Digital Commons Network^™

Estimating Historical Forest Density From Land‐Survey Data: A Response To Baker And Williams (2018), Carrie R. Levine, Charles V. Cogbill, Brandon M. Collins, Andrew J. Larson, James A. Lutz, Malcolm P. North, Christina M. Restaino, Hugh D. Safford, Scott L. Stephens, John J. Battles

Wildland Resources Faculty Publications

In the Western United States, historical forest conditions are used to inform land management and ecosystem restoration goals (North et al. 2009, Stephens et al. 2016). This interest is based on the premise that historical forests were resilient to ecological disturbances (Keane et al. 2018). Researchers throughout the United States have used the General Land Office (GLO) surveys of the late 19th and early 20th centuries to estimate historical forest conditions (Bourdo 1956, Schulte and Mladenoff 2001, Cogbill et al. 2002, Paciorek et al. 2016). These surveys were conducted throughout the United States …

Geographic And Climatic Attributions Of Autumn Land Surface Phenology Spatial Patterns In The Temperate Deciduous Broadleaf Forest Of China, Weiguang Lang, Xiaoqiu Chen, Liang Liang, Shilong Ren, Siwei Qian

Geography Faculty Publications

Autumn vegetation phenology plays a critical role in identifying the end of the growing season and its response to climate change. Using the six vegetation indices retrieved from moderate resolution imaging spectroradiometer data, we extracted an end date of the growing season (EOS) in the temperate deciduous broadleaf forest (TDBF) area of China. Then, we validated EOS with the ground-observed leaf fall date (LF) of dominant tree species at 27 sites and selected the best vegetation index. Moreover, we analyzed the spatial pattern of EOS based on the best vegetation index and its dependency on geo-location indicators and seasonal temperature/precipitation. …

Habitat Suitability Index Model Of The Florida Sandhill Crane (Grus Canadensis Pratensis) In West-Central Florida, Courtney E. Buck

USF Tampa Graduate Theses and Dissertations

The Florida Sandhill Crane (Grus canadensis pratensis) is a state threatened endemic subspecies of the Sandhill Crane (Nesbitt & Tacha, 1997). With a population that was estimated at a maximum of 5,000 individuals in 2003 (Nesbitt & Hatchitt, 2008), it is imperative to identify potentially viable habitats, as Florida is rapidly developing. This research develops a Habitat Suitability Index model to determine unsuitable to optimally suitable habitat locations throughout west-central Florida. To do so, six suitability variables based on the crane’s life history were evaluated: Potential nesting area, immediate nesting area, wetland coverage, foraging area, brooding area, and road proximity. …

Coral Reef Change Detection In Remote Pacific Islands Using Support Vector Machine Classifiers, Justin J. Gapper, Hesham El-Askary, Erik Linstead, Thomas Piechota

Mathematics, Physics, and Computer Science Faculty Articles and Research

Despite the abundance of research on coral reef change detection, few studies have been conducted to assess the spatial generalization principles of a live coral cover classifier trained using remote sensing data from multiple locations. The aim of this study is to develop a machine learning classifier for coral dominated benthic cover-type class (CDBCTC) based on ground truth observations and Landsat images, evaluate the performance of this classifier when tested against new data, then deploy the classifier to perform CDBCTC change analysis of multiple locations. The proposed framework includes image calibration, support vector machine (SVM) training and tuning, statistical assessment …

On The Composistion Of Cymodocea Nodosa Root Exudate Under Artificial Blue, Green And Natural Light Conditions, Armand Martin, Ben Manriquez, Christian Pompa, Aaron Saper, Kyle A. Grice, Jason Bystriansky

DePaul Discoveries

Seagrasses are identified as a sentinel species: a good indicator of overall marine ecosystem health and function. At the rhizome, they are known to interact with marine bacteria by exchanging energy in the form of glucose and free amino acids secreted through root exudate in exchange for microbe-fixated nitrogen that can be utilized for plant growth. To analyze potential outcomes of possible future changes in light availability, an experiment was designed to collect and analyze the root exudate of Cymodocea nodosa under three light conditions (standard fluorescent light, blue LED, and green LED light). After 72 hours of treatment, the …

A Playful Life Cycle Assessment Of The Environmental Impact Of Children's Toys, Madeline R. Robertson, Christie Klimas

DePaul Discoveries

Toys aid in children’s progression through developmental stages, yet toy production has an environmental impact. This study is the first comparative life cycle assessment of three children’s toys. A life cycle assessment quantifies the impact of an item in comparable impact categories (i.e. global warming potential in kg CO2 equivalents). In this study, we use open LCA to compare toy impact from production to use. The results indicate that the plastic polybutylene carried the highest impact in terms of global warming potential for our predominantly plastic toy. The addition of a battery to the plush dog increased the toy’s eutrophication …

Evolutionary Dynamics Of Influenza Type B In The Presence Of Vaccination: An Ecological Study, Lindsey J. Fiedler

USF Tampa Graduate Theses and Dissertations

Understanding the evolutionary dynamics of influenza type B in human hosts is a public health concern as we strive to minimize the disease burden in seasonal epidemics. Vaccination is considered the best defense against contracting influenza, and everyone over the age of 6 months is advised to get vaccinated before each season. The effect that vaccine-acquired immunity has on the evolution of influenza B remains unclear. In the U.S., vaccine-uptake is irregular across the states, and the differing coverages present an opportunity to study how vaccination influences viral evolution. This thesis analyzes the evolutionary patterns of influenza B in the …

Changes In The Spatial Distribution And Anatomy Of A Range Shift For The Atlantic Surfclam Spisula Solidissima In The Mid-Atlantic Bight And On Georges Bank, Jeremy R. Timbs, Eric N. Powell, Roger Mann

Faculty Publications

The Atlantic surfclam Spisula solidissima supports one of the largest fisheries on the US northeast coast. Using ~30 yr of data from surfclam stock surveys, variance-to-mean ratios (VtMRs) were calculated both temporally and spatially for a range of surfclam size classes to determine the degree of patchiness. The VtMR declined from the 1980s to present in all regions (offshore Delmarva, New Jersey, Long Island, Southern New England, Georges Bank); however, VtMR rose with increasing clam size. Taylor’s power law (TPL) analysis corroborated the VtMR; the surfclam is highly patchy across its range. The surfclam’s proclivity for a patchy distribution varied …

Solanum Plastisexum, An Enigmatic New Bush Tomato From The Australian Monsoon Tropics Exhibiting Breeding System Fluidity., Angela J. Mcdonnell, Heather B. Wetreich, Jason T. Cantley, Peter Jobson, Christopher T. Martine

Faculty Journal Articles

A bush tomato that has evaded classification by solanologists for decades has been identified and is described as a new species belonging to the Australian “Solanum dioicum group” of the Ord Victoria Plain biogeographic region in the monsoon tropics of the Northern Territory. Although now recognised to be andromonoecious, S. plastisexum Martine & McDonnell, sp. nov. exhibits multiple reproductive phenotypes, with solitary perfect flowers, a few staminate flowers or with cymes composed of a basal hermaphrodite and an extended rachis of several to many staminate flowers. When in fruit, the distal rachis may abcise and drop. A member of …

The Effects Of Edaphic And Climatic Factors On Secondary Lichen Chemistry: A Case Study Using Saxicolous Lichens, Alexander Paukov, Anzhelika Teptina, Maria Morozova, Ekaterina Kruglova, Sergio E. Favero-Longo, Cora Bishop, Nishanti Rajakaruna

Biological Sciences

Diversity of secondary lichen metabolites and their relationship to substrate and environmental parameters were studied in saxicolous lichens in the Middle and South Urals of Russia. Atranorin, usnic acid, gyrophoric acid, zeorin, norstictic acid, antraquinones and stictic acid were found in 73, 42, 41, 37, 36, 35 and 32 species, respectively, of 543 taxa collected. One hundred and ninety six species (i.e., 36% of total species documented) contained no secondary metabolites. Spectra of secondary metabolites of crustose lichens varied on different rock types, while in fruticose and foliose groups only those species without lichen acids were dependent on the substrate …

Population Structure Of Avian Malaria Parasites, Robert Ricklefs, Meghann Humphries, Matthew Stacy

Biology Department Faculty Works

The geographic distribution of genetic diversity in malaria parasite populations (Apicomplexa: Haemosporida) presumably influences local patterns of virulence and the evolution of host‐resistance, but little is known about population genetic structure in these parasites. We assess the distribution of genetic diversity in the partial Domain I of apical membrane antigen 1 (AMA1) in three mtDNA‐defined lineages of avian Plasmodium to determine spatial population structure and host–parasite genetic relationships. We find that one parasite lineage is genetically differentiated in association with a single host genus and among some locations, but not with respect to other hosts. Two other parasite lineages are …

Wyoming Wildlife: A Natural History, Paul Johnsgard, Thomas D. Mangelsen

Zea E-Books Collection

This book surveys Wyoming’s mammal, bird, reptile, and amphibian faunas. In addition to introducing the state’s geography, geology, climate, and major ecosystems, it provides 65 biological profiles of 72 mammal species, 195 profiles of 196 birds, 9 profiles of 12 reptiles, and 6 profiles of 9 amphibians. There are also species lists of Wyoming’s 117 mammals, 445 birds, 22 reptiles, and 12 amphibians. Also included are descriptions of nearly 50 national and state properties, including parks, forests, preserves, and other public-access natural areas in Wyoming. The book includes a text of more than 150,000 words, nearly 700 references, a glossary …

Estimating Offsets For Avian Displacement Effects Of Anthropogenic Impacts, Jiill A. Shaffer, Charles R. Loesch, Deborah A. Buhl

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Biodiversity offsetting, or compensatory mitigation, is increasingly being used in temperate grassland ecosystems to compensate for unavoidable environmental damage from anthropogenic developments such as transportation infrastructure, urbanization, and energy development. Pursuit of energy independence in the United States will expand domestic energy production. Concurrent with this increased growth is increased disruption to wildlife habitats, including avian displacement from suitable breeding habitat. Recent studies at energy-extraction and energy-generation facilities have provided evidence for behavioral avoidance and thus reduced use of habitat by breeding waterfowl and grassland birds in the vicinity of energy infrastructure. To quantify and compensate for this loss in …

A Comparative Analysis Of Planetscope And Sentinel Sentinel-2 Space-Borne Sensors In Mapping Striga Weed Using Guided Regularised Random Forest Classification Ensemble, B. T. Mudereri, T. Dube, E. M. Adel-Rahman, S. Niassy, E. Kimathi, Z. Khan, T. Landmann

All Peer-Reviewed Publications

Weeds are one of the major restrictions to sustaining crop productivity. Weeds often outcompete crops for nutrients, soil moisture, solar radiation, space and provide platforms for breeding of pests and diseases. The ever-growing global food insecurity triggers the need for spatially explicit innovative geospatial technologies that can deliver timely detection of weeds within agro-ecological systems. This will help pinpoint maize fields to be prioritized for weed control. Satellite remote sensing offers incomparable opportunities for precision agriculture, ecological applications and vegetation characterisation, with vast socioeconomic benefits. This work compares and evaluates the strength of Sentinel-2 (S2) satellite with the constellation of …

Tree Canopy Cover And Potential In Portland, Or: A Spatial Analysis Of The Urban Forest And Capacity For Growth, Jeff Ramsey

Dissertations and Theses

Urban forests have positive impacts on human and ecosystem health, reduce stress on aging stormwater infrastructure, increase property values, and reduce energy consumption. The scale of these benefits ranges from the hyper-local to the global. While the benefits of urban forests can extend well beyond the boundaries of cities, they often do not reach all residents of the city equally. Urban forest policies do not adequately address environmental equity or employ planting strategies with knowledge of the social and political factors that determine the spatial variations of tree canopy extent in cities. Chapter I analyzes the determinants of current canopy …

Any Port In A Storm: Vessel Activity And The Risk Of Iuu-Caught Fish Passing Through The World’S Most Important Fishing Ports, Gilles Hosch, Bradley Soule, Max Schofield, Trevor Thomas, Charles Kilgour, Tim Huntington

Journal of Ocean and Coastal Economics

This study assesses the risk of fish from illegal, unregulated and unreported (IUU) sources passing through the world’s most important fishing ports and explores the drivers of this risk.

Like previous studies it has attempted to rank ports and States based on landings and vessel visits reported by governments by using Automatic Identification System (AIS) positional data transmitted by fishing and fish carrier vessels to identify the locations of ports and rank them based on the frequency of visits by foreign-flagged and domestic-flagged vessels. It advances our thinking in that (i) the analysis includes an estimation of the hold capacity …

Attendance Trends Threaten Future Operations Of America’S State Park Systems, Jordan Smith, Emily J. Wilkins, Yu-Fai Leung

Environment and Society Faculty Publications

This research examines how the operating expenditures of America’s state park systems will be affected by a continued growth in attendance consistent with observed trends as well as potential climate futures. We construct a longitudinal panel dataset (1984–2017) describing the operations and characteristics of all 50 state park systems. These data are analyzed with a time-varying stochastic frontier model. Estimates from the model are used to forecast operating expenditures to midcentury under four different scenarios. The first scenario assumes annual attendance within each state park system will continue to grow (or decline) at the same average annual rate that it …

Bird Monitoring At Homestead National Monument Of America, Nebraska, Status Report 2009–2017, David G. Peitz, Lloyd W. Morrison, Kristen L. Mecke

United States National Park Service: Publications

Executive Summary

In 2009, the Heartland Inventory Monitoring Network initiated breeding bird surveys on Homestead National Monument of America, Nebraska, to address two objectives: (1) to monitor changes in bird community composition and abundance, and (2) to improve our understanding of relationships between breeding birds and habitat, and the effects of management actions on those relationships. This report evaluates trends in the park’s breeding bird populations in the context of trends observed within the North American Bird Conservation Initiative’s (NABCI) Central Mixed Grass Prairie Bird Conservation Region, the region in which the park is located. By doing so, we can …

Bird Monitoring At Herbert Hoover National Historic Site, Iowa, Status Report 2005–2017, David G. Peitz, Lloyd W. Morrison, Kristen L. Mecke

United States National Park Service: Publications

Executive Summary

In 2005, the Heartland Inventory & Monitoring Network initiated breeding bird surveys on Herbert Hoover National Historic Site, Iowa, to address two objectives: (1) to monitor changes in bird community composition and abundance, and (2) to improve our understanding of relationships between breeding birds and habitat, and the effects of management actions on those relationships. This report evaluates trends in the park’s breeding bird populations in the context of trends observed within the North American Bird Conservation Initiative’s (NABCI) Eastern Tallgrass Prairie Bird Conservation Region , the region in which the park is located. By doing so, we …

Graduate Internship Report - The Accelerated Schools, Los Angeles, Michael Zappulla

Agricultural Education: Graduate Internship Reports

This document focuses on the introduction of an agriculture program into an urban middle school. Current status, improvements made, and future improvements are all included and addressed. The internship project shows the creation of a school garden and farmers market program with support from local businesses and associations.

Size, Shape, And Sexual Dimorphism Of Island And Mainland Melanerpes Woodpeckers Of The Centurus Clade, Lee Michelle Silva Núñez

Loma Linda University Electronic Theses, Dissertations & Projects

Island ecosystems are widely studied as "natural laboratories” for biological change. Animals that colonize islands frequently exhibit differences from their mainland counterparts in morphology, physiology, and behavior. Some of the most striking features include changes in body size and shape, with extreme examples being dwarfism, gigantism, and flightlessness. These changes are generally driven by isolation and reduction in predators and competitors. The 10 woodpecker species belonging to the Centurus clade of genus Melanerpes are ideally suited to study evolutionary changes associated with island conditions because they include numerous populations restricted to islands, allowing comparisons among island and continent ecosystems. To …

Assessing The Utility Of Conserving Evolutionary History, Caroline M. Tucker, Tracy Aze, Marc W. Cadotte, Juan L. Cantalapiedra, Chelsea Chisholm, Sandra Díaz, Richard Grenyer, Danwei Huang, Florent Mazel, William D. Pearse, Matthew W. Pennell, Marten Winter, Arne O. Mooers

Ecology Center Publications

It is often claimed that conserving evolutionary history is more efficient than species‐based approaches for capturing the attributes of biodiversity that benefit people. This claim underpins academic analyses and recommendations about the distribution and prioritization of species and areas for conservation, but evolutionary history is rarely considered in practical conservation activities. One impediment to implementation is that arguments related to the human‐centric benefits of evolutionary history are often vague and the underlying mechanisms poorly explored. Herein we identify the arguments linking the prioritization of evolutionary history with benefits to people, and for each we explicate the purported mechanism, and evaluate …

The Use Of Geospatial Modeling And Novel Diagnostics To Detect And Map Risk Factors Of Soil-Transmitted Helminths In Feira De Santana, Brazil, Ryan Harry Avery

LSU Doctoral Dissertations

Soil-transmitted helminth (STH) infections impact billions of people worldwide. The traditional STH control approach is a morbidity control strategy implementing mass drug administration (MDA) programs targeting school-aged children (SAC). In Brazil, this control strategy has decreased STH prevalence to less than 20% in most of the country and providing an opportunity to transition from the morbidity control program and towards a surveillance and response system geared towards STH elimination. Surveillance and response systems geared towards elimination require the implementation higher accuracy diagnostics to detect infection in low-transmission communities, surveillance of entire households, high-resolution modeling at the household-habitat scale, and targeted …

Rediscovery Of The Endangered Carchi Andean Toad, Rhaebo Colomai (Hoogmoed, 1985), In Ecuador, With Comments On Its Conservation Status And Extinction Risk, Carolina Reyes-Puig, Gabriela B. Bittencourt-Silva, María Torres-Sánchez, Mark Wilkinson, Jeffrey W. Streicher, Simon T. Maddock, Ramachandran Kotharambath, Hendrik Müller, Francesca Nicole Angiolani Larrera, Diego Amieda-Reinoso, Santiago R. Ron, Diego Francisco Cisneros-Heredia

Neuroscience Faculty Publications

Since 1984 there have been no records of Rhaebo colomai (Hoogmoed, 1985) within the territory of Ecuador. This species was known from 2 localities in the province of Carchi, northwestern Ecuador, and the department of Nariño, southwestern Colombia, which were reported in 1979 and 2015, respectively. We report the recent sightings of R. colomai at 3 new localities in Ecuador and discuss and evaluate this species’ extinction risk and conservation status.

Fallen Pillars: The Past, Present, And Future Population Dynamics Of A Rare, Specialist Coral–Algal Symbiosis, Andrea Chan, Cynthia L. Lewis, Karen L. Neely, Iliana B. Baums

Marine & Environmental Sciences Faculty Articles

With ongoing changes in climate, rare and ecologically specialized species are at increased risk of extinction. In sessile foundation fauna that reproduce asexually via fragmentation of existing colonies, the number of colonies does not reflect the number of genets and thus can obscure genotypic diversity. Colonies that are the product of fragmentation are not visually distinguishable from colonies that stem from sexual recruits. For this reason, molecular markers are necessary to assess genotypic variation and population structure in clonal organisms such as reef-building corals and their endosymbiotic dinoflagellates. For the rare Caribbean pillar coral, Dendrogyra cylindrus, and its endosymbiotic …

A Case-Study Approach To Investigate Transmission, Co-Infection, And Clinical Sequelae During Epidemics Of Dengue And Ebola Virus Disease, Jennifer Elizabeth Giovanni

LSU Doctoral Dissertations

From within their ecologic niches, zoonotic viruses emerge from animal reservoirs into the edges and centers of human habitation to exploit opportunities for unabated transmission within immunologically–naïve populations. Our understanding of where, in whom, and how these viruses emerge is under direct challenge, driving the evolution of modern infectious disease epidemiology within a rapidly-connected global community. The studies presented herein are based on analyses of both aggregate and case-level data, which, we argue, provide unique insight into the complexities of transmission, co-infection, and clinical sequelae occurring within, and arising from, epidemics of emerging zoonotic viruses. In Chapter II, we investigate …

Redesign, Field-Testing, And Validation Of The Physical Activity Campus Environmental Supports (Paces) Audit, Tanya M. Horacek Phd, Rd, Elif Dede Yildirim, Dean Seidman, Carol Byrd-Bredbenner, Sarah Colby, Adrienne A. White, Karla P. Shelnutt, Melissa D. Olfert, Anne E. Mathews, Kristin Riggsbee, Lisa Franzen-Castle, Jesse Stabile Morrell, Kendra Kattelmann

Department of Nutrition and Health Sciences: Faculty Publications

+is paper describes the redesign, field-testing, and convergent validity of a practical tool—Physical Activity Campus Environmental Supports (PACES) audit. Methods. +eaudit includes two parts: (1) PACES-Programs, which is comprised of questions regarding populations served, fees, programs (recreation/fitness classes and intramurals), proximity, adequacy of facilities, and marketing, and (2) PACES-Facilities, which is comprised of questions regarding built environment (aesthetics, bike racks, stairs, and universal design), recreation equipment, staff, amenities, and access. Each item criterion is specifically scored using a fivepoint, semantic-differential scale ranging from limited to extensive environmental support. A few questions utilize select all that apply for a summed score. …

Examining Genetic And Ecological Differentiation Of An Endemic Plant Species Found Across The Hawaiian Archipelago, Psychotria Mariniana, Tiffany L. Kho

Master's Theses

Speciation is a fundamental evolutionary process that remains poorly understood. Speciation ultimately begins with population divergence, so we can elucidate the complexities of speciation by first understanding the process and drivers of population divergence. To conduct population-level analyses, ecologists and evolutionary biologists have turned to island systems, primarily for their geographic orientation and high endemism. The Hawaiian archipelago is home to over 8,700 endemic species making it a great natural laboratory to study species diversification at the population level. The Hawaiian Psychotria (kōpiko, or wild coffee) make up 11 of these species and have been used to understand colonization and …

Mapping A New Disease Resistance Locus In An F1 Progeny Derived From Two Grape Wild Relatives, Gaurab Bhattarai

Graduate Theses/Dissertations

Linkage maps and quantitative trait loci (QTL) analysis have become essential tools for the positional cloning of agronomically important genes and for marker-assisted breeding. In this study, two North American grape species, Vitis rupestris and Vitis riparia, and their 294 F₁ progeny were used to construct parental linkage maps and to perform QTL analysis for downy mildew resistance. Single nucleotide polymorphism (SNP) discovery was accomplished using genotyping-by-sequencing (GBS) and resulted in 348,888 SNPs. Of these, 11,063 informative SNP markers (3.17% of the original SNP dataset) were derived after filtering for various quality parameters and missing data. A two-way …

Additional Thoughts On Rigor In Wildlife Science: Unappreciated Impediments, John A. Bissonette

Wildland Resources Faculty Publications

Traditionally, most scientists accepted reductionist and mechanistic approaches as the rigorous way to do science. Sells et al. (2018) recently raised the argument about reliability in wildlife science. Chamberlin (1890), Platt (1964), Romesburg (1981, 1991, 2009), and Williams (1997) were rightly referenced as very influential papers. My intention in this letter is not to refute the essence of the Sells et al. (2018) commentary but to add seldom addressed but important aspects that influence the attainment of rigor and certainty in wildlife studies. The elements of …