Digital Commons Network^™

Exploring The Relative Contribution Of Humans On Genetic Differentiation Among Speyeria Callippe Populations In The California Coast Ranges, Laura K. Heller

University of the Pacific Theses and Dissertations

The distinction between populations due to environmental factors like climate and geography are well-known and expected, therefore it is not illogical to believe more disjunct habitats would also impact genetic structure. Through Restriction Site Associated DNA Sequencing (RADseq) and Mitochondrial DNA (mtDNA) analysis the genetic structure and differentiation (fixation index, Fst) of Speyeria callippe across four regions in California: the North Coast Ranges, Bay Area, Diablo Range, and South Coast Ranges were analyzed. The influence of geographic distance, human population density, and forest cover were explored as factors influencing the genetics of these populations. The combination of mtDNA and RADseq …

Spatial Analysis Of Socioeconomic Factors At Found Locations Of Orphaned Mammals In Champaign County, Illinois, Usa, Colleen Elzinga, Stephanie Heniff, William Sander, William Marshall Brown, Csaba Varga, Samantha Sander

Human–Wildlife Interactions

Young mammals make up a significant portion of animals brought into wildlife rehabilitation centers. Unfortunately, some of these presumed orphaned individuals are inappropriately removed from their native habitat. As such, there is a need for educational community outreach centered on the proper identification of orphaned wildlife that benefit from human intervention, while maximizing limited resources of rehabilitation facilities. This study evaluated found locations of common mammalian orphans presenting from Champaign County to the University of Illinois Wildlife Medical Clinic, Illinois, USA, between 2015 and 2020. The found locations of the orphans (99 Virginia opossums [Didelphis virginiana], 80 common …

Spatial Multiplexing And Omics, Julienne L Carstens, Santhoshi N Krishnan, Arvind Rao, Anna G Sorace, Erin H Seeley, Sammy Ferri-Borgogno, Jared K Burks

Faculty, Staff and Student Publications

Much like solving a game of Clue, understanding physiological mysteries involves answering who, what, when, and where. Multi-omics approaches delve into cellular and molecular identities (the who and what), while longitudinal data collection addresses the when. Spatial dimensions address the where. This Primer discusses current technologies enabling quantification across biological scales, emphasizing the importance of retaining the spatial dimension of that data. We outline experimental design considerations, including targeted versus untargeted approaches, sample types, biological scale, and four main classes of molecule detection. Spatial analytics are explored, covering questioning approaches, analytical platforms, image segmentation and sampling. Example applications, reproducibility considerations, …

Restricted Dispersal And Phenotypic Response To Water Depth In A Foundation Seagrass, Erik E. Sotka, Randall Hughes, Torrie Hanley, Cynthia G. Hays

Biology Faculty Publications

Species conservation and management benefit from precise understanding of natural patterns of dispersal and genetic variation. Using recent advances in indirect genetic methods applied to both adult plants and dispersed seeds, we find that the mean seed dispersal in a threatened marine foundation plant (the eelgrass Zostera marina) is approximately 100-200 m. This distance is surprisingly more similar to that of wind-dispersed terrestrial seeds (~10s to 100s of meters) than the passive dispersal of marine propagules via currents (~10s to 100s of kilometres). Because nearshore marine plants like Zostera are commonly distributed across strong selective gradients driven by bathymetry (depth) …

A Worldwide Overview Of The Status And Prospects Of Edible Insect Production, R. Caparros Megido, F. Francis, E. Haubruge, P. Le Gall, J. K. Tomberlin, C. D. Miranda, H. R. Jordan, C. J. Picard, M. J.M. Pino, J. Ramos-Elordy, E. Katz, K. B. Barragán-Fonseca, E. M. Costa-Neto, R. Ponce-Reyes, G. Wijffels, S. Ghosh, C. Jung, Y. S. Han, B. Conti, A. Vilcinskas, C. M. Tanga, M. O. Kababu, D. Beesigamukama, J. A. Morales Ramos, A. Van Huis

All Peer-Reviewed Publications

There has been continuous and growing interest in edible insects. Worldwide, various levels of insect farming are emerging, ranging from small domestic farms to vertical farms reaching heights of 36 meters, accommodating several million growing insects. The appeal of insects lies in their ecological benefits, as they contribute to the valorization of unde-rutilized organic residues while requiring minimal space and water. The selection of insect species is influenced not only by their biology and behavior but also by local preferences and customs, varying with the scale of production and geographi-cal location. This review article aims to provide an updated overview …

Expanded Range Of Nasutitermes Callimorphus Mathews, 1977 (Isoptera: Termitidae: Nasutitermitinae), Comparison With N. Corniger (Motschulsky, 1855) And N. Ephratae (Holmgren, 1910), And Synonymy Of N. Dasyopsis Thorne, 1989 Into N. Nigriceps (Haldeman, 1854), Allen Szalanski

Entomology and Plant Pathology Faculty Publications and Presentations

The imago of N. callimorphus is described for the first time. Nasutitermes callimorphus occurs from Mexico to Paraguay. Nasutitermes callimorphus is smaller in all measurements but generally resembles its widely distributed sympatric congeners, N. corniger (Motschulsky, 1855) and N. ephratae (Holmgren, 1910). Molecular phylogenetic analysis of a portion of the mitochondrial 16S rRNA gene and the COII mtDNA marker revealed that N. callimorphus forms a distinct clade using both maximum parsimony and maximum likelihood analysis. Unlike N. corniger and N. ephratae, N. callimorphus does not build epigeal or arboreal carton nests. We further regard N. dasyopsis Thorne, 1989 as a …

Portable X-Ray Fluorescence Spectrometry For Sensing Salinity And Sodicity In Glacial Northern Great Plains Soils With Machine Learning Models, Adam Devlin

Electronic Theses and Dissertations

Saline and sodic soils are an increasing concern across the Northern Great Plains (NGP) due to factors of climate change and land management that are drawing geologically derived salts to the land surface. Traditional laboratory assessments, such as electrical conductivity (EC) and sodium adsorption ratio (SAR), are time and resource consumptive. Portable X-ray fluorescence (PXRF) may be a viable proximal sensing alternative, as it is able to provide elemental data in minutes, in situ or ex situ, and can directly quantify salinity-associated elements like Ca, Mg, and S. PXRF paired with predictive models has proven useful for a range of …

Navigating The Noise: Implications Of Increasing Ship Noise For An Arctic Ocean Soundscape, Andrea Lynn

Antioch University Dissertations & Theses

There is no quiet way to churn water. Noise pollution caused by ships is increasing in the Arctic Ocean as sea ice melts, creating more open channels for vessels. This study provides a glimpse into the sources and balance of sounds in a portion of the Arctic Ocean soundscape surrounding the Norwegian archipelago of Svalbard. Characterization of the soundscape provides essential data as the region quickly transforms. This study also considers human perceptions of underwater ocean noise and its impacts in the region, and it reviews current ocean policy, suggesting mitigation strategies and ways forward. Before the rapid development of …

Assessing Road Dust Impacts On Macroinvertebrates Community Structure In Canadian Arctic Lakes, Hong Yi Gao

Theses and Dissertations (Comprehensive)

In the Canadian Arctic, unpaved gravel roads are essential for regional accessibility but are also potential sources of road dust runoff. My study investigated the impacts of road dust from the Dempster and Inuvik-Tuktoyaktuk Highways on adjacent freshwater ecosystems, focusing on water quality parameters and macroinvertebrate communities. Using a stratified random sampling design, 18 lakes were studied across two regions (boreal forest and tundra) and three distance categories from the road (0-300 m, 300-600 m, and > 600 m). Contrary to my initial hypotheses, findings revealed no significant differences in water quality or invertebrate communities relative to distance from the road. …

A Scoping Review Of Population Diversity In The Common Genomic Aberrations Of Clear Cell Renal Cell Carcinoma, Sean S. Kumar, Ninad Khandekar, Komal Dani, Saina R. Bhatt, Vinay Duddalwar, Anishka D'Souza

Department of Medicine Faculty Publications

Introduction: Previous literature has shown that clear cell renal cell carcinoma (ccRCC) is becoming a more prevalent diagnosis and that the incidence and mortality differ both regionally and racially. While the molecular profiles for ccRCC are studied regionally through biopsy and sequencing techniques, the genomic landscape and ccRCC diversity data are not well-studied. We conducted a review of the known genomic data on 6 of the most clinically relevant DNA biomarkers in ccRCC: Von Hippel-Landau (vHL), Polybromo-1 (PBRM1), Breast Cancer Gene 1-Associated Protein 1 (BAP1), Histone-Lysine N-Methyltransferase Domain-Containing 2 (SETD2), Mammalian Target of Rapamycin (mTOR), and Lysine-Specific Demethylase 5C (KDM5C). …

Exploring The Consistency Of Flow Regimes Within And Among Ecoregions Of The Southeastern United States, Frank Paul Braun Iv

College of Graduate Studies: Theses & Dissertations

Human manipulation of river systems has long been a known contributor to the loss of freshwater biodiversity. By accounting for environmental causes of hydrologic variation among rivers, we can better understand how ecoregion mediates flow regimes and forecast species that may be at risk. Presumably, natural variation associated with ecoregion boundaries exerts strong influence on flow regimes, and may mediate relationships between other features (e.g., land use, dam operations) and hydrology. However, such between-ecoregion variation is poorly investigated, particularly at fine spatial and temporal scales. I characterized 10 hydrologic metrics, representing the five key dimensions of the flow regime (magnitude, …

A Comprehensive Analysis Of Neuroblastoma Incidence, Survival, And Racial And Ethnic Disparities From 2001 To 2019, Kevin Campbell, David A Siegel, Puja J Umaretiya, Shifan Dai, Andras Heczey, Philip J Lupo, Jeremy M Schraw, Trevor D Thompson, Michael E Scheurer, Jennifer H Foster

Faculty, Staff and Students Publications

BACKGROUND: We characterize the incidence and 5-year survival of children and adolescents with neuroblastoma stratified by demographic and clinical factors based on the comprehensive data from United States Cancer Statistics (USCS) and the National Program of Cancer Registries (NPCR).

METHODS: We analyzed the incidence of neuroblastoma from USCS (2003-2019) and survival data from NPCR (2001-2018) for patients less than 20 years old. Incidence trends were calculated by average annual percent change (AAPC) using joinpoint regression. Differences in relative survival were estimated comparing non-overlapping confidence intervals (CI).

RESULTS: We identified 11,543 primary neuroblastoma cases in USCS. Age-adjusted incidence was 8.3 per …

What's In A Name? Standardization Of Vernacular Names For Trichechus Manatus, A. A. Mignucci-Giannoni, Daniel Gonzalez-Socoloske, Anmari Alvarez-Alemán, Jamie Aquino, D. Caicedo-Herrera, Delma Nataly Castelblanco-Martínez, Diane Claridge, M. Fabiola Corona-Figueroa, Adolphe O. Debrot, Benoit De Thoisy, Carlos Espinoza-Marin, J. Galves, Eddy Garcia-Alfonso, Hector M. Guzman, Jalaludin Ahmad Khan, Jeremy J. Kiszka, Fabia De Oliveira Luna, Miriam Marmontel, Leon David Olivera-Gomez, Christine O'Sullivan, James A. Powell, Enrique Pugibet-Bobea, Indranee Roopsind, Carlos J. Silva

Faculty Publications

Trichechus manatus is one of 3 recognized extant species of manatees of the mammalian Order Sirenia. Currently, it is known by various vernacular names, none of which are descriptive of its biology and known distribution. This lack of standardization has led to confusion and miscommunication, hindering conservation efforts for this species. We propose standardizing the vernacular names used to refer to the species and its 2 subspecies based on appropriate geographical characterization in English, Spanish, French, Dutch, and Portuguese, respectively: “American Manatee”, “Manatí de las Américas”, “Lamantin d’Amérique”, “Amerikaanse Lamantijn”, and “Peixe-boi das Américas” for T. manatus; “Florida Manatee”, “Manatí …

What Is Aphthous Stomatitis? What Are The Possible Causes And Treatments?, Shirah Balakhane

The Science Journal of the Lander College of Arts and Sciences

The historical understanding of Recurrent Aphthous Stomatitis (RAS), also known as canker sores, has evolved. This paper aims to collect data that determines the underlying factors that can cause RAS and highlights treatments or preventive measures one should take. RAS is a common mucosal disease of the mouth that affects healthy people and presents atypically in immunocompromised people. Geographical, age, and gender-related factors can all affect the prevalence. RAS still has no known cause; however, several systemic, local, immunologic, genetic, dietary, allergy, and microbiological factors—including immunosuppressive medications and stress—have been suggested as potential culprits. Using topical and systemic medicines, the …

South America Holds The Greatest Diversity Of Native Daisies (Asteraceae) In The World: An Updated Catalogue Supporting Continental-Scale Conservation, Andrés Moreira-Muñoz, Marcelo Monge, Mariana A. Grossi, Fabio Andrés Ávila, Vanezza Morales-Fierro, Gustavo Heiden, Berni Britto, Stephan Beck, Jimi N. Nakajima, Vanina G. Salgado, Juan Facundo Rodríguez-Cravero, Diego G. Gutiérrez

Publications and Research

Asteraceae is the world’s richest plant family and is found on all continents, in environments ranging from the coast to the highest mountains. The family shows all growth forms and, as in other angiosperm families, species richness is concentrated in tropical regions. South America has the highest diversity of Asteraceae in the world, yet taxonomic and distributional knowledge gaps remain. This study compiles an updated catalog of Asteraceae native to South America, based on national and regional checklists and ongoing large-scale flora projects. The resulting checklist includes a total of 6,940 species and 564 genera native to South America to …

Scale And Habitat Effects On Measurement Of Streptomyces Biogeography And Biodiversity, Terilyn A. Stoflet

Cal Poly Humboldt theses and projects

Bacteria in the genus Streptomyces are detected in most soils around the world, as well as on and in seeds, plants, animals, insects and the wind. Currently, more than 700 valid species of Streptomyces have been identified worldwide. Streptomyces produce the majority of antibiotics, antivirals and antifungals, as well as important agricultural bioactive molecules due to their unique genetic capabilities. Their distinct genetic abilities allow them to produce an unlimited amount of biosynthetic gene clusters, or BGC’s. Although many compounds come from Streptomyces, scientists have not discovered the biogeographic patterns of this genus. The biogeography of Streptomyces is a …

A Case Of Incipient Budding Speciation In The California Floristic Province, Infraspecific Divergence In Abronia Villosa, Eli J. Allen

Cal Poly Humboldt theses and projects

Physical barriers to gene flow are the traditional evidence for species divergence. Conversely, there has been increasing acknowledgment of speciation in the face of gene flow as an evolutionary process. Budding speciation involves peripheral populations adapting to local ecological conditions, thereby budding off from a widespread progenitor species. Budding speciation is distinguished by ecological divergence and is generally evidenced by asymmetrical range size and nested phylogenetic relationships of sister species. The narrow endemic Abronia villosa var. aurita is adapted to montane sandy washes adjacent to its widespread sister variety, the desert dwelling var. villosa. Here, I tested the hypothesis …

Skipresnet: Crop And Weed Recognition Based On The Improved Resnet, Wenyi Hu, Tian Chen, Chunjie Lan, Shan Liu, Lirong Yin

Electrical & Computer Engineering Faculty Publications

Weeds have a detrimental effect on crop yield. However, the prevailing chemical weed control methods cause pollution of the ecosystem and land. Therefore, it has become a trend to reduce dependence on herbicides; realize a sustainable, intelligent weed control method; and protect the land. In order to realize intelligent weeding, efficient and accurate crop and weed recognition is necessary. Convolutional neural networks (CNNs) are widely applied for weed and crop recognition due to their high speed and efficiency. In this paper, a multi-path input skip-residual network (SkipResNet) was put forward to upgrade the classification function of weeds and crops. It …

Environmental Health And Impact Of Workload On Errors For Wildland Fire Personnel, Michael Bryan Held

Masters Theses

"This thesis offers an analysis of how environmental health and workload affect wildland fire dispatchers and firefighters, combining results from two studies. The first study, "Environmental Health of Wildland Firefighters: A Scoping Review," performs a scoping review of scientific literature that examines the unique environmental health challenges wildland firefighters face. The review points out the increased risks to safety, health, and well-being from more exposure to natural hazards, identifying key research gaps and priorities. It stresses the need to broaden the geographic and demographic scope of studies, improve analytical methods, and increase research funding and focus for wildland firefighters.

The …

Consequences Of Spatial Structure In Soil–Geomorphic Data On The Results Of Machine Learning Models, Daehyun Kim, Insang Song, Lorrayne Miralha, Daniel R. Hirmas, Ryan W. Mcewan, Tom G. Mueller, Pavel Samonil

Biology Faculty Publications

In this paper, we examined the degree to which inherent spatial structure in soil properties influences the outcomes of machine learning (ML) approaches to predicting soil spatial variability. We compared the performances of four ML algorithms (support vector machine, artificial neural network, random forest, and random forest for spatial data) against two non-ML algorithms (ordinary least squares regression and spatial filtering regression). None of the ML algorithms produced residuals that had lower mean values or were less autocorrelated over space compared with the non-ML approaches. We recommend the use of random forest when a soil variable of interest is weakly …

Sustainable Food House Area (Sfha): Analysis Of Community Knowledge And Behavior, Delvi Adri, Mimien Henie Irawati, Sueb Sueb

Jurnal Pendidikan Sains

This research aimed to assess the knowledge and behavior of the community regarding the Sustainable Reserve Food Garden (SRFG) program. The study was conducted in July 2016 in Jorong Lubuk Agam, Kenagarian Ampang Kuranji Koto Baru, Dharmasraya, West Sumatra. Utilizing a descriptive quantitative approach, data were collected using Accidental Random Sampling, involving 33 heads of families as respondents. The findings revealed that community knowledge and behavior related to the SRFG program were generally insufficient, with 44.1% and 47.27% of respondents, respectively, demonstrating a lack of understanding and practice. The study concludes that approximately one-third of the population has limited knowledge …

Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia

Journal of Nonprofit Innovation

Urban farming can enhance the lives of communities and help reduce food scarcity. This paper presents a conceptual prototype of an efficient urban farming community that can be scaled for a single apartment building or an entire community across all global geoeconomics regions, including densely populated cities and rural, developing towns and communities. When deployed in coordination with smart crop choices, local farm support, and efficient transportation then the result isn’t just sustainability, but also increasing fresh produce accessibility, optimizing nutritional value, eliminating the use of ‘forever chemicals’, reducing transportation costs, and fostering global environmental benefits.

Imagine Doris, who is …

Suledo Community-Based Forest Reserve: A Contested Terrain Between Peasants And Pastoralists In Kiteto District, 1990–2016, Juma Marmo

Journal of Humanities and Social Sciences

This paper examines how the establishment of the SULEDO community forest reserve caused land use conflicts between peasants and pastoralists in Kiteto District from 1990 to 2016. The peasants complained that the government had deliberately made it possible for pastoralists to get more benefits from the reserve since they were allowed to graze their livestock in the reserve, which took large parts of their former agricultural land. Conversely, the grabbing of land by peasants in the forest reserve caused complaints from the pastoralists who claimed that the peasants were grabbing their grazing land in the reserve. Using archival sources, fieldwork …

Anti-Apostatic Feeding Behavior In Two Species Of Assassin Bug, The White-Spotted Assassin Bug Platymeris Biguttatus And Red-Spotted Assassin Bug Platymeris Rhadamanthus (Hemiptera: Reduviidae), Julia H. Potocnjak, Christopher Vitek

School of Integrative Biological & Chemical Sciences Faculty Publications

Predator-prey relationships are a driving force when examining community ecology. One question in predator-prey interactions is how a predator may respond to novel prey phenotypes, a form of frequency dependent prey selection. A predator may selectively target or avoid the novel prey, a behavior referred to as anti-apostatic or apostatic selection respectively. We examined apostatic prey selection by observing feeding behavior in two species of assassin bugs (Hemiptera: Reduviidae), the white-spotted assassin bug (Platymeris biguttatus) and the red-spotted assassin bug (Platymeris rhadamanthus) which were fed unmodified and modified (novel) phenotypes of Turkistan cockroaches, Blatta lateralis (Blattodea: …

Evolution Of Primate Vocal Repertoires: Vocal Systems As Embodied Capital For Mediating Within-Group Conflict, Eric Schniter, Mateo Peñaherrera-Aguirre

ESI Working Papers

Life history traits constrain investments in costly neural and somatic embodied capital, potentially shaping the evolution of primate vocal communication systems. This study integrates life history theory with the social complexity hypothesis to test a sequential pathway from longevity to social dynamics to vocal repertoire size, using updated vocal repertoire data for McComb & Semple’s (2005) set of 42 non-human primate species, alongside measures of group size and within-group conflict. We compiled data on vocal repertoire size, within-group conflict, group size, endocranial volume, and maximum longevity, analysing these via Phylogenetic Sequential Canonical Cascade Model and ancestral character reconstructions. …

Biology, Ecology, Infestation, And Management Of Warble Flies (Diptera: Oestridae), Muhammad Jamil, Abdul Razzaq, Noman Latif, Mariam Fatima, Muhammad Saqib, Matiullah Jaffar, Hafiz Zille Rehman, Faiqah Ramzan

Journal of Bioresource Management

The range grazing livestock (cattles and goats) are afflicted by a significant skin/hide issue known as warble fly larval infestation, which is caused by the larvae of Hypoderma lineatum and Hypoderma bovis species which resulted in substantial economic losses to the leather industries. The life cycle of hypodermosis is complex, involving both ecto- and endoparasitic stages. Female warble flies deposit their eggs in rows of 5-8 on individual hairs of the host, often targeting the legs but also other areas. These eggs are securely attached to the hairs and a single female fly may lay as many as 800 eggs …

Perceptions Regarding Drinking Water Quality And Its Effects On Human And Animal Health Among Plain-Sect Community Members, Anil Kumar Chaudhary, Parmveer Singh, Sharmistha Basak

Journal of Amish and Plain Anabaptist Studies

The quality of drinking water can affect human and animal health, and plain-sect populations may be more susceptible than other rural populations due to their use of traditional farm management practices and their reliance on well water. Therefore, an interdisciplinary team conducted a pilot study to understand the status of existing drinking water quality, community perceptions regarding causes of water deterioration, its associated effect on human and animal health, and solutions to address such challenges. The study included water testing and a focus group discussion with plain-sect community members. The findings revealed that participants perceived the drinking water quality as …

Living Among Wildlife: Elevating Human-Wildlife Interactions And Coexistence, Bridget Rebecca Murphy

Graduate Student Portfolios, Professional Papers, and Capstone Projects

After a semester of learning, both in class and in nature, my writing honed in further on this human-nature divide. To me, I see humans as part of nature – as we are mammals, animals, part of the food chain, biological beings no higher than others on our planet. We have simply constructed this false narrative around us within our societies, minds and media that embeds this division between us and nature, between us and wildlife. Humans have been managing, stewarding, living off and within landscapes for thousands of years. As time and technology evolved, a lot of people began …

Isolation And Characterization Of Nut Shell Proteins From Arachis Hypogea Linn. And Cocos Nucifera Linn. And Its Effect On Macrophage Activation To Treat Visceral Leishmaniasis, Suhatha S

Theses and Dissertations

Glycoproteins are among several immunomodulatory agents known to activate the innate immune system. Plant derived glycoproteins are a generous source of glycoproteins that could be utilized as cost effective preparations for therapeutics. Isolating glycoproteins from agricultural by- products with the intention to use them against Visceral Leishmaniasis (VL) was the focus in this doctoral study. The two nut shells, Arachis hypogea L. (Groundnut) and Cocos nucifera L. (Coconut), were used for the isolation of glycoprotein used in the study. Crude glycoproteins from the A. hypogea L. (AHP-C) were isolated and fractioned. AHP-F2 was identified as 28.37 kDa Mannose/Glucose binding lectin …

Hazards And Perceptions Of Cigarette And E-Cigarette Waste, Jossalyn Rogalski

Honors Theses

No abstract provided.