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Coho Salmon (Oncorhynchus Kisutch) Response To Habitat Restoration Through Space And Time: Monitoring Growth, Survival, And Movement In A Restored Habitat Network, Carter Perez Adamson Jan 2026

Coho Salmon (Oncorhynchus Kisutch) Response To Habitat Restoration Through Space And Time: Monitoring Growth, Survival, And Movement In A Restored Habitat Network, Carter Perez Adamson

Cal Poly Humboldt theses and projects

Despite the decline of coho salmon (Oncorhynchus kisutch), Prairie Creek, a tributary of Redwood Creek in northern California, remains a coho salmon stronghold. The restoration of juvenile coho rearing habitat was identified as a recovery objective in this watershed by the National Marine Fisheries Service. Among the restoration projects addressing this objective are an ongoing project on Prairie Creek and its tributary Skunk Cabbage Creek, and a prior effort on Strawberry Creek (a tributary of Redwood Creek’s estuary). Standard monitoring methods for assessing project success have limitations and may be improved by measuring salmon use of restored habitats …


Assessing A Half-Century Of Change In Understory Plant Range And Frequency In The Klamath Mountains Of California, Emily Jean Jackson Jan 2026

Assessing A Half-Century Of Change In Understory Plant Range And Frequency In The Klamath Mountains Of California, Emily Jean Jackson

Cal Poly Humboldt theses and projects

The effects of climate change have and will continue to impact plant communities, including by potentially shifting species’ ranges towards topographically sheltered, cooler locations or higher elevations. In 2024, I resampled 140 vegetation plots established in 1969 in the Klamath Mountains of Northern California to assess range shifts of 46 understory species over a 55-year period. During this time, the elevational distribution of all species has increased significantly by an average of 26.9 m, but this increase was slower than necessary to track historic temperature niches given regional warming (215-311 m). Despite this overall increase, only four species exhibited significant …


Green Connectivity In Metropolitan Jabodetabek: Climate Change And The Challenge Of Urban Forest, Safira Maharani Putri, Hendricus Andy Simarmata Dec 2025

Green Connectivity In Metropolitan Jabodetabek: Climate Change And The Challenge Of Urban Forest, Safira Maharani Putri, Hendricus Andy Simarmata

CSID Journal of Infrastructure Development

Urban areas in Indonesia, particularly the Greater Jakarta metropolitan region (Jabodetabek), are increasingly experiencing the adverse effects of climate change, such as the Urban Heat Island (UHI) phenomenon. Rapid urbanization has contributed significantly to rising greenhouse gas emissions and deteriorating environmental quality. Urban forests are one of the key solutions to mitigate these impacts; however, their spatial distribution in Jabodetabek remains suboptimal and poorly connected. This study uses NDVI as a proxy for urban forest density, where “urban forest” refers to vegetated areas within cities as defined by Presidential Regulation No. 60/2020. The research addresses the following question: How has …


Chia Seed Gel Powder As A Clean-Label Enhancer Of Texture, Physicochemical Quality, Antioxidant Activity, And Prebiotic Function In Probiotic Low-Fat Yogurt, Mahmoud E. A. Hamouda, Ratul Kalita, Abdelfatah K. Ali, Pratibha Chaudhary, Pramith U. Don, Omar A. A. Abdelsater, Anjali Verma, Yaser Elderwy Dec 2025

Chia Seed Gel Powder As A Clean-Label Enhancer Of Texture, Physicochemical Quality, Antioxidant Activity, And Prebiotic Function In Probiotic Low-Fat Yogurt, Mahmoud E. A. Hamouda, Ratul Kalita, Abdelfatah K. Ali, Pratibha Chaudhary, Pramith U. Don, Omar A. A. Abdelsater, Anjali Verma, Yaser Elderwy

Nutrition, Dietetics, and Food Science Student Research

This study evaluated the effect of incorporating chia seed gel powder (CSGP) as a natural, clean-label stabilizer on the physicochemical, functional, microbiological, microstructural, antioxidant, and sensory properties of probiotic low-fat yogurt (PLFY) during 21 days of refrigerated storage. Six formulations were prepared using 0–2.5% CSGP, including Control (0% CSGP), YOG1 (0.5% CSGP), YOG2 (1.0% CSGP), YOG3 (1.5% CSGP), YOG4 (2.0% CSGP), and YOG5 (2.5% CSGP). Results showed that increasing CSGP levels noticeably enhanced the total solids, protein content, viscosity, hardness, and water-holding capacity of the PLFY (p < 0.05), while consistently reducing syneresis. Antioxidant activity also rose with higher CSGP concentrations, with YOG5 exhibiting the greatest DPPH scavenging activity (35.12%). Confocal laser scanning microscopy revealed a denser and more uniform protein network in PLFY fortified with CSGP, consistent with rheological measurements showing increased storage (G′) and loss (G″) moduli. Probiotic viability significantly increased (p < 0.05) in CSGP-added samples, indicating a potential prebiotic effect of CSGP. Sensory results demonstrated that although higher CSGP levels slightly darkened the yogurt color, body, texture, flavor, and total sensory scores improved markedly, with YOG5 gaining the highest total score (81.77). The results demonstrate that CSGP acts as a highly effective, multifunctional ingredient that enhances texture, stability, probiotic viability, and antioxidant capacity, making it a strong clean-label candidate for developing high-quality, functional probiotic low-fat yogurt.


Semi-Supervised Learning For Annotation And Representation Of Single-Cell Rna Sequencing And Spatial Transcriptomics Data, Haoran Liu Dec 2025

Semi-Supervised Learning For Annotation And Representation Of Single-Cell Rna Sequencing And Spatial Transcriptomics Data, Haoran Liu

Dissertations

Semi-supervised learning has emerged as a powerful paradigm for analyzing single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics (ST) data, where full annotation is often costly or impractical. scRNA-seq technologies measure the expression of thousands of genes across tens of thousands of cells, whereas ST additionally captures the spatial coordinates of gene expression within intact tissue sections. Annotation is a key step in both scRNA-seq and ST analysis pipelines, aiming to identify cell types, spatial domains, and latent biological structures. However, most existing annotation approaches rely on separate clustering methods that are typically fully unsupervised and fail to leverage side information …


Computational Methods For Single-Cell And Multi-Omic Data Integration And Regulatory Network Inference, Jianlan Ren Dec 2025

Computational Methods For Single-Cell And Multi-Omic Data Integration And Regulatory Network Inference, Jianlan Ren

Dissertations

Single-cell and multi-omic technologies have transformed the dissection of cellular heterogeneity and regulatory dynamics in health and disease. However, the high dimensionality, technical variability, and biological complexity of these datasets present significant challenges for integration, annotation, and interpretation. In this dissertation, a suite of computational approaches is introduced to address key problems in single-cell and multi-omic data analysis through model-based innovations and applied statistical frameworks.

First, a constrained deep learning framework for single-cell data integration, label transfer, and clustering is proposed. By incorporating biologically motivated constraints into the training process, robust performance is achieved across simulated and benchmark datasets spanning …


Construction And Data-Driven Analysis Of A Stochastic, Individual-Based Opioid Epidemiology Network Model, Leigh Bennett Pearcy, Owen Queen, Vincent Jodoin, Suzanne Lenhart, Christopher Strickland Dec 2025

Construction And Data-Driven Analysis Of A Stochastic, Individual-Based Opioid Epidemiology Network Model, Leigh Bennett Pearcy, Owen Queen, Vincent Jodoin, Suzanne Lenhart, Christopher Strickland

Mathematical Modelling and Numerical Simulation with Applications

While substance use epidemiology has been an active area of mathematical research in recent years, the social and mental processes that are involved in the development of substance use disorders have presented challenges to advancing the epidemiological theory and how they differ from the contraction of pathogenic disease. Such distinction is especially pertinent in the context of the current United States opioid epidemic and its intersection with the recent COVID-19 pandemic, as both prescription drugs and social influence play major roles in the development of opioid use disorder. In this paper, we construct a stochastic network model capturing how individual …


Baseline Assessment Of Insect Biodiversity And Distribution In La Salle Botanical Gardens, Pampanga, Philippines, Amir Lyndon Gavriell C. Beup, Kaleela Euan G. Jayson, Alyssa Ira Z. Tan, Ronielle Elisha S. Pascual, Alexi Gabrielle S. Henson, Esperidion Josef P. Ladao Iii, Juan Carlo T. Gumangan Dec 2025

Baseline Assessment Of Insect Biodiversity And Distribution In La Salle Botanical Gardens, Pampanga, Philippines, Amir Lyndon Gavriell C. Beup, Kaleela Euan G. Jayson, Alyssa Ira Z. Tan, Ronielle Elisha S. Pascual, Alexi Gabrielle S. Henson, Esperidion Josef P. Ladao Iii, Juan Carlo T. Gumangan

Sinaya: A Philippine Journal for Senior High School Teachers and Students

Insects are crucial for ecosystem functions, such as pollination and food web maintenance. This study aims to assess insect biodiversity in La Salle Botanical Gardens (LSBG) in Porac, Pampanga, focusing on its grassland and forestland areas. Using rapid biodiversity assessment, this study provides baseline data on insect diversity, abundance, dominance, and evenness for conservation. Sampling employed transect line intercept and quadrat methods. Specimens were collected using different collection and preservation techniques. Insects (n = 184) were collected from August to October 2024, with specimens (n = 46) belonging to seven insect orders in the grassland and specimens (n = 138) …


Comparing Individual Vs Mixed Treatments Of Chicken Bone Meal And Crab Shell Meal On The Growth Of Capsicum Annuum (Bell Pepper), Allthur Rudy R. Arroyo, John Rafael V. Capinia, Ethan Jude R. Reyes, Elnathan Jethro B. Sumalbag, Karl Benedict E. Viri, John Ray Cordova Estrellado, Kerry P. Cabral Dec 2025

Comparing Individual Vs Mixed Treatments Of Chicken Bone Meal And Crab Shell Meal On The Growth Of Capsicum Annuum (Bell Pepper), Allthur Rudy R. Arroyo, John Rafael V. Capinia, Ethan Jude R. Reyes, Elnathan Jethro B. Sumalbag, Karl Benedict E. Viri, John Ray Cordova Estrellado, Kerry P. Cabral

Sinaya: A Philippine Journal for Senior High School Teachers and Students

The recycling of nutrient-rich food waste reduces reliance on synthetic fertilizers, enhances soil quality, and improves plant growth. Existing studies have demonstrated the effectiveness of food waste, such as bone meal (B) and crab shell meal (S), as fertilizers; however, their combined use has not been investigated. This study aims to evaluate the effect of varying proportions of B and S fertilizers on the growth of Capsicum annuum (bell pepper) employing a random complete block design with 10 treatments (pure B, pure S, and a 50:50 BS mix, each at 7 g, 14 g, and 21 g) plus a control …


Cesium-137 Accumulation In Marine Fish And Associated Dose Exposure: A Global Review, N.A.A. Kamarulzaman, M.S.M. Sanusi, H.N. Idris Dec 2025

Cesium-137 Accumulation In Marine Fish And Associated Dose Exposure: A Global Review, N.A.A. Kamarulzaman, M.S.M. Sanusi, H.N. Idris

Journal of King Abdulaziz University: Marine Science

Establishing baseline data for natural radiation exposure and radioactivity levels is essential for radiological health and safety programs, particularly during the implementation and development of nuclear power initiatives. This review evaluates gamma radiation exposure and anthropogenic cesium-137 (137Cs) levels in the world’s oceans and marine fish, analyzing their radioecological impact. Data from 30 peer-reviewed publications indicate that 137Cs activity concentrations in seawater range from 0.07 Bq kg–1 to 6.4 kBq kg–1, with fish values between 0.01–3.50 kBq kg–1. Regression models developed from these studies predict the correlation between 137Cs levels in …


Lead Bioremoval By Halotolerant Bacteria Isolated From Mangrove Rhizosphere Soils Of Saudi Arabia, Reda H. Amasha, Rawan A. Alhazzani Dec 2025

Lead Bioremoval By Halotolerant Bacteria Isolated From Mangrove Rhizosphere Soils Of Saudi Arabia, Reda H. Amasha, Rawan A. Alhazzani

Journal of King Abdulaziz University: Marine Science

Bioremediation of hypersaline environments contaminated with heavy metals is challenging due to high salinity levels, particularly when using conventional microorganisms. This study aimed to isolate and identify halotolerant and halophilic bacteria from various mangrove rhizosphere soil samples in Saudi Arabia and to evaluate their ability to remove heavy metals under high-salinity conditions. Out of 27 isolated strains, LD57 and LR40 demonstrated the highest resistance to lead ions. Both isolates grew well at 37 °C in the presence of 3 M NaCl and recorded growth at varying concentrations of lead nitrate, ranging from 100 to 4500 ppm. The lead’s minimum inhibitory …


Assessment Of Microplastic Pollution In Economically Significant Fish Species From Libya’S Northeastern Mediterranean Coast, Mousa Kateesh, Tarek A. Temraz, Rafat Afifi Khattab Dec 2025

Assessment Of Microplastic Pollution In Economically Significant Fish Species From Libya’S Northeastern Mediterranean Coast, Mousa Kateesh, Tarek A. Temraz, Rafat Afifi Khattab

Journal of King Abdulaziz University: Marine Science

Microplastic pollution in marine ecosystems has become a pressing global environmental issue. However, there is limited information on the distribution of microplastics in Libyan territorial waters. This study investigates plastic waste pollution in five commercially important fish species from various marine habitats along the eastern Libyan coast (Ain El-Ghazala, Sousa, Ras Hilal, Alhaniyah, and Alhamama). A total of 75 fish specimens were collected, comprising 15 individuals from each species. The findings revealed that 38% of the sampled fish had ingested plastic debris, with microplastics being the predominant form. The Sousa region exhibited the highest contamination rate (54.46%), while Alhaniyah had …


Urbanization Impacts On Microplastic In Benthic Organisms And Sediment Of Small Islands, Andrio Wibowo, Suyud Warno Utomo Dec 2025

Urbanization Impacts On Microplastic In Benthic Organisms And Sediment Of Small Islands, Andrio Wibowo, Suyud Warno Utomo

Journal of King Abdulaziz University: Marine Science

Indonesia is an archipelago country comprising thousands of islands, including small islands. Currently, small islands have experienced urbanization in the forms of land use developments and conversions from pristine ecosystems to settlements and tourism facilities, leading to the contamination of microplastics. Despite growing numbers of research on microplastic in water, there is still limited information about microplastic in the sediment and benthic, in particular in developed small island environments. This study compared the types of land use on the island from reserved areas, tourism, and settlement. The microplastics were characterized based on the shapes. The results confirm that land use …


New Fish-Based Multimetric Index For Appraising Shatt Al-Arab Ecological Quality, Laith Faisal Lazem Dec 2025

New Fish-Based Multimetric Index For Appraising Shatt Al-Arab Ecological Quality, Laith Faisal Lazem

Journal of King Abdulaziz University: Marine Science

In recent years, there has been a growing need to develop biometric indicators that accurately reflect an area’s environmental quality and biological integrity. Various indicators have been developed and analyzed, focusing on functional, ecological, and organism-based indicators, particularly fish-related ones. The purpose of the current paper is to create the first fish-based multimetric index designed to evaluate the quality of water in the Shatt Al-Arab River (SAAR), known as Shatt Al-Arab Fish Index (SFI), which can also be applied to the Qarmat Ali River and other water bodies similar to the SAAR ecology. Data was collected from three stations along …


Preprocessing Improves The Edna Quality For 16s Rrna Metabarcoding Of Sediment Samples Of Solar Salterns, Jayanath Gopi, Bhavya Kachiprath, Solly Solomon, Sowmya P. Mohandas, Sajan C. Raju, Rosamma Philip Dec 2025

Preprocessing Improves The Edna Quality For 16s Rrna Metabarcoding Of Sediment Samples Of Solar Salterns, Jayanath Gopi, Bhavya Kachiprath, Solly Solomon, Sowmya P. Mohandas, Sajan C. Raju, Rosamma Philip

Journal of King Abdulaziz University: Marine Science

The present study examines the efficacy of pre- processing of sediment samples prior to DNA isolation to obtain high-quality eDNA for metagenomic analyses from crystallizer saltern pond in Goa during the salt harvesting phase. The quality of the extracted eDNA were confirmed through spectrophotometric analysis and PCR amplification of the 16S rRNA gene. The study showed that method 2 and 3 incorporating preprocessing of the sediment samples yielded better quality eDNA compared to the direct isolation protocol (method1). By adopting the best method i.e., preprocessing by sediment suspension- filtration, followed by DNA isolation, the eDNA was procured and subjected to …


Morphometric, Physiological, And Environmental Health Assessments Of Enhalus Acoroides From The Southeast Coast Of Bali, Indonesia, Made Pharmawati, Luh Putu Wrasiati, Ni Made Gari Dec 2025

Morphometric, Physiological, And Environmental Health Assessments Of Enhalus Acoroides From The Southeast Coast Of Bali, Indonesia, Made Pharmawati, Luh Putu Wrasiati, Ni Made Gari

Journal of King Abdulaziz University: Marine Science

Seagrasses function as primary producers and as spawning grounds and shelter for marine biota. Regardless of their relevance, seagrasses are under threat due to anthropogenic impacts and an increasing frequency of extreme climate events. Enhalus acoroides is a species of seagrass that is spread in the east and southeast waters of Bali, from Sanur Beach to Nusa Dua Beach. This study aims to analyze the differences in morphometry and the chlorophyll, proline, and malondialdehyde (MDA) content, a marker for oxidative stress in E. acoroides leaves at Pengastian Beach, Semawang Beach, and Samuh Beach, Bali. Samples were collected using line transect …


Optimizing Kappaphycus Alvarezii Seedlings: Acclimatization And Cultivation Methods For Sustainable Seaweed Seed In Lombok Kodek Bay, Dasep Hasbullah, Fahrurrozi Fahrurrozi, Gagan Garnawansah, Zaenal Arifin Siregar, Wahyu Purbiantoro, Moh. Awaludin Adam, Idham Sumarto Pratama, Nurhalis Tarmin, Balkam F. Badi, Abdul Wahab, Raismin Kotta Dec 2025

Optimizing Kappaphycus Alvarezii Seedlings: Acclimatization And Cultivation Methods For Sustainable Seaweed Seed In Lombok Kodek Bay, Dasep Hasbullah, Fahrurrozi Fahrurrozi, Gagan Garnawansah, Zaenal Arifin Siregar, Wahyu Purbiantoro, Moh. Awaludin Adam, Idham Sumarto Pratama, Nurhalis Tarmin, Balkam F. Badi, Abdul Wahab, Raismin Kotta

Journal of King Abdulaziz University: Marine Science

This study explores the combined[-10pc]AU: Please specify the corresponding author name. effects of cultivation methods and acclimatization durations on the growth performance of Kappaphycus alvarezii, a tropical seaweed widely utilized in biostimulants and bioplastics. Cultivation methods included monoculture of Spinosum (SNP), monoculture of Cottonii (DNP), and polyculture of Spinosum and Cottonii (PSP), while acclimatization treatments involved durations of 0, 2, and 4 days before planting (DBA). Results demonstrated that the SNP system achieved the highest productivity, with maximum weight (142.8 g) and relative growth rate (RGR) of 3.21% per day observed under 0 DBA. The 2 DBA treatment was …


Netrin-1 Promotes Pancreatic Tumorigenesis And Innervation Through Neo1, Hiroki Kobayashi, Yosuke Ochiai, Junya Arai, Masahiro Hata, Feijing Wu, Masaki Sunagawa, Tadashi Iida, Taisuke Baba, Ermanno Malagola, Takayuki Tanaka, Zhengyu Jiang, Ruth A White, Xiaofei Zhi, Jin Qian, Quin T Waterbury, Ruhong Tu, Biyun Zheng, Yi Zeng, Hualong Zheng, Puran Zhang, Shuang Li, Leah B Zamechek, Jonathan S Labella, Takahiro Sugie, Atsushi Enomoto, Holger K Eltzschig, Carmine F Palermo, Iok In Christine Chio, Kenneth P Olive, Timothy C Wang Dec 2025

Netrin-1 Promotes Pancreatic Tumorigenesis And Innervation Through Neo1, Hiroki Kobayashi, Yosuke Ochiai, Junya Arai, Masahiro Hata, Feijing Wu, Masaki Sunagawa, Tadashi Iida, Taisuke Baba, Ermanno Malagola, Takayuki Tanaka, Zhengyu Jiang, Ruth A White, Xiaofei Zhi, Jin Qian, Quin T Waterbury, Ruhong Tu, Biyun Zheng, Yi Zeng, Hualong Zheng, Puran Zhang, Shuang Li, Leah B Zamechek, Jonathan S Labella, Takahiro Sugie, Atsushi Enomoto, Holger K Eltzschig, Carmine F Palermo, Iok In Christine Chio, Kenneth P Olive, Timothy C Wang

Faculty, Staff and Student Publications

Nerves can regulate tumorigenesis and cancer progression. However, clarification of the role of axon guidance molecules in tumorigenesis, innervation, and metastasis is required to better understand the tumor-promoting functions of nerves. Using murine KrasG12D-mutant pancreatic organoids, we screened axon guidance molecules and identified netrin-1 upregulation. Netrin-1 was also upregulated in vivo during pancreatic tumorigenesis in humans and mice. Mutant KRAS and β-adrenergic signaling upregulated netrin-1 and its receptor NEO1 in epithelial cells in part through the MAPK pathway. Ex vivo culture of celiac ganglia showed that netrin-1 promoted the axonogenesis of sympathetic neurons through nerve NEO1. In the Pdx1-Cre;LSL-KrasG12D/+ model, …


Speeding Up Interval Estimation For R2-Based Mediation Effect Of High-Dimensional Mediators Via Cross-Fitting, Zhichao Xu, Chunlin Li, Sunyi Chi, Tianzhong Yang, Peng Wei Dec 2025

Speeding Up Interval Estimation For R2-Based Mediation Effect Of High-Dimensional Mediators Via Cross-Fitting, Zhichao Xu, Chunlin Li, Sunyi Chi, Tianzhong Yang, Peng Wei

Faculty, Staff and Student Publications

Mediation analysis is a useful tool in investigating how molecular phenotypes such as gene expression mediate the effect of exposure on health outcomes. However, commonly used mean-based total mediation effect measures may suffer from cancellation of component-wise mediation effects in opposite directions in the presence of high-dimensional omics mediators. To overcome this limitation, we recently proposed a variance-based R-squared total mediation effect measure that relies on the computationally intensive nonparametric bootstrap for confidence interval estimation. In the work described herein, we formulated a more efficient two-stage, cross-fitted estimation procedure for the R2 measure. To avoid potential bias, we performed …


Biomarker And Age At Onset Endophenotypes Offer New Insights Into The Genetic Etiology Of Alzheimer’S Disease, Joseph Bradley Dec 2025

Biomarker And Age At Onset Endophenotypes Offer New Insights Into The Genetic Etiology Of Alzheimer’S Disease, Joseph Bradley

Arts & Sciences Graduate Student Theses and Dissertations

Introduction: Alzheimer’s Disease (AD) remains among the top 10 causes of death in the United States and is projected to affect nearly 14 million people by 2050. To this point, studies of Alzheimer’s genetics and endophenotypes have yielded a bounty of results that culminated in the first disease-modifying drugs, lecanemab and donanemab, in 2022. Most of the genetic studies for Alzheimer’s disease to date have been focused on late-onset AD or Autosomal dominant AD, leaving a critical need for studying sporadic early-onset AD (EOAD; ~10% of cases). Furthermore, the demand for clinical portability has created a need for high-sensitivity proteomic …


Investigating The Incorporation Of Milled Rice In Brewing Non-Alcoholic Beer To Enhance Sensory Quality, Christian Schubert, Rahul Sen, Nils Rettberg, Scott Lafontaine Dec 2025

Investigating The Incorporation Of Milled Rice In Brewing Non-Alcoholic Beer To Enhance Sensory Quality, Christian Schubert, Rahul Sen, Nils Rettberg, Scott Lafontaine

Food Science Faculty Publications and Presentations

The influence of substituting barley malt with milled rice on the sensory and chemical characteristics of nonalcoholic beers (NAB) was investigated. Physicochemical and volatile analyses were conducted on the NABs. Original gravities ranged from 6.71% w/w (100% barley malt) to 7.15% w/w (100% rice), with alcohol contents between 0.33% v/v (70% barley/30 %rice) and 0.45 % v/v (100% rice). Color decreased from 10.8 EBC (100% barley malt) to 3.3 EBC (100% rice). Descriptive analysis sensory evaluations by trained panelists in the United States and European Union were used to characterize the sensory profiles of the NABs. Principal component analysis showed …


Intercontinental Variation In Population Genetics And Life-History Traits In Native And Invasive Populations Of The Aquatic Plants Myriophyllum Spicatum And Myriophyllum Sibiricum, Anastasia V. Mozharova Dec 2025

Intercontinental Variation In Population Genetics And Life-History Traits In Native And Invasive Populations Of The Aquatic Plants Myriophyllum Spicatum And Myriophyllum Sibiricum, Anastasia V. Mozharova

Graduate Doctoral Dissertations

Biological invasions pose significant threats to freshwater ecosystems worldwide, and understanding their evolutionary, genetic, and biogeographic drivers is essential for effective management. My dissertation integrates microsatellite and ITS rDNA data to examine the dynamics of both invasive and native populations of two closely related aquatic plant species, Myriophyllum spicatum (Eurasian watermilfoil) and M. sibiricum (Northern watermilfoil).

Myriophyllum spicatum is native to Eurasia, where it inhabits a variety of freshwater aquatic habitats. Since its introduction to North America in the mid-20th century, it has become highly invasive, forming dense underwater mats that outcompete native vegetation, reduce biodiversity, and degrade water quality. …


The Effect Of Withering Methods On Physicochemical And Sensory Properties Of Liberica Coffee Leaf Tea (Coffea Liberica), Surhaini Surhaini, Indriyani Indriyani, Rahayu Suseno, Rinaldi Rinaldi, Ferry Jie, Huda Wazzan Dec 2025

The Effect Of Withering Methods On Physicochemical And Sensory Properties Of Liberica Coffee Leaf Tea (Coffea Liberica), Surhaini Surhaini, Indriyani Indriyani, Rahayu Suseno, Rinaldi Rinaldi, Ferry Jie, Huda Wazzan

Research outputs 2022 to 2026

This study aims to evaluate the effect of different withering methods on physicochemical and organoleptic properties of Liberica coffee leaf tea (Coffea liberica) and to identify the optimal treatment. The experiment was conducted using a Completely Randomized Design (CRD) with five withering treatments, including no withering, room temperature withering for 10 h, air withering for 10 h, oven withering at 60°C for 30 min, and steaming for 2 min, each with four replications. The observed parameters included powder moisture content, pH, color (L*, a*, b*), antioxidant activity, total phenols, total tannins, flavonoids, and sensory attributes, namely color, aroma, acidity, taste, …


Gas-Flux-Determination-Method Effects On Greenhouse Gas Emissions Andglobal Warming Potential From Soybean In Southeast Arkans, Jonathan B. Brye, Diego Della Lunga, Kristofor R. Brye Dec 2025

Gas-Flux-Determination-Method Effects On Greenhouse Gas Emissions Andglobal Warming Potential From Soybean In Southeast Arkans, Jonathan B. Brye, Diego Della Lunga, Kristofor R. Brye

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Greenhouse gas (GHG) research and quantification have increased in importance recently due to climate change. Non-flow-through chamber systems collect large quantities of gas concentration data to determine the gas flux, but gas-flux-determination (GFD) methods can vary between regression models, how negative fluxes are considered, and what agroecosystem is evaluated, which makes selecting an analysis method complicated. The objective of this study was to evaluate the effects of GFD method [i.e. linear (L) and exponential (E) regression models, with negative fluxes (WNF) and with reassigned negative fluxes (RNF)] on GHG fluxes, emissions, and global warming potential (GWP) from soybean (Glycine max) …


Artificial Intelligence As A Catalyst For Systemic Sport Ecology, Ugo Arbieu, Laís Carneiro, Sonia Tieo, Franck Courchamp Dec 2025

Artificial Intelligence As A Catalyst For Systemic Sport Ecology, Ugo Arbieu, Laís Carneiro, Sonia Tieo, Franck Courchamp

Journal of Applied Sport Management

Artificial intelligence (AI) is reshaping both sport management and environmental science, yet these developments have largely evolved in parallel. AI can serve not merely as a technical tool but also as a catalyst for systemic sport ecology, a field that integrates sport, digital innovation and environmental sustainability. Advances in discriminative, generative and agentic AI enable the synthesis of complex ecological and sport-related data, improving monitoring, forecasting, resource efficiency, policy design, and decision-making across scales. In doing so, AI offers a pathway beyond fragmented sustainability interventions and can support holistic approaches to the interconnected crises of climate change, pollution, and biodiversity …


Kejadian Luar Biasa Gondongan Di Sd Islam X Samarinda, 2024, Rudy Agus Riyanto, Irfansyah Baharuddin Pakki, Mela Sabena, Meli Pasiakan, Erlina Erlina, Rima Andriani Dec 2025

Kejadian Luar Biasa Gondongan Di Sd Islam X Samarinda, 2024, Rudy Agus Riyanto, Irfansyah Baharuddin Pakki, Mela Sabena, Meli Pasiakan, Erlina Erlina, Rima Andriani

Jurnal Epidemiologi Kesehatan Indonesia

Mumps outbreaks are a public health issue that still frequently occur in elementary school settings, particularly among children with low immunization coverage. Therefore, a comprehensive epidemiological understanding is needed as a basis for control. This research aims to describe the epidemiological picture and causative factors of the mumps outbreak that occurred at Islamic Elementary School X in Samarinda City in 2024, using a case series design. The outbreak occurred from April to October 2024, while epidemiological data collection and case verification were conducted from December 2nd to 8th, 2024. The analysis uses surveillance data, field observations, and questionnaires administered to …


Hubungan Kehamilan Usia Remaja Dengan Kelahiran Prematur Di Rsud Cengkareng Jakarta Barat Tahun 2022: Sebuah Studi Kohort Retrospektif, Anna Triana, Sudarto Ronoatmodjo Dec 2025

Hubungan Kehamilan Usia Remaja Dengan Kelahiran Prematur Di Rsud Cengkareng Jakarta Barat Tahun 2022: Sebuah Studi Kohort Retrospektif, Anna Triana, Sudarto Ronoatmodjo

Jurnal Epidemiologi Kesehatan Indonesia

Premature birth is leading causes of neonatal mortality. According to the World Health Organization (WHO), global premature birth rates reached 9.9% in 2020, it’s rising compared to preterm birth rates in 2010. One of the risk factors for preterm birth is the mother's age, which pregnant adolescents are more at risk of giving birth to preterm babies due to physiological, psychological, and socioeconomic immaturity. This study is an analytical study with a retrospective cohort design to determine the relationship between adolescents pregnancy and preterm birth. This study was conducted in Cengkareng General Hospital West Jakarta using patient’s medical record data. …


Systematic Literatur Review: Development Effectiveness E-Module Pbl-Based Learning To Improve Problem-Solving Skills In Ecosystem Material, Liziaruti Aurani Chong, Diana Vivanti Sigit, Ratna Komala, Rusdi Rusdi, Tri Handayani Dec 2025

Systematic Literatur Review: Development Effectiveness E-Module Pbl-Based Learning To Improve Problem-Solving Skills In Ecosystem Material, Liziaruti Aurani Chong, Diana Vivanti Sigit, Ratna Komala, Rusdi Rusdi, Tri Handayani

Jurnal Pendidikan Sains

This study aims to analyze the effectiveness of developing e-modules based on Problem Based Learning (PBL) in improving students' problem-solving abilities in ecosystem material. The method used is Systematic Literature Review (SLR) by reviewing articles published in the period 2018–2025. The results of the analysis show that most of the research uses the descriptive method. Research and Development (RnD) with junior high and senior high school subjects, and produced N-Gain values ranging from 0.50 to 0.83, categorized as moderate to high. These findings demonstrate that PBL-based e-modules are capable of supporting the improvement of problem-solving skills through interactive, contextual, and …


A Proposed Urban Branding Strategy As Sustainable Urban Regeneration Policy, A Case Study Of Burj-Al Burullus City, Dalia S. Shebl, Kariman A. Shawky Dec 2025

A Proposed Urban Branding Strategy As Sustainable Urban Regeneration Policy, A Case Study Of Burj-Al Burullus City, Dalia S. Shebl, Kariman A. Shawky

Mansoura Engineering Journal

This study examines the importance of a branding strategy that can be applied in Burj Al-Burullus city to promote and catalyze cultural heritage branding and invest in these facilities for economic and tourism purposes. By measuring the indicators of how urban branding may be achieved. Burj Al-Burullus city is empirically examined using Identity-Based Approach. Based on profound theoretical and analytical studies, the branding concept was studied and analyzed composing a list of indicators for tangible and intangible elements that illustrate the urban branding value of cities. Followed by an analysis of Burj Al-Burullus city using GIS and city data base …


Comparisons Of Zooplankton Communities Before And After Chemical Renovation In Lake Ogallala, Nebraska, Theo Huber, Melissa Wuellner, Alexandria Keiler-Klein, Alexander D. Engel, Keith D. Koupal Dec 2025

Comparisons Of Zooplankton Communities Before And After Chemical Renovation In Lake Ogallala, Nebraska, Theo Huber, Melissa Wuellner, Alexandria Keiler-Klein, Alexander D. Engel, Keith D. Koupal

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Rotenone is commonly used to remove undesirable fish species and support recreational fisheries. Lake Ogallala, a 263-ha tailwater reservoir located in western Nebraska, has had a history with rotenone use dating back to 1969. While past renovations of the reservoir have documented impacts on water quality, aquatic vegetation establishment, and benthic invertebrate and fish communities, zooplankton responses had not been studied. To evaluate potential effects, we compared zooplankton densities and community composition before and after the most recent renovation. Monthly samples were collected from April – September in 2023 (pre-renovation) and 2024 (post-renovation) using an 80-μm circular plankton net at …