Digital Commons Network^™

Isolation And Characterization Of Siderophore(S) From Pseudomonas Mosselii, Casey J. Stophel

Electronic Theses and Dissertations

Iron is essential for growth of most microorganisms. It functions as an important cofactor in many important biological processes. However, iron found in soil is rendered insoluble and unavailable to microorganisms for use. To overcome this, many bacterial species produce siderophores, a small organic molecule that has high affinity for iron. Siderophores allow for bacterial cells to obtain otherwise insoluble iron. Pseudomonas mosselii, a Gram negative bacterium, was isolated from a local soil sample. P. mosselii was found to produce siderophore(s) under iron restricted environment, however, they have not been characterized. Therefore, it was of interest to isolate, purify and …

Orchestrated Architecture Dismantling: Borrelia Burgdorferi’S Coordinated Destruction Of Adaptive Immune Responses, Craig A. Land

Electronic Theses and Dissertations

Borrelia burgdorferi represents the most prevalent vector-borne bacteria in North America, affecting ~476,000 Americans annually yet persisting despite robust immune responses. This project reveals spirochetes target adaptive immunity through coordinated lymphatic colonization and precision immune dysregulation.

Using comparative host models (C57BL/6 vs. reservoir Peromyscus leucopus), we demonstrate lymph node colonization within 48-hours, with spirochetes exploiting LYVE-1-positive lymphatic structures as dissemination highways while avoiding the interior of follicular regions. Critically, we identify targeted CD4+ T-cell elimination in germinal center border zones at 21-DPI, precisely when these cells should be coordinating protective immunity. Concurrent upregulation of inhibitory receptor CD32b creates molecular …

Improved Autofluorescence Lifetime Decay Analysis For Identification Of Cellular Autofluorescence Biomarkers For Label-Free, Single-Cell Assessment Of Mitochondrial Membrane Potential, Olivia Isabel Kolenc

Graduate Theses and Dissertations

Optical imaging of metabolism using the autofluorescence of the metabolic cofactors NADH, NADPH, and FAD has a wide range of sensitivities and the capability to collect a great deal of metabolic information. Multiphoton microscopy (MPM) is a non-invasive, label-free optical imaging technique capable of performing fluorescence lifetime imaging (FLIM) using time correlated single photon counting (TCSPC). However, autofluorescence FLIM presents a challenge in collecting sufficient photons to provide adequate signal to noise ratios (SNR) for analysis. Additionally, the specificity of autofluorescence biomarkers of metabolism has not been well-defined. Contextualizing these autofluorescence measures using established functional biomarkers can improve interpretability of …

Effects Of Flavonoids On Reducing Colon Cancer Risk Via Macrophage Polarization, Gracien Jules

Graduate Theses and Dissertations

Colorectal cancer is one of the most fatal diseases in the United States. Chronic tissue inflammation can cause cell proliferation, which leads to tumor formation and cancer development. Macrophages are responsible for maintaining tissue homeostasis and for inflammatory responses. M1 macrophages exhibit proinflammatory responses while M2 macrophages exhibit anti-inflammatory responses. Imbalance between M1 and M2 macrophages is closely related to inflammation-associated disease development. The anti-inflammatory effects of apiaceous vegetable constituents, specifically flavonoids, have been studied for their preventative effects towards reducing disease risk. However, sufficient evidence is lacking on the mechanisms by which flavonoids impact M1/M2 macrophage polarization. RAW 264.7 …

Host-Virus Interaction Dynamics Using Sulfolobus Spindle-Shaped Virus And Host Sulfolobales System, Yeasin Ahmed

Graduate Theses and Dissertations

The Sulfolobus Spindle-shaped virus (SSV) is among the most studied archaeal viruses, particularly in extreme environments. This virus predominantly infects multiple Crenarchaea from the Sulfolobaceae family. These hosts thrive in extreme environmental conditions, such as sulfuric hot springs, with a pH of 2 to 4 and a temperature of 76-80˚C. Sulfolobales exhibit a wide geographical distribution across volcanic hot springs. The Sulfolobus Spindle-shaped Virus (SSV), encompassing strains such as SSV1 and SSV8, employs a non-lytic replication strategy in hosts belonging to the order Sulfolobales. The SSV-Sulfolobales system can be cultured in liquid and gellan gum solid media. A comprehensive study …

Examining The Use Of Two-Dimensional Video Capture And A Pressure Sensing Walkway For Collection Of Obstacle Crossing Measures, Ashlyn M. Jendro

Graduate Theses and Dissertations

Obstacle crossing research is crucial for providing insights into how and why people trip and fall. However, a growing body of literature has proposed that laboratory-based studies may not directly translate into real-world settings due to the complex nature beyond the sterile lab. Unfortunately, the absence of real-world obstacle crossing literature is likely due to a lack of available validated methods for collection of data outside the laboratory. This dissertation explored two potential methodologies (i.e., 2D motion capture and a pressure sensing walkway) that are more portable and cost-effective for collecting real-world obstacle crossing measures. It is hypothesized that 2D …

Freezing And Shipping Optimization To Increase Quality And Profitability Of Meat E-Commerce, Paul Olaoluwaniyi Dahunsi

Graduate Theses and Dissertations

Freezing remains one of the most reliable methods for preserving meat quality and extending shelf life. However, quality deterioration can still occur due to structural and biochemical changes activated during freezing, thawing, and distribution. Since the COVID-19 pandemic, consumers’ preference for bulk purchasing and online meat shopping has increased, raising questions about the best strategies to balance both quality maintenance and profitability. This thesis aimed to evaluate two key stages where frozen beef is most vulnerable to quality degradation: consumer-level freezing and post-purchase shipping. The objectives were (1) to determine the effects of product size and subsequent consumer freezing practices …

Hepatic Lipid Metabolism Of High And Low Water-Efficient Broiler Lines Under Heat Stress, Maria Fernandez Cuadrado

Graduate Theses and Dissertations

Heat stress (HS) is one of the most critical environmental challenges negatively impacting global poultry production, significantly compromising broiler performance, welfare, and economic viability. Specifically, heat stress profoundly disrupts physiological and metabolic processes, including hepatic lipid metabolism. Two broiler lines were divergently selected for high (HWE) or low (LWE) water efficiency. Heat-stressed HWE birds showed reduced fat content compared to their LWE counterparts, and HS reduced abdominal fat content in both lines. The purpose of this study was to determine the difference in underlying molecular mechanisms involved in this divergent fat content between the lines. Day-old chicks were placed in …

A Multicomponent Microneedle Patch For The Delivery Of Meloxicam For Veterinary Applications, Katherine Alejandra Miranda Munoz

Graduate Theses and Dissertations

Veterinary medicine requires innovative drug delivery strategies to enhance therapeutic efficacy while minimizing stress and handling. This dissertation explores the development and application of biodegradable microneedle patches for the transdermal delivery of meloxicam in livestock, offering a minimally invasive alternative to traditional administration methods. The research investigates the fabrication and characterization of microneedles using polyvinyl alcohol, collagen, and chitosan blends, demonstrating their mechanical strength, biocompatibility, and ability to facilitate sustained drug release. In vitro and in vivo evaluations confirm effective skin penetration, dissolution, and localized drug delivery. Pharmacokinetic studies highlight anatomical site-dependent variations in drug absorption, emphasizing the need for …

Performance And Feasibility Of Pasture Rangeland And Forage Insurance In The Delta Region, Walker Bradley Davis

Graduate Theses and Dissertations

Despite being available nationwide since 2016, enrollment in Pasture, Rangeland, and Forage (PRF) insurance remains low in many regions of the country. The program's performance also presents regional discrepancies, with loss ratios varying significantly. Studies that have simplified the complexity of interval selection for producers have been shown to positively affect PRF enrollment. Such studies remain limited in several forage-producing areas. This study aims to address the lack of information in Arkansas specifically. Arkansas has among the nation's lowest participation rates and loss ratios. Low loss ratios signal that participants pay more in premiums than received in indemnities and may …

Impact Of Lighting Wavelength On Broiler Behavior, Health, And Performance, Angela Perretti

Graduate Theses and Dissertations

Lighting influences broiler production, health, and behavior. Due to their advanced visual system, avian species perceive a wide spectrum of light. The objective of this study was to investigate the effects of white (W, 350 to 780 nm) blue (B, 450 nm), and green (G, 560 nm) light on broiler production, processing performance, activity, fear, stress, blood cell profiles, tibiotarsi (tibia) morphology, and depth perception. Day-of-hatch by-product chicks from a Cobb 500 female line (N=600) were randomly assigned to 12 pens (N=4 treatment replicates). Body weight and feed consumption were recorded on day (D) 0, 14, 28, and 41, and …

Effect Of Dietary Tryptophan Supplementation And Heat Stress On Pasture Broiler Welfare And Performance, Jaelen Matthew Cherry

Graduate Theses and Dissertations

Pasture-raised broiler chickens face temperature extremes that can threaten welfare. In the study, we evaluated whether a 0.26 % tryptophan-supplemented diet (T) improved heat stress (HS) resilience in Ross-708 broilers raised on pasture. At D14, birds began the T or remained on the control diet (C) and were moved outdoors. On D20 and 41, half of each group underwent six-hour HS; the remainder stayed under thermoneutral (TN) conditions. Weekly body weight, feed intake on D20 and D41 were recorded, and fear was measured using the Tonic Immobility (TI) test. Neither diet nor HS affected body weight. However, tryptophan supplementation resulted …

Modeling U.S. Corn Production Archetypes In The Agricultural Policy/Environmental Extender Model To Generate Life Cycle Assessment Inventory Data, Brandon Taylor

Graduate Theses and Dissertations

Corn (Zea mays) is an important crop grown across the US for many uses such as grain for animal feed, bio-ethanol production, food products, and industrial products. Corn is produced in almost every state in the US, but most corn production is concentrated in the Corn Belt Region including Iowa, Illinois, Ohio, Indiana, Minnesota, and Nebraska. Although technologies and production practices are improving corn production efficiency primarily through increased yields (improved land use), corn production at this scale greatly impacts the environment through emissions from fertilizer and pesticide runoff and leaching, soil degradation due to improper field practices, as well …

The Inside Scoop: Elucidating The Three-Way Relationship Between Schistosoma Mansoni, The Gut, And Vaccines, Mariam A. Mhanna

Biomedical Sciences Theses & Dissertations

Schistosomiasis is a neglected tropical disease that affects over 250 million people worldwide. This blood fluke infection burdens communities and areas with limited to no access to clean fresh water. When a host is exposed to cercariae, the infectious agent, in a body of water, it matures in the host’s circulation into adult female and male worms. Copulated adult worms migrate to the mesentery, in the case of Schistosoma mansoni, and produce eggs that can cross the intestinal barrier and get excreted in the feces to continue the lifecycle. The effects of S. mansoni infection on the host …

Eccentric Hamstring Strength And Acl Injury Risk In Ncaa Division I Female Field Hockey Athletes, Killian Patrick Ferrell

Exercise Science Theses & Dissertations

Anterior cruciate ligament (ACL) injuries remain a pervasive issue in female collegiate athletics, particularly in sports demanding frequent decelerations, cuts, and high-speed movements such as field hockey. Despite the high injury burden, limited research has investigated biomechanical and workload-based risk factors specific to NCAA Division I female field hockey athletes. This study aimed to evaluate the relationship between changes in eccentric hamstring strength and movement load metrics with changes in a composite ACL Risk Index. The sample included nine NCAA Division I female field hockey players who completed a 13-week offseason strength and conditioning program. Eccentric hamstring strength was measured …

Assessing Effectiveness Of Runnel Restoration In New England Salt Marsh Habitats, David M. Burdick, Grant Mckown, Gregg Moore, Jenny Gibson, Wenley Ferguson, John Herbert, Nancy Pau, Susan Adamowicz, Geoff Wilson

Faculty Publications

Rising sea levels that increase flooding in salt marshes recovering from hydrologic impairments is reducing nesting habitat for salt marsh sparrows. Abandonment of colonial farming practices (1600s through 1900s) has resulted in large, waterlogged basins characterized by shallow depressions (pannes) dominated by short-form Spartina alterniflora and unvegetated megapools that are subsiding. A relatively new technique designed to provide regular tidal flooding and drainage to the waterlogged basins that have formed on the marsh is runnelling – creation of shallow hydrologic features on the marsh surface. Will runnels result in revegetation of pannes and pools with productive perennial grasses that are …

Using Herpetofauna To Determine Wetland Health And Function In The Red River Watershed, Shelby Rodriguez-Edwards

Biology Theses

Reptiles and amphibians are commonly used indicator species in wetlands because of their increased sensitivity to environmental conditions and use of both aquatic and terrestrial habitats. Herpetofauna can reflect wetland ecological functionality through their community composition and responsiveness to environmental stressors. This study evaluated reptile and amphibian communities in natural and ACEP-WRE wetlands within the Red River Watershed of northeastern Texas and Northwestern Louisiana to assess whether restored wetlands support herpetofaunal assemblages compares to their natural counterparts. Fifteen wetlands were surveyed from February to June 2024 using visual encounter surveys, call surveys, and standardized trapping methods to document species richness …

Assessment Of Covid-19 Risks Related To Behaviour And Body Resistance In The Remote Area: Case Study In Jeneponto, Basri Basri, Andi Tilka Muftiah Ridjal, Lukman Setiawan, Renaldi M

Journal of Environmental Science and Sustainable Development

COVID-19 has posed significant global health threats, with responses varying across populations due to differences in risk perception, behaviour, and biological vulnerability. In Indonesia, most research has focused on urban settings, with limited attention paid to rural or remote communities. This study assesses COVID-19- risks related—specifically behavioural and immunity-related-factors—in the remote area of both Bontoramba Subdistrict, Jeneponto Regency. A cross-sectional study was conducted using cluster random sampling across eight villages, with 183 participants selected from a total of 12,242 households. Data were collected between November to December 2020 using a validated structured questionnaire, administered both online and face-to-face interviews. The …

Identification Of Crustose Coralline Algae Species In Florida And Their Ability To Induce Larval Settlement Of Caribbean Corals, Danielle Macias

All HCAS Student Capstones, Theses, and Dissertations

Crustose coralline algae (CCA) are a diverse, globally spread and yet poorly studied group of benthic organisms. They act as settlement cues for coral larvae, but this interaction is often species-specific, as CCA species can be either inducers or inhibitors to larval settlement and metamorphosis. Despite this importance, information on Caribbean CCA distribution, diversity, and impact on coral species is limited due to the difficulty in identifying them. In the present study, CCA samples were collected from seven different reef sites in the southeastern region of Florida’s Coral Reef and genetically identified using molecular analyses. Some of the samples collected …

Effective And Eco-Friendly Strategies To Control Birds In Industrial Estate, Jasti Rahayu, Upik K. Hadi, Susi Soviana

Journal of Environmental Science and Sustainable Development

Bird infestations in industrial areas can cause infrastructure damage, contamination, and health risks. Despite these impacts, they are rarely addressed in environmental management strategies. At the Kaltim Industrial Estate (KIE) in Bontang, East Kalimantan, synanthropic bird species that thrive in human-altered environments have become persistent nuisances, particularly because of structural opportunities for roosting and altered ecological conditions. To address this issue, this study applied Integrated Pest Bird Management (IPBM), a non-lethal and environmentally friendly approach that combines species identification, behavior analysis, and targeted deterrents. IPBM was selected for its adaptability to industrial settings and its alignment with sustainable development goals. …

Coal Mining Reclamation: Lessons Learned From Tropical And Subtropical Countries, Priyaji Agung Pambudi, Suyud Warno Utomo, Roni Setyo Handoko

Journal of Environmental Science and Sustainable Development

This study addresses the persistent environmental challenges associated with coal mining in tropical and subtropical regions, where complex microclimates and ecological variability hinder effective reclamation. Despite the increasing global coal demand, comparative cross-country insights remain limited. This research fills the gap by evaluating the best practices. This study employs a qualitative methodology with a comparative case study design, uses systematic literature review to evaluate ecology based reclamation policies and implementation practices. Data were sourced from peer-reviewed journals from Scopus and the Web of Science database and institutional reports, and analyzed using McHarg’s landscape ecology theory to evaluate reclamation policies, ecological …

Enhancing Urban Governance For Inclusive Growth And Sustainable Development, Asti Amelia Novita

Journal of Environmental Science and Sustainable Development

In light of global challenges such as climate change, inequality, and governance shortcomings, cities have a vital part to play in achieving sustainable development. Numerous local governance systems are deficient in transparency, public participation, and social fairness mechanisms essential for implementing sustainability. This study investigates how strengthening transparency, public engagement, and social fairness can enhance Malang City’s capacity to achieve the Sustainable Development Goals (SDGs). This study employed a mixed-methods approach, using the Sustainable Value Mapping and Analysis (SVMA) framework to assess insight from 250 stakeholders, including local officials, civil society groups, and community representatives. Findings reveal modest but statistically …

Stakeholder Perspectives On Extended Producer Responsibility (Epr) And E-Waste Management: A Case Study Of China, Viola Dheena Pongajow, Yufei Qin, Kaihua Xu, Siliang Liu, Zongliang Zhang, Fangyang Liu

Journal of Environmental Science and Sustainable Development

Electronic waste (e-waste) is increasing at an unprecedented rate, with China as the world’s largest contributor. Extended Producer Responsibility (EPR) has emerged as a key policy tool in China's effort to control the environmental and health impacts of e-waste. However, existing research on EPR tends to focus narrowly on government perspectives and policy design, overlooking how industries, associations, and researchers perceive and implement the system. This study addresses this gap by exploring the stakeholder dynamics within China’s formal e-waste management ecosystem. It hypothesizes that stakeholder perceptions diverge according to their roles, financial incentives, and policy understanding, influencing EPR’s effectiveness in …

Reframing Educational Cities As Waste Governance Laboratories, Suyeno Suyeno, Langgeng Rachmatullah Putra, Rispa Ngindana, Ima Kumalasari

Journal of Environmental Science and Sustainable Development

Rapid urban growth in mid-sized cities within developing countries has increased challenges in municipal solid waste management, especially in urban areas known for their concentration of educational institutions and dense populations. This study aims to evaluate the effectiveness of these policies through the framework of Good Environmental Governance, identifying critical gaps in policy implementation and proposing sustainable solutions. This study employs Soft Systems Methodology, a participatory approach for exploring complex, ill-structured problems. The key steps included rich picture creation, root definition, conceptual modeling, and comparison with real-world practices. This allowed for the integration of stakeholder perspectives and the identification of …

Prognostic Significance Of Micropapillary Pattern And Risk Factors In Patients With Resected Stage I Lung Adenocarcinoma And Possible Benefit Of Adjuvant Therapy: A Real-World Multicenter Study, Jianjie Li, Yujia Chi, Bo Jia, Qiwen Zheng, Minghan Yuan, Jianjun Zhang, Aishen Zhou, Wei Sun, Yue Yang, Jun Zhao, Tongtong An, Yuyan Wang, Minglei Zhuo, Xue Yang, Hanxiao Chen, Jingjing Wang, Xiaoyu Zhai, Yidi Tai, Yuling He, Lingdong Kong, Xumeng Ji, Yiliang Liu, Nan Wu, Ken Onodera, Paul Van Schil, Mathew Thomas, Fan Yang, Ziping Wang

Faculty, Staff and Student Publications

Background: Micropapillary (MP) pattern has been identified as a negative prognostic factor in patients with lung adenocarcinoma, but it has not been recognized as a high-risk factor for patients with stage IB lung adenocarcinoma treated with adjuvant chemotherapy. This multicenter cohort study aimed to evaluate the prognostic value of histological subtypes for stage I lung adenocarcinoma and to determine the relative survival benefit of adjuvant chemotherapy for subgroups based on MP pattern.

Methods: This retrospective study included 412 patients with stage I lung adenocarcinoma [according the eighth edition of the tumor-node-metastasis (TNM) classification] with MP pattern who underwent complete surgical …

Potential Impact Of Dotted Paropsine Beetle And Other Leaf Beetles On Eucalyptus In Utah, Marion Murray, Victoria Xiong, Megan Kast

All Current Publications

Dotted paropsine leaf beetle (DPLB) is an invasive eucalyptus pest native to Australia. Its first U.S. detection was in California in 2022. DPLB feeds on several eucalyptus species, with blue gum as its primary host. Feeding damage includes semicircular notches on leaf edges, defoliation of young leaves, and dieback of shoot tips. DPLB poses a threat to eucalyptus plantings across the western U.S. and to cut foliage producers in Utah.

Assessing The Transformation Of Livelihoods In Illegal Gold Mining Communities, Nurmansyah Ardikoesoema, Mahawan Karuniasa

Journal of Environmental Science and Sustainable Development

Illegal Artisanal Small-Scale Gold Mining (PETI) in Poboya, Palu City, exemplifies Indonesia’s nexus of socio-environmental vulnerability and institutional marginalization. Although environmental degradation, health impacts, and regulatory challenges associated with PETI have been extensively documented, limited research has systematically examined how the interplay of capital assets and internal motivation drives livelihood transformation pathways within PETI communities. To address this gap, this study uniquely integrates the Sustainable Livelihood Framework with spatial analysis to assess the combined influence of environmental, social, and economic capitals on PETI livelihood transitions. Using a mixed-methods approach, data were collected through quantitative survey and qualitative in-depth interviews with …

Environmental Impacts Of Land Use Change In Industrial Areas, Dwi Nowo Martono, Aruminingsih Aruminingsih

Journal of Environmental Science and Sustainable Development

Industrial development in Indonesia has been predominantly concentrated on Java Island, particularly in Karawang Regency, West Java Province. Covering an area of 175,327 hectares, Karawang has been identified as a strategic region for national food security. The Minister of Agrarian Affairs and Spatial Planning designated 95,667.45 hectares of rice fields as protected agricultural land. However, the expansion of industrial and residential areas within the regency poses a significant threat to its role as the national rice granary and to broader food security. As industrial land occupancy increases, the environmental capacity to support rice production and ensure national food security declines. …

Sustainable Water Management In Universities: Perceptions, Behaviours, And Challenges, Hastin Setiani, Dwita Sutjiningsih, Riri Fitri Sari

Journal of Environmental Science and Sustainable Development

Universities are increasingly adopting the “living laboratory” model to implement and evaluate sustainability innovations. These settings enable students, staff, and stakeholders to co-create and test real-world solutions, including those related to water use. Universitas Indonesia promotes sustainability through an integrated approach encompassing policy development, academics programs, and infrastructures. Prior studies using the Theory of Planned Behavior (TPB) have demonstrated that attitudes and perceived norms significantly influence sustainable behavior. However, limited research has examined how these dynamics operate within Indonesian universities or how university-based initiatives may contribute to broader urban water management. This study addresses that gap by examining perceptions, behaviors, …

Evaluation Of Sustainability Assessment Post Changes In The Management Of The Natural Reserve To The Natural Tourism Park In Kamojang Area, West Java, Indonesia, Purna Hindayani, Alnidi Safarach Bratanegara, Intan Adhi Perdana Putri, Zuzy Anna, Armandha Redo Pratama

Journal of Environmental Science and Sustainable Development

The area of Kamojang Nature Tourism Park, which was originally only 255 hectares, has expanded to 2,391 hectares following a changes in the Nature Reserve area. This change has raised concerns and objections from various parties, as it is considered to open opportunities for exploitation, threaten biodiversity, and potentially trigger tourism activities that may degrade the environmental quality of the areaThis study aims to analyze the sustainability status index of the Kamojang Natural Tourism Park following the status downgrade from a Nature Reserve to a Natural Tourism Park. A descriptive qualitative approach used, utilizing the Multi-dimensional Scaling model to determine …