Digital Commons Network^™

Spatial Predictors Of Human–Black Bear Interactions In Nova Scotia, Canada, Jason I. Airst, Tricia B. Fleming

Human–Wildlife Interactions

The increased global frequency of human–wildlife conflict with large, wild carnivores and omnivores negatively impacts human, wildlife, and ecosystem health. The goal of this study was to determine what landscape characteristics best predicted where human–black bear (Ursus americanus) interactions occurred in Nova Scotia, Canada, to support management efforts. We compared the location of 3,278 human–bear conflict reports and 867 non-conflict reports collected between 2017 and 2021 to 12,000 randomly generated locations. Data were analyzed using logistic additive mixed models. We found that interactions (conflict and non-conflict reports) occurred near roads and farther from forests and surface water features. …

Aboveground Biomass Density Estimation Using Deep Learning: Insight From Neon Ground-Truth Data And Simulated Gedi Waveform, Ashish Mahaur

Dissertations, Master's Theses and Master's Reports

Accurately estimating Aboveground Biomass Density (AGBD) is crucial for managing Earth's carbon cycle and informing climate strategies. NASA's GEDI mission advances global forest mapping, but traditional linear models often yield less reliable AGBD estimates. This study enhances AGBD estimation using deep learning models with NEON ground-truth data and simulated GEDI waveforms. We compared 1D CNNs, LSTMs, and pre-trained CNNs to traditional models. The ResNet152 model outperformed linear regression, achieving an R² of 0.68, demonstrating a 17% improvement. Our experiments also demonstrate the importance of large, diverse datasets, particularly for training deep learning models.

Maximum Entropy Species Distribution Modeling For The Spring Ephemeral Herb Bloodroot (Sanguinaria Canadensis) In Eastern North America, Velan Manivannan

Williams Honors College, Honors Research Projects

The spring ephemeral plant Bloodroot (Sanguinaria canadensis) has a widespread native range in North America, spanning much of the eastern United States and Canada. While its current NatureServe conservation status is designated as ‘secure’ (NatureServe, 2023), its status as a spring ephemeral places it at a heightened risk for climate change-induced phenological mismatch with advancing forest canopy closure. Additionally, under continued anthropogenic climate change, Bloodroot may also experience range shifts or contractions as the edges of its present range warm past physiological thresholds. To determine the potential for range shifts and contractions under future warming, I generated a …

Sweetening The Deal: Enhancing Flower Production And Quality For Native Pollinators In Urban Landscapes, Yaelle Esther Reeve

Honors Undergraduate Theses

Urban landscapes can support pollinator conservation, but traditional landscape designs lack the diverse mixtures of native plants needed to support native pollinators. Although native plants support pollinators and can survive with less water and fertilizer than non-native landscape plants, they do not always grow well under modified urban soil conditions and irrigation regimes. A better understanding of the factors influencing flower production and the quality of native plants is needed if we are to design landscapes that support pollinator conservation. This study focused on how flower production and quality in different native plants responded to compost and irrigation treatments. The …

Nutritional Quality Of Cultured Giant Freshwater Prawns (Macrobrachium Rosenbergii), Nurul F.M.S. Rizal, Najeebah A. Tashim, Zuhairi Azahari, Aida M. Basri, Tiong H. Lim, Aqilah Junaidi, Suriayati Chuprat, Seno A. Putra, Hanif Fakhrurroja

ASEAN Journal on Science and Technology for Development

Macrobrachium rosenbergii, or the giant freshwater prawn has high market demand due to its exceptional nutritional value for the human diet. Often, most nutritional studies focus on the edible prawn parts, rather than the prawn discarded components. The nutritional evaluation of different prawn parts can provide insights into the nutrient composition and guiding for the development of value-added products. Three groups of prawn samples were collected from 3 different ponds, representing different prawn sizes. The water quality analysis of each pond was also conducted to determine the extent to which it can affect the nutritional composition. The conventional and biochemical …

Innovative Approaches And Challenges In Brunei's Agricultural Management, Nuramalina Manshor, Ulaganathan Subramanian

ASEAN Journal on Science and Technology for Development

The management and development in agriculture attract agricultural economic science for the pricing, business, farm policy, and financial knowledge. It conjointly draws on plant and animal sciences for soil, seed and fertilizer information, weed control, insect management, and rationing and breeding; agricultural engineering knowledge for farmhouses, vehicles, irrigation, field drying, drainage, and management of erosions; and data on human behavior in Science and Social Science.

A Gis Tool For Optimal Forage Species Selection, David B. Hannaway, Christopher Daly, Michael D. Halbleib, Linda Brewer, Sophie Baur, Chelsea Clark, Emilie Krecklow, Scott Bassett

IGC Proceedings (1977-2023)

To determine appropriate forage species for US ecoregions, geographic information technologies (GIS) are being used to create climatic and soil factor maps. Excel spreadsheets and RStudio are used to create response functions of forage species to minimum and maximum temperature, annual precipitation, soil pH, soil salinity, and salinity. National forage data and expert opinion will evaluate quantitative tolerances, seasonal yield profiles, and pollinator suitability. These maps and agronomic and livestock use information will be shared with forage specialists and farmers to provide alternatives for improved perenniality, increased diversity, and system circularity. Future work will include development and evaluation of climate …

Co-Divergence Of Lemur Hosts And Gut Microbiomes Across Multiple Evolutionary Scales, Mariah E. Donohue

Theses and Dissertations--Biology

This dissertation bridges micro- and macroevolutionary approaches to understand the co-diversification of animal hosts and their gut microbiomes at different evolutionary timescales. I examined these dynamics using wild lemurs, a diverse Primate clade endemic to the island of Madagascar.

First, I tested the relative effects of host phylogenetic relationships, diet, and habitat in shaping the gut microbiome through deep evolutionary time and across distinct microbial kingdoms. I designed a natural experiment sampling feces from rainforest and dry forest lemur communities with similar phylogenetic assemblages and considerable variation in dietary strategy. Then, I amplified and sequenced two metabarcoding genes, the V4 …

Reproductive Isolation And Gene Flow Across Space, Time And Genomes In Neodiprion Lecontei And N. Pinetum, Ashleigh Nicole Glover

Theses and Dissertations--Biology

To explain biodiversity, evolutionary biologists must understand how independent lineages arise via the evolution of reproductive isolation during the speciation process. Hybridizing taxa provide an excellent opportunity to investigate the evolution of reproductive isolating barriers and genomic divergence, thereby enhancing our understanding of speciation. However, hybridization between diverging taxa can vary across geographic space, the genome, and time. Thus, understanding the factors that promote or inhibit hybridization can provide insight into the biotic, environmental, and genetic causes of divergence and gene flow. Importantly, the mechanisms responsible for generating variation in hybridization dynamics and the consequences of such hybridization remains unknown …

Biogeographic Affiliation And Centers Of Richness As Predictors Of Elevational Range-Size Patterns For Malesian Flora, Melissa Whitman, Sabrina E. Russo

School of Biological Sciences: Faculty Publications

Our goal was to interrogate the idea that “mountain passes are higher in the tropics” by investigating ecological and biogeographic drivers of elevational range-sizes patterns among equatorial flora. We used herbarium records for 60 species-rich plant families, representing 18 535 species total, to estimate distributions over a 4500 m elevational gradient. For each family, we estimated the change in average range-sizes with increasing elevation (i.e. Rapoport's rule, abbreviated as ERR) and quantified 15 metrics of familial richness distribution, evolutionary age, and biogeographic affiliation. We visualized covariation across families using phylogenetic principal components analysis (pPCA). We then evaluated how family-level ERR …

Conceptualizing Sustainability And Resilience In Value Chains In Times Of Multiple Crises—Notes On Agri-Food Chains, Alexander Follmann, Peter Dannenberg, Nina Baur, Boris Braun, Grit Walther, Amelie Bernzen, Jan Börner, Michael Brüntrup, Martin Franz, Emmanuel Sulle

Arusha Climate and Environmental Research Centre

Global and regional agri-food value chains feed societies and are an income source for hundreds of millions of farmers around the world. They are also target areas for action to achieve a global sustainability transformation. Agri-food chains are highly vulnerable in the context of multiple crises, including the global environmental crisis, geopolitical fragmentation, armed conflicts and wars, and the aftermath of the COVID-19 pandemic. Measures to increase chain resilience are widely discussed; however, some such measures contradict sustainability measures. While there has been considerable research on the sustainability and resilience of agri-food chains, few studies have integrated both perspectives or …

Molecular Characterization Of Non-H5 And Non-H7 Avian Influenza Viruses From Non-Mallard Migratory Waterbirds Of The North American Flyways, 2006–2011, Shahan Azeem, John A. Baroch, Deepanker Tewari, Kristy L. Pabilonia, Mary L. Killian, Birgit Bradel-Tretheway, Dong Sun, Sara Ghorbani-Nezami, Kyoung-Jin Yoon

United States Department of Agriculture Wildlife Services: Staff Publications

The surveillance of migratory waterbirds (MWs) for avian influenza virus (AIV) is indispensable for the early detection of a potential AIV incursion into poultry. Surveying AIV infections and virus subtypes in understudied MW species could elucidate their role in AIV ecology. Oropharyngeal–cloacal (OPC) swabs were collected from non-mallard MWs between 2006 and 2011. OPC swabs (n = 1,158) that molecularly tested positive for AIV (Cts ≤ 32) but tested negative for H5 and H7 subtypes were selected for virus isolation (VI). The selected samples evenly represented birds from all four North American flyways (Pacific, Central, Mississippi, and Atlantic). Eighty-seven …

Wildlife Monitoring With Drones: A Survey Of End Users, Raymond B. Iglay, Landon R. Jones, Jared E. Elmore, Kristine O. Evans, Sathish Samiappan, Morgan B. Pfeiffer, Brad F. Blackwell

United States Department of Agriculture Wildlife Services: Staff Publications

Rapid advancements in technology often yield research inquiry into novel applications and drone (i.e., unoccupied aircraft systems or UAS) applications in wildlife management are no exception. We questioned the time lag between drone‐related research and end‐user assessments. We implemented an online, cross‐sectional survey of wildlife professionals to better understand current drone use and benefits or concerns, complemented by a review of contemporary peer‐reviewed and gray literature. We found little disparity between scientific inquiry and end‐user experiences (i.e., similar trends among concerns in published literature and survey results). Exploring new (i.e., advancements in computer vision) and refining original drone applications (i.e., …

A Genus In The Bacterial Phylum Aquificota Appears To Be Endemic To Aotearoa-New Zealand, Jean F. Power, Carlo R. Carere, Holly E. Welford, Daniel T. Hudson, Kevin C. Lee, John W. Moreau, Anna-Louise Reysenbach, Thijs J.G. Ettema, Multiple Additional Authors

Biology Faculty Publications and Presentations

Allopatric speciation has been difficult to examine among microorganisms, with prior reports of endemism restricted to sub-genus level taxa. Previous microbial community analysis via 16S rRNA gene sequencing of 925 geothermal springs from the Taupō Volcanic Zone (TVZ), Aotearoa-New Zealand, revealed widespread distribution and abundance of a single bacterial genus across 686 of these ecosystems (pH 1.2-9.6 and 17.4-99.8 °C). Here, we present evidence to suggest that this genus, Venenivibrio (phylum Aquificota), is endemic to Aotearoa-New Zealand. A specific environmental niche that increases habitat isolation was identified, with maximal read abundance of Venenivibrio occurring at pH 4-6, 50-70 °C, and …

Abalones At Risk: A Global Red List Assessment Of Haliotis In A Changing Climate, Howard Peters, Gina M. Ralph, Laura Rogers-Bennett

Biological Sciences Faculty Publications

There is increasing awareness that marine invertebrates such as abalones are at risk from the combined stressors of fishing and climate change. Abalones are an important marine fishery resource and of cultural importance to Indigenous and non-Indigenous people. A highly priced marine delicacy, they are inherently vulnerable: individuals are slow-growing and long-lived and successful reproduction requires dense assemblages. However, their global conservation status is poorly understood. Using IUCN Red List methodology, we assessed the extinction risk to all 54 species of abalone (genus Haliotis). Of the 21 fished commercially for human consumption either now and/or in the past, 15 …

Concepts In Animal Parasitology, Chapter 08: Distributional Ecology Of Parasites [Parascript Approaches], A. Townsend Peterson

Concepts in Animal Parasitology

Discusses the distributional ecology of parasites, exploring the factors influencing their geographic distributions and the complexities involved compared to free-living organisms.

Chapter 8 in Concepts in Animal Parasitology on distributional ecology of parasites by A. Townsend Peterson. 2024. S. L. Gardner and S. A. Gardner, editors. Zea Books, Lincoln, Nebraska, United States. doi: 10.32873/unl.dc.ciap008

Concepts In Animal Parasitology, Chapter 29: Rhinebothriidea Healy Et Al., 2009 (Order) [Platyhelminthes, Cestoda, Eucestoda], Omar Lagunas-Calvo, Brenda Atziri García-García, Berenice Adán-Torres, Luis García-Prieto

Concepts in Animal Parasitology

An overview of the cestode (tapeworm) order Rhinebothriidea Healy et al., 2009, small worms that occur in the spiral intestine (valve) of rays (Batoidea) from marine and freshwater habitats worldwide. Includes discussion of their main morphological characteristics, a description and summary of a epresentative species, Anthocephalum currani Ruhnke and Seaman 2009, taxonomy, life cycle, and zoogeography.

Chapter 29 in Concepts in Animal Parasitology by Omar Lagunas-Calvo, Brenda Atziri García-García, Berenice Adán-Torres, and Luis García-Prieto. 2024. S. L. Gardner and S. A. Gardner, editors. Zea Books, Lincoln, Nebraska, United States. doi: 10.32873/unl.dc.ciap029

Concepts In Animal Parasitology, Chapter 22: Diphyllobothriidea Kuchta Et Al., 2008 (Order): The Broad Tapeworms [Platyhelminthes, Cestoda, Eucestoda], Tomáš Scholz, Roman L. Kuchta

Concepts in Animal Parasitology

Broad tapeworms are among the largest tapeworms on Earth and some species have been known as human parasites for a long time. However, species diversity of these usually large-sized tapeworms is still poorly known, partly because of the existence of numerous unresolved taxonomic problems. They currently get some attention due to several cases of human infection in non-endemic areas due to importation of unfrozen fish.

Includes an overview of the cestode order Diphyllobothriidea Kuchta et al., 2008, the group's taxonomic history, current classification, general morphology, species diversity, life cycles, host associations, geographic distribution, phylogenetic relationships, and selected taxa from the …

Concepts In Animal Parasitology, Chapter 44: Haematoloechidae Odening, 1964 (Family) [Platyhelminthes, Trematoda, Digenea, Plagiorchiida, Xiphidiata], Virginia León-Règagnon

Concepts in Animal Parasitology

An overview of the trematode (fluke) family Haematoloechidae Odening, 1964, parasites of the lungs of amphibians that are found on every continent except Antarctica. Their life cycle includes a snail and an aquatic arthropod as first and second intermediate hosts, respectively, and a frog or salamander as the definitive host. Includes a discussion of the main characters, taxonomy, phylogenetics, life cycles, host range, and biogeography.

Chapter 44 in Concepts in Animal Parasitology, by Virginia León-Règagnon. 2024. S. L. Gardner and S. A. Gardner, editors. Zea Books, Lincoln, Nebraska, United States. doi: 10.32873/unl.dc.ciap044

Concepts In Animal Parasitology, Chapter 59: Pentastomida: Endoparasitic Arthopods, Chris T. Mcallister

Concepts in Animal Parasitology

An overview of the Pentastomida, a homogeneous and distinctive systematic assemblage of over 130 taxa of worm-like dioecious obligate endoparasitic arthropods that, as adults, inhabit the respiratory tract (bronchi, lungs, and nasal passages) and coelomic cavity of various freshwater and terrestrial vertebrates, with approximately 90% maturing in reptiles. Includes discussion of their fossil record, evolution, geographic range, history of pentastomid research, general morphology, host relationships, larval development, life cycles, ecology, and taxonomy.

Chapter 59 in Concepts in Animal Parasitology, by Chris T. McAllister. 2024. S. L. Gardner and S. A. Gardner, editors. Zea Books, Lincoln, Nebraska, United States. doi: 10.32873/unl.dc.ciap059

Concepts In Animal Parasitology, Chapter 43: Allocreadiidae Looss, 1902 (Family) [Platyhelminthes, Trematoda, Digenea, Plagiorchiida, Xiphidiata], Gerardo Pérez-Ponce De León, David Iván Hernández-Mena, Brenda Solórzano-García

Concepts in Animal Parasitology

An overview of the trematode (fluke) family Allocreadiidae Looss, 1902, mainly found as parasites of the digestive tracts of freshwater fishes. Includes a discussion of the taxonomy and classification, main morphological characteristics, morphological variability, life cycle, population biology, phylogenetic relationships, species diversity, and descriptions of representative species.

Chapter 43 in Concepts in Animal Parasitology, by Gerardo Pérez-Ponce de León, David Iván Hernández-Mena, and Brenda Solórzano-García. 2024. S. L. Gardner and S. A. Gardner, editors. Zea Books, Lincoln, Nebraska, United States. doi: 10.32873/unl.dc.ciap043

Concepts In Animal Parasitology, Chapter 51: Heterakoidea (Superfamily): Cosmopolitan Gut-Dwelling Parasites Of Tetrapods [Nemata, Secernentea], F. Agustín Jiménez-Ruiz

Concepts in Animal Parasitology

An overview of the cosmopolitan gut-dwelling nematodes (roundworms) in the superfamily Heterakoidea, which occur most often in the cecum and large intestine of amphibians, reptiles, birds, and mammals. Discusses the general morphological characteristics, diagnosis, distribution and host associations, general biology, evolution, systematics, phylogeny, ecology, and conservation, including coverage of species of veterinary importance, Heterakis gallinarum and Histomonas meleagridis.

Chapter 51 in Concepts in Animal Parasitology, by F. Agustín Jiménez-Ruiz. 2024. S. L. Gardner and S. A. Gardner, editors. Zea Books, Lincoln, Nebraska, United States. doi: 10.32873/unl.dc.ciap051

Quantifying Resource Nexus: Virtual Water Flows, Water Stress Indices, And Unsustainable Import Fraction In South Korea's Grain Trade Landscape, Golden Odey, Bashir Adelodun, Qudus Adeyi, Akinsoji Adisa Hammed, Salau Rahmon Abiodun, Kyung Sook Choi

Arusha Climate and Environmental Research Centre

This study delves into the intricate dynamics of South Korea’s grain production and trade, specifically scrutinizing water resource management and sustainability trends from 1991 to 2022. The primary objective was to assess the temporal evolution of South Korea’s agricultural virtual water trade in maize, soybeans and wheat. Employing the virtual water flows assessment method, water stress index, and an unsustainable import fraction (UIF) analysis, this research aimed to uncover key patterns and dynamics within the agricultural grain trade landscape. Utilizing comprehensive datasets encompassing grain trade, as well as water and land footprint data, this study assessed the intricate interplay between …

Keynote Address And Meeting Program, Academy Editors

Journal of the Arkansas Academy of Science

No abstract provided.

Population Viability Of Egyptian Tortoises: Analyzing Demographics Sensitivities And Extinction Risk In North Sinai, Basem Ahmed Rabia Motwaly

Graduate Theses/Dissertations

This study investigated the population viability of the critically endangered Egyptian Tortoise (Testudo kleinmanni) across five populations in North Sinai, Egypt. The research aimed to assess demographic sensitivities, extinction risks, and the influence of environmental variables to guide conservation strategies. Using multistate mark-recapture models within a Bayesian framework, survival, transition, and recapture probabilities were estimated across life stages, integrating site-specific environmental data such as the Normalized Difference Vegetation Index (NDVI). The analysis revealed stark contrasts between populations, with three sites demonstrating high extinction risk due to lower juvenile survival and limited recruitment. In contrast, two populations exhibited demographic …

Molecular Understanding And Design Of Deep Eutectic Solvents And Proteins Using Computer Simulations And Machine Learning, Usman Lame Abbas

Theses and Dissertations--Chemical and Materials Engineering

Hydrophobic deep eutectic solvents (DESs) have emerged as excellent extractants. A major challenge is the lack of an efficient tool to discover DES candidates. Currently, the search relies heavily on the researchers’ intuition or a trial-and-error process, which leads to a low success rate or bypassing of promising candidates. DES performance depends on the heterogeneous hydrogen bond environment formed by multiple hydrogen bond donors and acceptors. Understanding this heterogeneous hydrogen bond environment can help develop principles for designing high performance DESs for extraction and other separation applications. This work investigates the structure and dynamics of hydrogen bonds in hydrophobic DESs …

On The Ground And From Above: A Multi-Factor Analysis Of The Direct And Indirect Drivers Of Tallgrass Prairie Small Mammal Communities, Erin Rowland-Schaefer

Graduate Research Theses & Dissertations

Tallgrass prairies are among the most globally threatened ecosystems, with only one percent of the historical extent remaining in Illinois. Prairie restoration is an essential strategy to preserve biodiversity and reestablish threatened species. Practitioners use management tools to shift the landscape context of prairie restoration sites, such as prescribed fire and land cover change. Managers can also impact the landscape connectivity and edge proximity of certain areas through the use of mowed driving lanes. The effects of these factors on small mammals, which are central in tallgrass prairie food webs and relevant to human health and restoration success, are not …

Alfred Russel Wallace Notes 29. Extraterrestrial Entertainment: Are We Being Monitored By Alien Beings?, Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace (1823−1913) was an early advocate for the rational assessment of likelihood of extraterrestrial life. Current efforts to evaluate the situation have ranged from the heavily self-indulgent to the more objective, and it is still often difficult to decide just how much of the information we are receiving on the subject is dependable. An attempt is made here to cut through the haze and reduce the matter to elementals.

Translocations Of North American Bison Across Large Climatic Gradients: Impacts On Thermoregulation, Body Size, And Helmintic Infection, Hayden Wolfe

Electronic Theses and Dissertations

Every year, one-eighth of all North American bison (Bison bison) are translocated, often across large climatic gradients. Over the last 16 years bison have been translocated from Wind Cave National Park in South Dakota to establish six herds across the United States central grasslands in Iowa, Missouri, Illinois, Indiana, and Kansas. Influence of climatic gradients on herd-level thermoregulation, body size, and helmintic infection were evaluated. Overall, 1174 thermal images and 1050 fecal samples were collected between 2021 and 2023. Physiological heat flux was used to measure thermoregulation, asymptotic body mass (ABM) was used for body size, and helminth genera abundance …

A Tale Of Two Working Landscapes, Sage C. Sutcliffe

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.