive labels emphasizing either pollinator-friendly or bee-friendly attributes.

Cognition And Inflammation In Youth With Perinatal Hiv, Megan Niehaus, Julie Mannarino, Jacob Bolzenius, Tori Frerichs, Robert Paul

Undergraduate Research Symposium

Background: Perinatally acquired HIV (PHIV) remains a major global health challenge. Approximately 90% of the global population of PHIV reside in low- or middle-income countries (LMICs) where access to antiretroviral therapy (ART) remains incomplete, particularly for PHIV. With PHIV, the brain is exposed to the virus during critical periods of brain development without the immunological benefits from ART. Unlike adults with horizontally acquired HIV whose nadir CD4+ Tcell count is a strong correlate of cognitive difficulties that persist after sustained use of ART, cognitive symptoms among PHIV youth are independent of traditional HIV disease metrics. Prior studies indicate that PHIV …

Perilous Consequences Of Chemotherapy Induced Alopecia In Afflicted Cancer Survivors: A Comprehensive State Of The Art Review, Salma A. Fereig, Mona Gamal Arafa, Ghada Mamdouh Elzaafarany, Mona Mohamed Ahmed Abdelmottaleb, John Youshia

Pharmacy

Due to researchers’ great efforts during previous and current centuries to cure cancer, a remarkable increase in the number of cancer survivors has been observed. However, side effects of chemotherapeutic agents greatly affect the quality of life of cancer cases, usually referred to as cancer stigma, the most psychologically traumatizing of which is chemotherapy-induced alopecia (anagen effluvium). Unfortunately, there is no preventive protocol for chemotherapy-induced alopecia to date. The only suggested technique is vasoconstriction by scalp cooling during and after chemotherapy sessions to minimize the absorption of cytotoxic agents within the hair follicle area; a technique that is not very …

09.03.2024 Orsp Connect, Liz Williamson

ORED Newsletter

RED Talk

OpenScholar website opportunity

William Magee Institute for Student Wellbeing

Supporting Students’ Physical Activity Self-Efficacy Within High School Physical Education, Ken Murfay, Aaron Beighle, Heather Erwin, Erin Aiello, Sarah Pyszczynski

International Journal of Physical Activity and Health

Research examining physical activity (PA) is significant because of the known benefits of PA. Studying high school (HS) students is particularly important due to the consistent decline in PA as students age. One strategy to increase PA is to increase someone’s self-efficacy (confidence) to be physically active which is commonly positively associated with PA. Most of the research on how to support physical activity self-efficacy (PASE) comes from outside-of-school interventions with minimal literature on how to support students’ PASE within HS physical education (PE). This study attempted to identify and share practices that current HS PE teachers were implementing to …

Striatal Beat Frequency Interval Timing Model With Microgravity Stressor, Jason Michael Fitzgerald, Sorinel Oprisan

Journal of the South Carolina Academy of Science

The Striatal Beat Frequency (SBF) model of interval timing uses frontal cortex (FC) neural oscillations to record the state of the brain at the reinforcement time Tc during fixed interval (FI) procedures in the long-term memory (LMEM). The state of the FC oscillators at any given time is stored in a short-term memory (SMEM) buffer. The SBF model uses the spiny neurons of the basal ganglia (BG) as coincidence detectors to produce beats between the content of the SMEM and LMEM. Across multiple species that can perform interval timing, there are two invariant properties: (a) the timing is precise, and …

Effects Of Technique And Dummy Mass On Law Enforcement-Specific Body Drags: Testing And Training Implications, Matthew R. Moreno, J. Jay Dawes, Robin (Rob) Marc Orr, Joseph M. Dulla, Robert G. Lockie

International Journal of Exercise Science

International Journal of Exercise Science 17(4): 1235-1249, 2024. Current law enforcement body drag tests may use dummy masses that are underweight compared to current population norms. This study aimed to determine differences in 74.84-kg and 90.72-kg body drag times when performed with a standard (pick up and stand with dummy prior to dragging), adapted (incorporation of time to lift dummy to standing), and preferred (drag with any technique) technique. Forty-three (24 males, 19 females) physically-active, healthy civilians (surrogate population for police recruits) completed drags over 9.75 m with 74.84-kg and 90.72-kg dummies using the three techniques previously stated. A 2 …

Neurovascular Shifts, Sensory Sensitivity, And Pmdd In Autistic Women: Exploring Blood Flow Redirection, Mood Dysregulation, And Pain Tolerance During Menstruation, Piper Hutson, James Hutson

Faculty Scholarship

This article examines the relationship between Premenstrual Dysphoric Disorder (PMDD), neurovascular dynamics, and sensory sensitivities in autistic women during menstruation. The redirection of blood flow to the uterus during the menstrual cycle has been found to exacerbate cerebral perfusion deficits in neurodivergent individuals, particularly in the Prefrontal Cortex (PFC), which contributes to the mood dysregulation and emotional instability characteristic of PMDD. Autistic women, who often exhibit heightened sensory sensitivities, experience intensified discomfort during menstruation, as sensory overload and altered pain perception compound the emotional challenges of PMDD. These findings emphasize the need for neurodivergent-friendly menstrual products that mitigate both physical …

A Midwest Perspective On Biochar Integration In Extension, Blake C. Colclasure, Elizabeth Bose, Jack Dempsey, Taylor K. Ruth

Journal of Human Sciences and Extension

Biochar can be considered a climate-smart, agricultural soil amendment due to its ability to provide long-term storage of carbon. Research examining the impacts of biochar-enriched soils reported improved soil characteristics often leading to agricultural benefits, especially in nutrient-poor soils. Despite the potential use of biochar in the Midwest, United States, few studies have examined biochar in Extension. This study, guided by the Theory of Reasoned Action, used survey methodology to collect information on Midwest Extension agents’ (n = 125) knowledge, attitudes, and subjective normative beliefs toward biochar. These factors, along with agents’ demographics and perceptions toward sustainable soil amendments, were …

Environmental Contributions To Cognitive Development: The Role Of Cognitive Stimulation, Divyangana Rakesh, Katie A. Mclaughlin, Margaret Sheridan, Kathryn L. Humphreys, Maya L. Rosen

Neuroscience: Faculty Publications

Early environmental experiences influence children's cognitive and neural development. In particular, cognitive stimulation, defined as environmental inputs that engage the senses and provide learning opportunities for children, fosters acquisition of knowledge across various cognitive domains. Low levels of cognitive stimulation in early life may restrict learning opportunities, contributing to lasting consequences for neural development and later academic and occupational achievement. This review delves into the role of cognitive stimulation in neural development and related cognitive performance, available tools for measuring cognitive stimulation in various settings, and offers insights into future research directions. In addition, variability in cognitive stimulation, often linked …

Cascading Effects Of Assumption Violations In An Extension Program Development Model, Susan T. Guynn, Patrick Hiesl, Shari L. Rodriguez, Janet Steele

Journal of Human Sciences and Extension

The Cooperative Extension Service delivers informal educational programs that can help to improve the lives of citizens and communities. Planning, design, implementation, and evaluation are crucial considerations for Extension programs and serve as the foundation for the Extension Program Development Model. The Extension Program Development Model has underlying assumptions that may not be explicitly stated or apparent to Extension practitioners, but if the assumptions are violated, it can lead to cascading effects that impact the effectiveness of an Extension program. This paper will discuss the assumptions of the Extension Program Development Model and the potential impacts of assumption violations. We …

The Seattle Amyotrophic Lateral Sclerosis (Als) Patient Project Database: Observational, Longitudinal, Dyadic Characterization Of People With Als And Their Partners, Suzanne C. Segerstrom, Edward J. Kasarskis

Neurology Faculty Publications

Introduction: The median survival time in ALS is approximately 3 years, but survival times range from less than a year to more than 10 years and much variance in disease course remains to be explained. As is true for physical outcomes, there is considerable variance in QOL, which is influenced by psychological health, coping, and social support, among other psychosocial factors. The Seattle ALS Patient Project Database (SALSPPD) provides a unique opportunity for researchers to address established and novel hypotheses about disease progression and QOL in ALS.

Methods: The SALSPPD is a longitudinal dataset of people with ALS (n = …

Assessment Of Variants Of Organic-Based Rice Production Systems In Negros Occidental, Philippines, Cielo Luz C. Mondejar, Gerald E. Bello, Karla V. Canto, Chenille Kaye L. Galvan, June Nill F. Paclibar

The Philippine Agricultural Scientist

A survey was conducted to determine information needs and assess variants of organic rice-based production among rice farmers in Negros Occidental, Philippines. Survey data were gathered from 199 out of 400 identified organic rice practitioners in the province, which accounts for a > 95% confidence level and 5% of margin of error. Among the respondents, only 20.1% had organic certification from third-party representatives, and 42.2% can be classified under a low-input farming system. Some (21.1%) were in transition for certification or were farmers intending to go into organic certification with third-party representatives. The remaining (16.6%) used organic inputs but were not …

Panel Stacking Is A Threat To Consensus Statement Validity, Kasper P Kepp, Preben Aavitsland, Marcel Ballin, Francois Balloux, Stefan Baral, Kevin Bardosh, Howard Bauchner, Eran Bendavid, Raj Bhopal, Daniel T Blumstein, Paolo Boffetta, Florence Bourgeois, Adam Brufsky, Peter J Collignon, Sally Cripps, Ioana A Cristea, Nigel Curtis, Benjamin Djulbegovic, Oliver Faude, Maria Elena Flacco, Gordon H Guyatt, George Hajishengallis, Lars G Hemkens, Tammy Hoffmann, Ari R Joffe, Terry P Klassen, Despina Koletsi, Dimitrios P Kontoyiannis, Ellen Kuhl, Carlo La Vecchia, Tea Lallukka, John Lambris, Michael Levitt, Spyros Makridakis, Helena C Maltezou, Lamberto Manzoli, Ana Marusic, Clio Mavragani, David Moher, Ben W Mol, Taulant Muka, Florian Naudet, Paul W Noble, Anna Nordström, Peter Nordström, Nikolaos Pandis, Stefania Papatheodorou, Chirag J Patel, Irene Petersen, Stefan Pilz, Nikolaus Plesnila, Anne-Louise Ponsonby, Manuel A Rivas, Andrea Saltelli, Manuel Schabus, Michaéla C Schippers, Holger Schünemann, Marco Solmi, Andreas Stang, Hendrik Streeck, Joachim P Sturmberg, Lehana Thabane, Brett D Thombs, Athanasios Tsakris, Simon N Wood, John P A Ioannidis

Faculty, Staff and Student Publications

Consensus statements can be very influential in medicine and public health. Some of these statements use systematic evidence synthesis but others fail on this front. Many consensus statements use panels of experts to deduce perceived consensus through Delphi processes. We argue that stacking of panel members toward one particular position or narrative is a major threat, especially in absence of systematic evidence review. Stacking may involve financial conflicts of interest, but nonfinancial conflicts of strong advocacy can also cause major bias. Given their emerging importance, we describe here how such consensus statements may be misleading, by analyzing in depth a …

Automatic Vessel Attenuation Measurement For Quality Control Of Contrast-Enhanced Ct: Validation On The Portal Vein, Kevin Mccoy, Sujay Marisetty, Dominique Tan, Corey T Jensen, Jeffrey H Siewerdsen, Christine B Peterson, Moiz Ahmad

Faculty, Staff and Student Publications

Background: Adequate image enhancement of organs and blood vessels of interest is an important aspect of image quality in contrast-enhanced computed tomography (CT). There is a need for an objective method for evaluation of vessel contrast that can be automatically and systematically applied to large sets of CT exams.

Purpose: The purpose of this work was to develop a method to automatically segment and measure attenuation Hounsfield Unit (HU) in the portal vein (PV) in contrast-enhanced abdomen CT examinations.

Methods: Input CT images were processed by a vessel enhancing filter to determine candidate PV segmentations. Multiple machine learning (ML) classifiers …

Racialized Inequities In Live Birth After Cancer: A Population-Based Study Of 63,000 Female Adolescents And Young Adults With Cancer, Andrea C Betts, Michael E Roth, Karen Albritton, Sandi L Pruitt, Philip J Lupo, Jennifer S Wang, L Aubree Shay, Marlyn A Allicock, Caitlin C Murphy

Faculty, Staff and Student Publications

Introduction: Fertility after cancer is a top concern for adolescents and young adults with cancer (AYAs) (15-39 years old at diagnosis). The authors characterized live births after cancer by race and ethnicity ("race/ethnicity") in a population-based sample of female AYAs.

Methods: This study used Texas Cancer Registry data linked to birth certificates (1995-2016) to estimate cumulative incidence of live birth, based on first live birth after cancer, and compared differences by race/ethnicity. Proportional subdistribution hazards models were used to estimate associations between race/ethnicity and live birth, adjusted for diagnosis age, cancer type, stage, year, and prior live birth, overall and …

Competitive And Noncompetitive Credit Assignment To Reward Cues In The Lateral Orbitofrontal Cortex, Mihwa Kang

Dissertations, Theses, and Capstone Projects

This dissertation investigates the mechanisms underlying variations in credit assignment to reward cues, with a focus on the lateral orbitofrontal cortex (lOFC). The lOFC has long been implicated in signaling reward expectancies, with controversy as to whether it signals the economic value of future outcomes, their sensory features to guide behavior or both. However, whether the lOFC signals the relative (competition-dependent) or absolute (contiguity-dependent) credit of cues is unknown. To address this, I employed a combination of novel behavioral assays, in-vivo electrophysiological recordings and optogenetic stimulation in rats. In Chapter 2, I tested the suitability of a self-initiating variant of …

Resting-State Eeg Microstate Features For Major Depressive Disorder Classification, George M. V. Quinn

Dissertations, Theses, and Capstone Projects

Neuroimaging studies have revealed consistent abnormalities in functional connectivity within specific neural networks that may serve as biomarkers for major depressive disorder (MDD). It is important to find inexpensive, non-invasive techniques that target these biomarkers to make diagnosis easier and more objective. EEG microstates are quasi-stable potential topographies that are thought to reflect the quasi-stable network activity of the underlying neural generators. MDD has been shown to alter features of the four canonical EEG microstates (A, B, C, D) with some conflicting results. The most consistent network abnormalities in MDD are found in the anterior default mode network, and this …

Psychological Distress And Mental Health Care Utilization Among Black Survivors Of Adolescent And Young Adult Cancer, Eunju Choi, Amy M Berkman, Aryce Battle, Andrea C Betts, John M Salsman, Joel Milam, Clark R Andersen, Kimberly A Miller, Susan K Peterson, Qian Lu, Christabel K Cheung, J A Livingston, Michelle A T Hildebrandt, Susan K Parsons, David R Freyer, Michael E Roth

Faculty, Staff and Student Publications

Background: Survivors of adolescent and young adult (AYA) cancer experience significant psychological distress and encounter barriers to accessing mental health care. Few studies have investigated racial/ethnic disparities in psychological health outcomes among AYA survivors, and none have compared outcomes within a racially minoritized population.

Methods: National Health Interview Survey data (2010-2018) were analyzed that identified non-Hispanic Black (hereafter, Black) survivors of AYA cancer and age- and sex-matched Black noncancer controls. Sociodemographic factors, chronic health conditions, modifiable behaviors (smoking and alcohol use), and psychological outcomes were assessed with χ2 tests. Logistic regression models, adjusted for survey weights, were used to evaluate …

American Association Of Plastic Surgeons Consensus On Breast Implant-Associated Anaplastic Large-Cell Lymphoma, Mark W Clemens, Terence M Myckatyn, Arianna Di Napoli, Andrew L Feldman, Elaine S Jaffe, Cara L Haymaker, Steven M Horwitz, Kelly K Hunt, Marshall E Kadin, Colleen M Mccarthy, Roberto N Miranda, H Miles Prince, Fabio Santanelli Di Pompeo, Sari D Holmes, Linda G Phillips

Faculty, Staff and Student Publications

BACKGROUND: In the absence of high-quality evidence, there is a need for guidelines and multidisciplinary consensus recommendations on breast implant-associated anaplastic large-cell lymphoma (BIA-ALCL). The purpose of this expert consensus conference was to evaluate the existing evidence regarding the diagnosis and management of BIA-ALCL caused by textured implants. This article aims to provide evidence-based recommendations regarding the management and prevention of BIA-ALCL.

METHODS: A comprehensive search was conducted in the MEDLINE, Cochrane Library, and Embase databases, and supplemented by manual searches of relevant English-language articles and "related articles" sections. Studies focusing on breast surgery and lymphoma associated with breast implants …

Meconium: A Potential Means To Predicting Later-Life Cognition, Leah Duran

Dissertations, Theses, and Capstone Projects

Maternal perinatal stress is a commonly experienced, yet chronically undiagnosed condition (CDC, 2010). Literature has suggested that perinatal stress exposure has long lasting implications of the developing child both physically and mentally (Behrman et al., 2007; Hobel et al., 2008; Bowman et al., 2004; Polanska et al., 2017; Van de Bergh et. al, 2020). The use of meconium in the clinical setting has become one that serves a purpose of detection in medical conditions like in utero drug exposure. Using meconium as a predictor for brain behavior, however, is still an emerging concept in the literature. It is quickly gaining …

Response-Adapted Ultralow-Dose Radiation Therapy For Orbital Indolent B-Cell Lymphoma: A Phase 2 Nonrandomized Controlled Trial, Chelsea C Pinnix, Bouthaina S Dabaja, Jillian R Gunther, Penny Q Fang, Susan Y Wu, Loretta J Nastoupil, Paolo Strati, Ranjit Nair, Sairah Ahmed, Raphael Steiner, Jason Westin, Sattva Neelapu, Maria A Rodriguez, Hun Ju Lee, Michael Wang, Christopher Flowers, Lei Feng, Bita Esmaeli

Faculty, Staff and Student Publications

Importance: Radiation therapy to doses of 24 to 36 Gy is currently used to treat indolent B-cell lymphoma of the ocular adnexa; however, ocular adverse effects are common.

Objective: To determine if a response-adapted radiation therapy strategy will result in excellent disease outcomes while reducing orbital morbidity.

Design, setting, and participants: This single-institution, phase 2 prospective nonrandomized controlled trial of a response-adapted strategy involved 50 evaluable patients with stage I to IV indolent B-cell lymphoma of the ocular adnexa enrolled between July 2015 and January 2021. This treatment approach was also retrospectively evaluated with a separate 55-patient cohort treated between …

A Potential Role For Magi-1 In The Bi-Directional Relationship Between Major Depressive Disorder And Cardiovascular Disease, Priyanka Banerjee, Khanh Chau, Sivareddy Kotla, Eleanor L Davis, Estefani Berrios Turcios, Shengyu Li, Zhang Pengzhi, Guangyu Wang, Gopi Krishna Kolluru, Abhishek Jain, John P Cooke, Junichi Abe, Nhat-Tu Le

Faculty, Staff and Student Publications

Purpose of review: Major Depressive Disorder (MDD) is characterized by persistent symptoms such as fatigue, loss of interest in activities, feelings of sadness and worthlessness. MDD often coexist with cardiovascular disease (CVD), yet the precise link between these conditions remains unclear. This review explores factors underlying the development of MDD and CVD, including genetic, epigenetic, platelet activation, inflammation, hypothalamic-pituitary-adrenal (HPA) axis activation, endothelial cell (EC) dysfunction, and blood-brain barrier (BBB) disruption.

Recent findings: Single nucleotide polymorphisms (SNPs) in the membrane-associated guanylate kinase WW and PDZ domain-containing protein 1 (MAGI-1) are associated with neuroticism and psychiatric disorders including MDD. SNPs in …