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Metabolite Analysis To Understand Factors Limiting Microbial Fermentation At High Substrate Concentrations, Bishal D. Sharma

Dartmouth College Ph.D Dissertations

Clostridium thermocellum, a thermophilic anaerobic bacterium, holds promise as a biocatalyst for conversion of lignocellulosic biomass into biofuels. This microbe has been subjected to various metabolic engineering strategies, including the deletion of genes encoding secondary fermentation products such as H₂, formate, acetate, and lactate, as well as the expression of heterologous genes to redirect carbon flux toward ethanol production. Despite these efforts, achieving economically viable ethanol titers remains a challenge. We hypothesized that studying how intracellular metabolite concentrations change as fermentation stops could reveal metabolic bottlenecks or regulatory mechanisms limiting ethanol production at high titers. However, metabolomics studies at …

Ai Beliefs And Practices In Community College Classrooms, Julie Eng, Heather Umphlett, Jocelyn Gilchrist, Alicia Howell, Mary Ann Howell, Wendy Miller-Edwards, Laurel Pope

Inquiry: The Journal of the Virginia Community Colleges

The country, the Commonwealth of Virginia, and Virginia Community College System initiatives all promote generative AI within education. It is a topic of great concern and interest for higher education instructors, yet at the same time many faculty members feel uncertain about effectively integrating it into class material. To further add pressure to the AI explosion, community colleges particularly face a responsibility to prepare their students for success in this new AI-focused environment. In this article, seven faculty members from Camp Community College discuss the implications of generative AI programs, including subscriptions and chatbots, within their particular courses and how …

The Effect Of Weed Control Using Herbicide On Soil Bacteria, Growth, And Yield Of Sweet Corn, Lafi Na'imatul Bayyinah, Purwanto, Risqa Naila Khusna Syarifah, Rama Adi Pratama, Ida Widiyawati, Hendra

Jurnal Kultivasi

Weeds are managed by herbicides, but this can reduce the abundance of soil bacteria. This research aimed to determine the effect of active compounds of herbicides on weeds, the abundance of soil bacteria, growth and yield of sweet corn. The experiment was conducted from June to October 2023 in the fields and Laboratory of Agronomy and Horticulture, Universitas Jenderal Soedirman, Purwokerto. A randomized block design was used, consisting of eight treatments and four replications. The treatments included control (H0); weeding (H1); paraquat (H2); glyphosate (H3); paraquat, atrazine, mesotrione (H4); glyphosate, atrazine, mesotrione (H5); paraquat, atrazine, mesotrione, nicosulfuron (H6); and glyphosate, …

Effect Of Meta-Topolin And Kinetin At Various Concentrations On Shoot Multiplication In White Turmeric (Curcuma Zedoaria Rosc.), Murgayanti, Annisa Nanda Nur Azizah, Anne Nuraini, Erni Suminar, Syariful Mubarok

Jurnal Kultivasi

White turmeric is a medicinal plant widely used to treat various diseases. The limited availability of white turmeric seedlings is influenced by the scarcity of quality seeds due to the long dormancy of the rhizomes and the high incidence of pathogen attacks. Tissue culture techniques are one alternative to address the problem of white turmeric seedling availability. This study aims to determine the best concentrations of meta-topolin and kinetin for in vitro shoot multiplication of white turmeric. The research was conducted from January to June 2022 at the tissue culture laboratory, Faculty of Agriculture, Universitas Padjadjaran. This study used a …

Tobacco Smoke Exposure Is A Driver Of Altered Oxidative Stress Response And Immunity In Head And Neck Cancer, Yang Li, Pedram Yadollahi, Fonma N Essien, Vasanta Putluri, Chandra Shekar R Ambati, Karthik Reddy Kami Reddy, Abu Hena Mostafa Kamal, Nagireddy Putluri, Lama M Abdurrahman, Maria E Ruiz Echartea, Keenan J Ernste, Akshar J Trivedi, Jonathan Vazquez-Perez, William H Hudson, William K Decker, Rutulkumar Patel, Abdullah A Osman, Farrah Kheradmand, Stephen Y Lai, Jeffrey N Myers, Heath D Skinner, Cristian Coarfa, Kwangwon Lee, Antrix Jain, Anna Malovannaya, Mitchell J Frederick, Vlad C Sandulache

Faculty, Staff and Student Publications

Background: Exposomes are critical drivers of carcinogenesis. However, how they modulate tumor behavior remains unclear. Extensive clinical data show cigarette smoke to be a key exposome that promotes aggressive tumors, higher rates of metastasis, reduced response to chemoradiotherapy, and suppressed anti-tumor immunity. We sought to determine whether smoke itself can modulate aggressive tumor behavior in head and neck squamous cell carcinoma (HNSCC) through reprogramming of the cellular reductive state.

Methods: Using established human and murine HNSCC cell lines and syngeneic mouse models, we utilized conventional western blotting, steady state and flux metabolomics, RNA sequencing, quantitative proteomics and flow cytometry to …

Highly Regenerable Magnetic Sulfonated Chitosan Crosslinked With Glutaraldehyde Composite Beads (Iron Sand/Naso3-Chi-G) For Aqueous Mercury Removal, Fathurrahmi Fathurrahmi, Rahmi Rahmi, Lelifajri Lelifajri, Anggun Sixthia Wulan Ayu, Muhammad Iqhrammullah

Karbala International Journal of Modern Science

We developed a novel adsorbent from sulfonated, glutaraldehyde-crosslinked chitosan embedded with magnetic iron sand. The adsorbent was synthesized through a two-step process: (1) sulfonation with N(SO₃Na)₃ to introduce sulfonate groups, and (2) crosslinking with glutaraldehyde to enhance structural stability. The optimal formulation, containing 43.5% iron sand and crosslinked with 0.17 M glutaraldehyde, exhibited the highest Hg²⁺ adsorption capacity (30.74 mg/g) at pH 3. The adsorbents were characterized using Scanning Electron Microscopy (SEM), Fourier transform infra-red spectroscopic (FT-IR), and X-ray diffraction (XRD) techniques. Adsorption equilibrium was achieved within 60 minutes, and isotherm modeling showed that the process followed the Freundlich model …

Effects Of Treatment With Af38469 On Localization Of Lysosomal Proteins In Batten Disease In Vitro Models, Ainslie Robinson, Mitchell Rechtzigel, Hannah Leppert, Joelle Anderson, Jon Brudvig, Jill Weimer

Celebration of Research

Batten disease is a rare, pediatric, neurological disorder that is the result of a mutation in one of 13 CLN genes. Batten disease has an incidence rate of 1 out of 100,000 births worldwide with CLN3 being the most common form. Being a genetic disorder, gene therapy is an ideal treatment approach for Batten disease. Diagnosis of disease, however, typically does not occur until disease has progressed, when the ideal therapeutic window for gene therapy has already passed. Additionally, the durability of viral-delivered gene therapy over time is poorly understood. AF38469, a small molecule inhibitor of sortilin, was developed for …

Modeling The Cystic Fibrosis Intestinal Environment To Study Microbial Interactions, Kaitlyn Emma Barrack

Dartmouth College Ph.D Dissertations

The microbiome of the cystic fibrosis (CF) intestine is altered significantly in structure and function beginning in early life. Key taxa associated with health, digestion and immune-training are reduced in abundance, including but not limited to Bacteroides, Faecalibacterium, Akkermansia, Ruminococcus and other short-chain fatty acid producers. Conversely, there is an expansion of microbes with pathogenic potential, such as Escherichia, Veillonella, Pseudomonas and Staphylococcus. The shifts in microbiota composition direct community-wide changes with differences in beta diversity by genotype, whereby children with CF (cwCF) exhibit significantly different gut microbial compositions compared to nonCF children. Additionally, shifts in microbiota structure often …

Elucidating The Antibiofilm Characteristics Of A Carbon Infiltrated Carbon Nanotube Surface And A Copper-Coated Carbon Infiltrated Carbon Nanotube Surface, Lucy Christena Bowden

Theses and Dissertations

Post-surgical implant-associated infections cause considerable patient morbidity and mortality. These infections are often caused by biofilm-forming bacteria such as Staphylococcus aureus and Pseudomonas aeruginosa. Bacterial biofilms are resistant to immune clearance and are a reservoir of antibiotic resistance. Implant materials that resist bacterial colonization may be able to improve patient outcomes. Carbon infiltrated carbon nanotubes (CICNT) are a potential surface modification for medical implants. The work presented in this dissertation focuses on characterizing the antibiofilm effect of the CICNT surface, better understanding its mechanism of action, and characterizing the enhanced antibiofilm effect of a copper-coated CICNT surface. S. aureus biofilms …

Computational Sensitivity Evaluation Of Ultrasound Neuromodulation Resolution To Brain Tissue Sound Speed With Robust Beamforming, Boqiang Fan, Wayne Goodman, Sameer A Sheth, Richard R Bouchard, Behnaam Aazhang

Faculty, Staff and Student Publications

Low-intensity focused ultrasound (LIFU) neuromodulation requires precise targeting and high resolution enabled by phased array transducers and beamforming. However, focusing optimization usually relies on phantom measurements or simulations with inaccurate acoustic properties to degrade neuromodulation resolution. Therefore, this work analyzes the sensitivity of neuromodulation resolution, measured by off-target activation area (OTAA), to brain tissue sound speed. A Robust Optimal Resolution (ROR) beamforming method is proposed to minimize the worst-case OTAA with restricted sound speed inaccuracy and propagation information estimated with deviated sound speed. The propagation estimation model utilizes equivalent source method (ESM) to map sound field between different acoustic parameter …

Chronic Viral Mimicry Induction Following P53 Loss Promotes Immune Evasion, Charles A Ishak, Sajid A Marhon, Naïri Tchrakian, Anjelica Hodgson, Helen Loo Yau, Isabela M Gonzaga, Melanie Peralta, Ilinca M Lungu, Stephanie Gomez, Sheng-Ben Liang, Shu Yi Shen, Raymond Chen, Jocelyn Chen, Biji Chatterjee, Kevin N Wanniarachchi, Junwoo Lee, Nicholas Zehrbach, Amir Hosseini, Parinaz Mehdipour, Siyu Sun, Alexander Solovyov, Ilias Ettayebi, Kyle E Francis, Aobo He, Taiyi Wu, Shengrui Feng, Tiago Da Silva Medina, Felipe Campos De Almeida, Jane Bayani, Jason Li, Spencer Macdonald, Yadong Wang, Sarah S Garcia, Elisa Arthofer, Noor Diab, Aneil Srivastava, Paul Tran Austin, Peter J B Sabatini, Benjamin D Greenbaum, Catherine A O'Brien, Trevor G Shepherd, Ming Sound Tsao, Katherine B Chiappinelli, Amit M Oza, Blaise A Clarke, Robert Rottapel, Stephanie Lheureux, Daniel D De Carvalho

Faculty, Staff and Student Publications

Epigenetic therapies facilitate transcription of immunogenic repetitive elements that cull cancer cells through ‘viral mimicry’ responses. Paradoxically, cancer-initiating events also facilitate transcription of repetitive elements. Contributions of repetitive element transcription towards cancer initiation, and the mechanisms by which cancer cells evade lethal viral mimicry responses during tumor initiation remain poorly understood. In this report, we characterize premalignant lesions of the fallopian tube along with syngeneic epithelial ovarian cancer models to explore the earliest events of tumorigenesis following loss of the p53 tumor suppressor protein. We report that p53 loss permits transcription of immunogenic repetitive elements and chronic viral mimicry activation …

Combining Checkpoint Therapy And Il-6 Receptor Inhibition In Non-Small Cell Lung Cancer, Sruti Sivan, Joel L. Berry, Aakash Desai, James M. Donahue, Jessy S. Deshane, Kayla F. Goliwas

Expo Student Presentations

2025 Spring Expo Poster Presentation

• Biological & Life Sciences

2025- The Twenty-Ninth Annual Symposium Of Student Scholars

Symposium of Student Scholars Program Books

The full program book from the 29th Annual Symposium of Student Scholars, held on April 16-18, 2025. Includes abstracts from the presentations and posters.

Strategies Of Animal Rescue Organizations In Agadir, Morocco: Addressing Cultural, Biological, And Government Challenges, Jacey Lynn Ramos

Morocco: Human Rights, Social Justice, and Cultural Transformation

Animal rescue organizations in Agadir, Morocco, play a critical role in confronting the intersecting challenges of stray animal overpopulation, zoonotic disease risks, and insufficient government support. This research examines how these organizations respond to cultural perspectives, public health concerns, and state-endorsed culling policies through a combination of field observation, social media analysis, and interviews. Focusing on two major NGOs (Non- Government Organizations) including Sunshine Animal Refuge Agadir (SARA) and Morocco Animal Aid (MAA), the study compares their outreach strategies, operational transparency, and organizational effectiveness. Findings reveal that while SARA offers a structured, humane model centered on TNVR (Trap-Neuter-Vaccinate-Return) and community …

Toward Ar Visualization Of The Fluid-Mosaic Model Of The Cell Membrane, Yoonwoo Lee, Allison Ost, Junghyuk Lee, Krisztina Z. Bencze

SACAD: Scholarly Activities

Background: During the first semester of biochemistry experience, students focus on learning the structure and function of biomolecules: carbohydrates, lipids, proteins, and nucleic acids. Visualizing these structures and understanding interactions between molecules helps students better understand biological function. A variety 3D visualization tools are available, ex. PyMol, Chimera, Avogadro, Blender. Within the past decade, Augmented Reality (AR) and Virtual Reality (VR) applications gained more popularity. VR with its immersive visual experience is more sought-after, but the higher cost and the need for headset creates limitations in the classroom. AR visualizations are cheaper and more accessible, several publications report successful implementation …

Justicia Ambiental Y Extractivismo: Un Análisis Del Conflicto Petrolero Offshore En Mar Del Plata, Lily Hui

Argentina: Social Movements and Human Rights

No abstract provided.

An Examination Of Ambulatory Care Code Specificity Utilization In Icd-10-Cm Compared To Icd-9-Cm: Implications For Icd-11 Implementation, Susan H Fenton, Cassandra Ciminello, Vickie M Mays, Mary H Stanfill, Valerie Watzlaf

Faculty, Staff and Student Publications

Objective: The ICD-10-CM classification system contains more specificity than its predecessor ICD-9-CM. A stated reason for transitioning to ICD-10-CM was to increase the availability of detailed data. This study aims to determine whether the increased specificity contained in ICD-10-CM is utilized in the ambulatory care setting and inform an evidence-based approach to evaluate ICD-11 content for implementation planning in the United States.

Materials and methods: Diagnosis codes and text descriptions were extracted from a 25% random sample of the IQVIA Ambulatory EMR-US database for 2014 (ICD-9-CM, n = 14 327 155) and 2019 (ICD-10-CM, n = 13 062 900). Code …

Focal Adhesion Genes And Proteins Are Differentially Expressed Across Cell Types In Down Syndrome, Brian Yoon

Senior Theses

Down syndrome (DS), caused by an extra copy of chromosome 21, leads to widespread gene expression changes through mechanisms such as transcriptional dysregulation and altered protein interactions. These disruptions contribute to a range of clinical features, including impaired wound healing, immune dysfunction, and neurodevelopmental abnormalities. This study focused on how DS affects fibroblast morphology and motility—processes critical for tissue repair and brain development. Using quantitative immunocytochemistry and image analysis, we found that DS fibroblasts displayed a broader, less polarized shape, with increased cell perimeter and reduced aspect ratio. However, levels of key adhesion proteins like vinculin, FAK, and β-actin were …

Host P53 Expression During C. Parvum Infection…Does The Virus Play A Role?, Jasdeep Kaur Dhanoa

Biochemistry and Molecular Biology

C. parvum infection induces significant host cellular stress responses, particularly through the modulation of p53 expression underscoring its potential involvement in gastrointestinal malignancies. Understanding these mechanisms is crucial for developing targeted therapeutic interventions. This study investigated the effects of C. parvum infection on host p53 dynamics in HCT-8 cells and assessed the impact of antiviral agents Lamivudine and Amantadine on the virus CSpV1 present within the parasite C. parvum. Further, the study focuses on whether the p53 effect changes with the presence or absence of CSpV1. The p53 assay results showed a constant increase in p53 activity after infection of …

Combination Of Hdac And Fyn Inhibitors In Synovial Sarcoma, Kyra Parker

Theses

The SS18-SSX fusion protein is an oncogenic driver in synovial sarcoma. At the molecular level, SS18-SSX functions as both an activator and a repressor to coordinate transcription of different genes responsible for tumorigenesis. Here, we identify the proto-oncogene FYN as a new SS18-SSX target gene and examine its relation to synovial sarcoma therapy. FYN is a tyrosine kinase that promotes cancer growth, metastasis and therapeutic resistance, but SS18-SSX appears to negatively regulate FYN expression in synovial sarcoma cells. Using both genetic and histone deacetylase inhibitor (HDACi)-based pharmacologic approaches, we show that suppression of SS18-SSX leads to FYN reactivation. In support …

Assessing Bioactivity Of Green Leaf Volatiles In Various Plant Systems, Fallon S. Tomlin

Senior Theses

Green leaf volatiles (GLVs) are chemical compounds essential in plant communication. Plants emit these volatiles due to abiotic and biotic stressors and, when perceived, these GLVs activate defense responses. Though GLVs play an important role in plant survival, it is still unknown where they localize, how they are perceived, and what structural factors influence perception. To elucidate these structural determinants, we tested the bioactivity of (Z)-3-fatty alcohols with four to nine carbons. Through root growth inhibition assays with tomato (Solanum peruvianum) seedlings, we found that (Z)-3-octenol and (Z)-3-nonenol were more bioactive than (Z)-3 hexenol and (Z)-3-heptenol. Thus, higher bioactivity was …

Creatine Supplementation Is Safe, Beneficial Throughout The Lifespan, And Should Not Be Restricted, Richard Kreider, Andrew Jagim, Jose Antonio, Douglas Kalman, Chad Kerksick, Jeffrey R. Stout, Robert Wildman, Rick Collins, Diego A. Bonilla

Faculty Scholarship

As researchers investigating creatine supplementation, we have become increasingly concerned about reports that government agencies are attempting to restrict the sale of dietary supplements, including dietary supplements containing creatine, to children and adolescents. Creatine is a naturally occurring compound found in every cell in the human body that plays a critical role in cellular metabolism. The daily turnover of creatine is about 2–4 grams/day, depending on muscle mass and physical activity levels (1, 2). About half of the daily need for creatine is synthesized in the body from amino acids (arginine, glycine, methionine) and stored as free creatine or phosphocreatine …

Nitrogen Processes Within Tropical Mangroves In Australia, M. F. Adame, N. Iram, J. N. Gamboa-Cutz, P. Masque

Research outputs 2022 to 2026

Coastal wetlands have long been identified as ecosystems that can ameliorate N inputs into the ocean. The processes associated with N uptake, transformation, and losses are relatively well understood for temperate wetlands; however, information on tropical wetlands is scarce. In this study, we conducted a whole ecosystem approach to measure N processes within tropical mangroves in the Moresby estuary in northeast Australia. We measured N stocks (trees and soils), inputs from sedimentation, fixation, and accumulation as woody biomass, and outputs through denitrification, anammox, and soil respiration (N2O emissions). Potential denitrification was detected along anammox (average, min-max) at 883 (485–1,450) gN …

Louisiana Agricultural Magazine, Spring 2025

Louisiana Agriculture

Growing fruits and pecans is a part of Louisiana’s agricultural heritage. Citrus trees have been planted here for three centuries, and the state is famous for strawberries. Pecans and mayhaws are native to the state, and they are beloved by Louisianans. Some of these fruits have become industries worth millions of dollars, while others have become popular for home production.

This issue of Louisiana Agriculture focuses on the efforts of LSU AgCenter Extension experts working to foster home fruit production and support the fruit and pecan industry in Louisiana. Through their research and extension programs, they provide homeowners and commercial …

Adipocyte-Derived Cchamide-1, Eiger, Growth-Blocking Peptide 3, And Unpaired 2 Regulate Drosophila Melanogaster Oogenesis, Chad Simmons, Isaiah Williams, Tancia Bradshaw, Alissa R. Armstrong

Faculty Publications

In addition to energy storage, adipose tissue communication to other organs plays a key role in regulating organismal physiology. While the link between adipose tissue dysfunction and pathophysiology, including diabetes, chronic inflammation, and infertility, is clear, the molecular mechanisms that underlie these associations have not been fully described. We use Drosophila melanogaster as a model to better understand how adipose tissue communicates to the ovary. In this study, we utilized D. melanogaster’s robust genetic toolkit to examine the role of five adipokines known to control larval growth during development, CCHamide-1, CCHamide-2, eiger, Growth-blocking peptide 3, and unpaired 2 in regulating …

Barreras Y Facilitadores De La Atención Centrada En La Familia En Las Unidades De Neonatología Y Pediatría De Buenos Aires, Argentina, Isabel Estes

Argentina: Public Health in Urban Environments

Este informe busca explorar el concepto de la atención centrada en la familia. Es un fenómeno relativamente nuevo que tiene el objetivo de mejorar el estatus de un paciente usando la familia en el contexto de la promoción de la salud. A partir de un diseño exploratorio y cualitativo, se realizaron siete entrevistas a médicos, de las especialidades de pediatría y neonatología, en Buenos Aires en dos hospitales: El Hospital El Cruce en Florencio Varela y El Sanatorio de La Trinidad en Palermo. Este informe no funciona como una comparación entre estas dos instituciones ni los médicos que trabajan dentro …

Outreach & Dna-Based Monitoring Facilitate 3-Fold Reduction In Seafood Mislabeling In Los Angeles Over 10 Years, Demian A. Willette, Kelli Andrade, Ben Fitzpatrick, Kesterlyn Wilson

Biology Faculty Works

Awareness and intervention can reduce fraudulent labeling in seafood. Using a 10-year longitudinal study approach, DNA-based monitoring data reveals a lower sushi mislabeling in Los Angeles restaurants over time. This is in part attributed to implemented recommendations by restaurants of a local academia-industry-government outreach initiative launched in 2018, The Los Angeles Seafood Monitoring Project. We found mislabeling was 3-fold lower among project-partnering restaurants than other restaurants. This difference was statistically significant, illustrating the combination of project partnering and implementation of recommendations was most impactful on reducing mislabeling rates. Lastly, the study period includes the COVID19 global pandemic, which additional monitoring …

Vitamin A Fortification: Key Factors And Considerations For Effective Implementation, Joohun Han, Alvaro Durand-Morat, Khondoker Abdul Mottaleb

Agricultural Economics and Agribusiness Faculty Publications and Presentations

Vitamin A fortification plays a crucial role in achieving long-term economic development in developing countries by supporting the growth and development of human capital. While fortification programs involve a range of nutritional, agricultural, economic, and political considerations, there is a lack of a comprehensive overview of the topic in the literature. Our review highlights the importance of holistic approach in designing fortification programs: the effective program should consider (a) the agronomic, economic, and administrative capability of the target regions in regard of fortification method and vehicle to maximize effectiveness; (b) strategies to ensure the producers' and consumers' adoption to enhance …

Food For Thought: The Impact Of The Gut-Brain Axis On Mental Health, Emily S. Miiller

Honors Thesis

Research regarding the role of the human microbiome has grown over the years as professionals develop a better understanding of the gut-brain axis. New studies and expanding knowledge on the relationship between the nervous system and gut microbiome promote a deeper understanding of the impact of diet on mental health. Diet plays a crucial role in maintaining a healthy balance between the gut and the brain. Incorporating nutritional modulators, such as probiotics, prebiotics, and vitamins, is crucial for supporting the gut-brain axis by influencing neurotransmitter production, managing inflammation, and promoting the growth of beneficial gut bacteria. On the other hand, …

Inactivation Of E. Faecium Nrrl B-2354 In Whole Black Pepper By Fluidization With Hydrogen Peroxide Vapor, Daniela Segura

Department of Food Science and Technology: Master of Science with Project Option

This study evaluated Enterococcus faecium NRRL B-2354 as a surrogate for Salmonella inactivation in black peppercorns treated with hydrogen peroxide (HP) vapor via fluidization. The selected parameter for dwell temperature was 60ºC for 60 minutes. The reduction of both Salmonella and E. faecium, along with changes in water activity, color, and residual hydrogen peroxide, were measured before, immediately after treatment and at 24 and 48 hours post-treatment. Results showed that E. faecium exhibited a significantly greater reduction (4.63 ± 0.55 log CFU/g) compared to Salmonella (2.94 ± 0.16 log CFU/g) (p < 0.05), making E. faecium unsuitable as …