Digital Commons Network^™

Plasticity In The Human Gut Microbiome Defies Evolutionary Constraints, Andres Gomez, Ashok Kumar Sharma, Elizabeth K. Mallott, Klara J. Petrzelkova, Carolyn A. Jost Robinson, Carl J. Yeoman, Franck Carbonero, Barbora Pafco, Jessica M. Rothman, Alexander Ulanov, Klara Vickova, Katherine R. Amato, Stephanie L. Schnorr, Nathaniel J. Dominy, David Modry, Angelique Todd, Manolito Torralba, Karen E. Nelson, Michael B. Burns, Ran Blekhman, Melissa Remis, Rebecca M. Stumpf, Brenda A. Wilson, H. Rex Gaskins, Paul A. Garber, Bryan A. White, Steven R. Leigh

Anthropology Faculty Research

The gut microbiome of primates, including humans, is reported to closely follow host evolutionary history, with gut microbiome composition being specific to the genetic background of its primate host. However, the comparative models used to date have mainly included a limited set of closely related primates. To further understand the forces that shape the primate gut microbiome, with reference to human populations, we expanded the comparative analysis of variation among gut microbiome compositions and their primate hosts, including 9 different primate species and 4 human groups characterized by a diverse set of subsistence patterns (n = 448 samples). The results …

Main And Interactive Effects Of Increased Precipitation And Nitrogen Addition On Growth, Morphology, And Nutrition Of Cinnamomum Burmanni Seedlings In A Tropical Forest, Jun Wang, Dafeng Hui, Hongfang Lu, Faming Wang, Nan Liu, Zhongyu Sun, Hai Ren

Biology Faculty Research

Global change such as altered precipitation patterns and increased atmospheric nitrogen (N) deposition will have significant impacts on seedling growth during plant recruitment. However, how interactive effects of increased precipitation and N deposition on forest seedling performance have not been well investigated. In this study, we conducted a two-year field experiment that manipulating precipitation amount (ambient rainfall and 25% increment during the wet season) and exogenous N addition (0 and 100 kg ha−1 yr−1) in a tropical secondary forest. Seedling growth, morphology and nutritional status of a dominant tree species (Cinnamomum burmanni) were measured. Results showed that increased precipitation had …

Persistence And Turnover In Desert Plant Communities During A 37-Yr Period Of Land Use And Climate Change, Scott R. Abella, Ross J. Guida, Chris L. Roberts, Carrie M. Norman, James S. Holland

Life Sciences Faculty Research

Understanding long‐term changes in ecological communities during global change is a priority for 21st‐century ecology. Deserts, already at climatic extremes, are of unique interest because they are projected to be ecosystems most responsive to global change. Within a 500‐km2 landscape in the Mojave Desert, USA, we measured perennial plant communities at 100 sites three times (1979, 2008, and 2016) during 37 yr to evaluate six hypotheses of community change. These hypotheses encompassed shifts in community measures (e.g., diversity, cover) and species elevational distributions, biotic homogenization, disproportionately large change at the highest elevations, relationships between turnover and species’ responses to disturbance …

The Traits That Predict The Magnitude And Spatial Scale Of Forest Bird Responses To Urbanization Intensity, Grant D. Paton, Alexandra V. Shoffner, Andrew M. Wilson, Sara A. Gagné

Environmental Studies Faculty Publications

As humans continue moving to urban areas, there is a growing need to understand the effects of urban intensification on native wildlife populations. Forest species in remnant habitat are particularly vulnerable to urban intensification, but the mechanisms behind these effects are poorly understood. An understanding of how species traits, as proxies for mechanisms, mediate the effects of urban intensification on forest species can help fill this knowledge gap. Using a large point count dataset from the Second Pennsylvania Breeding Bird Atlas, we tested for the effects of species traits on the magnitude and spatial scale of the responses of 58 …

Timing And Potential Drivers Of Symbiont Selection In The Early Life Stages Of The Massive Starlet Coral Siderastrea Siderea, Sarah G. Koerner

HCNSO Student Theses and Dissertations

The ability of corals to build reefs can be attributed to their relationship with single-celled algae of the familySymbiodiniaceae.Through the process of photosynthesis, these algae can provide their coral hosts with over 90% of their daily energy requirements. Most coral species acquire multiple species of symbionts from the surrounding water during their larval stage or immediately after settling. However, over time, the coral will select a dominant symbiont speciesthat can depend on the local environment. Until this study, the size or age of the coral at which this transition from multiple Symbiodiniaceaespecies to one dominant species occurs has remained …

The Role Of Citizenship Status And Its Impact On Latinos’ Civic Engagement In The United States, Veronica Torres Luna

CrissCross

This paper discusses the way in which U.S. citizenship status and legal permanent resident status impacts the likelihood of involvement in civic engagement activities among Latinos in the United States. Past research has looked into various variables such as group consciousness, Spanish-media language, and importance of issues; however, specific research on citizenship status is limited. This paper analyzes data from the Pew Research Center and data obtained from individual interviews in the Midwest. The results show that citizens are more likely than residents to be involved in the community and politics. These findings have important implications in how policies are …

Mixing It Up: The Impact Of Episodic Introgression On The Evolution Of High-Latitude Mesocarnivores, Jocelyn P. Colella

Biology ETDs

At high latitudes, climatic oscillations have triggered repeated episodes of organismal divergence by geographically isolating populations. For terrestrial species, extended isolation in glacial refugia – ice-free regions that enable terrestrial species persistence through glacial maxima – is hypothesized to stimulate allopatric divergence. Alternatively, upon glacial recession, divergent populations expanded from independent glacial refugia and often contacted other diverging populations. In the absence of reproductive isolating mechanisms, this biogeographic process may trigger hybridization and ultimately, gene flow between divergent taxa. My dissertation research aims to understand how these episodic periods of isolation and contact have impacted the evolution of high latitude …

Characterizing Boreal Peatland Plant Composition And Species Diversity With Hyperspectral Remote Sensing, Mara Y. Mcpartland, Michael J. Falkowski, Jason R. Reinhardy, Evan Kane, Randall K Kolka, Merritt R. Turetsky, Et Al.

Michigan Tech Publications, Part 1

Peatlands, which account for approximately 15% of land surface across the arctic and boreal regions of the globe, are experiencing a range of ecological impacts as a result of climate change. Factors that include altered hydrology resulting from drought and permafrost thaw, rising temperatures, and elevated levels of atmospheric carbon dioxide have been shown to cause plant community compositional changes. Shifts in plant composition affect the productivity, species diversity, and carbon cycling of peatlands. We used hyperspectral remote sensing to characterize the response of boreal peatland plant composition and species diversity to warming, hydrologic change, and elevated CO₂. …

An Examination Of Non-Waged Labor And Local Food Movement Growth In The Southern Appalachians, Amy Kathryn Marion

Dissertations and Theses

Farmers have traditionally depended on their families or paid employees to cover their extensive labor needs. Today, non-waged labor models are gaining popularity, especially among small, ecologically-oriented farms. Apprenticeships and internships can be a primary form of training for a population of new and beginning farmers, many of whom are entering the field without farming backgrounds. However, many question the sustainability and justness of these arrangements. As a new phenomenon, very little research examines the relationship between non-waged labor models like agricultural apprenticeships and alternative food movements. In this exploratory study, the author surveyed nearly 250 farmers growing for local …

2019 - Monterey County Historical Society - Hornbeck Collection - Documents And Research Inventory

Related Research and Documents

Research and documents accumulated by Dr. David Hornbeck throughout his career pertaining to the history of California, the inhabitants, colonization and missions that he donated to the Monterey County Historical Society.

Do Genetic Differences Explain The Ability Of An Alkaline Shrub To Grow In Both Uplands And Wetlands?, Carol A. Rowe, Paul G. Wolf, Robert W. Lichvar

Biology Faculty Publications

The hydrophyte Allenrolfea occidentalis (S. Watson) Kuntze (iodinebush) is a halophytic shrub of the arid southwest that is listed as a facultative wetland species on the National Wetland Plant List. This rating means that the species is usually a hydrophyte but occasionally is found in uplands. We tested for genetic (ecotypic) differences between plants sampled from wetlands versus uplands. We used the technique of genotyping by sequencing to generate data from 132 plants from 30 locations representing both wetland and upland occurrences for over 1300 loci. Analyses indicated that the strongest genetic signal is from differences in geographic distribution: samples …

Willingness To Pay Of Nigerian Poultry Producers And Feed Millers For Aflatoxin-Safe Maize, Andrew M. Johnson, Tahirou Abdoulaye, Bamikole Ayedun, Joan R. Fulton, Nicole Olynk Widmar, Akande Adebowale, Ranajit Bandyopadhyay, Victor Manyong

Department of Agricultural Economics Faculty Publications

Dietary aflatoxin exposure is a widespread problem in the developing world and causes severe negative health consequences to humans and livestock animals. A new biological control product, called Aflasafe, has been introduced in Nigeria to mitigate aflatoxin contamination of maize in the field and in storage. No known prior work has estimated how much African agribusinesses using maize for animal feed will pay for aflatoxin-safe maize. This study measured the levels of Aflasafe awareness, surveyed current aflatoxin management practices, and estimated, using choice experiments, willingness to pay (WTP) for aflatoxin-safe maize by Nigerian poultry producers and feed millers. Data was …

Contributions Of Fire Refugia To Resilient Ponderosa Pine And Dry Mixed‐Conifer Forest Landscapes, Jonathan D. Coop, Timothy J. Delory, William M. Downing, Sandra L. Haire, Meg A. Krawchuk, Carol Miller, Marc-André Parisien, Ryan B. Walker

Biology Faculty Publications

Altered fire regimes can drive major and enduring compositional shifts or losses of forest ecosystems. In western North America, ponderosa pine and dry mixed‐conifer forest types appear increasingly vulnerable to uncharacteristically extensive, high‐severity wildfire. However, unburned or only lightly impacted forest stands that persist within burn mosaics—termed fire refugia—may serve as tree seed sources and promote landscape recovery. We sampled tree regeneration along gradients of fire refugia proximity and density at 686 sites within the perimeters of 12 large wildfires that occurred between 2000 and 2005 in the interior western United States. We used generalized linear mixed‐effects models to elucidate …

Environmental Foundations Of Typhoid Fever In The Fijian Residential Setting, Aaron P. Jenkins, Stacy D. Jupiter, Adam Jenney, Alanieta Naucukidi, Namrata Prasad, Gandercillar Vosaki, Kim Mulholland, Richard Strugnell, Mike Kama, John A. Crump, Pierre Horwitz

Research outputs 2014 to 2021

Proximal characteristics and conditions in the residential setting deserve greater attention for their potential to influence typhoid transmission. Using a case-control design in Central Division, Republic of Fiji, we examined bacterial (coliform and Escherichia coli) contamination and chemical composition of water and soil as potential vehicles of exposure to Salmonella Typhi, combining observational analysis of residential living conditions, geospatial analysis of household locations, and factor analysis to explore multivariate associations with the risk of developing typhoid fever. Factors positively associated with typhoid infection related to drainage [phosphate (OR 4.235, p = 0.042) and E. coli concentrations (OR 2.248, p = …

The Multifaceted Effects Induced By Floods On The Macroinvertebrate Communities Inhabiting A Sinking Cave Stream, Octavian Pacioglu, Nicoleta Ianovici, Mărioara N. Filimon, Adrian Sinitean, Gabriel Iacob, Henrietta Barabas, Alexandru Pahomi, Andrei Acs, Hanelore Muntean, Lucian Pârvulescu

International Journal of Speleology

First-order sinking cave streams experience considerable hydrological variability, including spates and periods of base-flow during dry seasons. Early-summer flooding on a first-order stream sinking in Ciur-Ponor Cave (Romania) represented a suitable opportunity to test the response of the macroinvertebrate community and of basal food resources quantity and diversity to such a disturbance event. The invertebrate community and basal resources (i.e., woody debris, leaves, fine particulate organic matter and epilithon) were collected from three sampling sites, before and after the flood. The sampling strategy followed an up-downstream gradient of both species diversity and quantity of allochtonous organic matter decrease as the …

The Interaction Of Phylogeny And Community Structure: Linking The Community Composition And Trait Evolution Of Clades, William D. Pearse, Pierre Legendre, Pedro R. Peres-Neto, T. Jonathan Davies

Ecology Center Publications

Aim

Community phylogenetic studies use information about the evolutionary relationships of species to understand the ecological processes of community assembly. A central premise of the field is that the evolution of species maps onto ecological patterns, and phylogeny reveals something more than species traits alone about the ecological mechanisms structuring communities, such as environmental filtering, competition, and facilitation. We argue, therefore, that there is a need for better understanding and modelling of the interaction of phylogeny with species traits and community composition.

Innovation

We outline a new approach that identifies clades that are ecophylogenetically clustered or overdispersed and assesses whether …

Species-Area Model Predicting Diversity Loss In An Artificially Flooded Cave In Brazil, Rodrigo L. Ferreira, Thais G. Pellegrini

International Journal of Speleology

Subterranean environments are poorly known regarding many ecological aspects, such as community structure and its response to different disturbances. To estimate the effects of ground area lost in a limestone cave community in Southeastern Brazil, the invertebrate fauna was sampled before 76% of the cave floor was submerged by the filling of a hydroeletric power plant reservoir. Then, a 2-year monitoring was conducted. A species-area curve based on empiric data was constructed and the z-value of the species-area equation was calculated, what allowed estimating the expected cave richness after flooding comparing with data obtained during the monitoring. The results support …

Agricultural Education Teachers' Perceptions And Use Of Environmental Education In Louisiana Schools, Olivia M. Soler

LSU Master's Theses

The purpose of this study was to describe the status of environmental education (EE) in Louisiana high school agriculture classrooms. A census of Louisiana Agriscience Teacher Association (LATA) members was conducted to understand their perceptions, attitudes, and barriers regarding EE implementation. Icek Ajzen’s Theory of Planned Behavior was utilized as the theoretical framework. Data were collected through an online survey research method and analyzed using descriptive statistics. Results suggest that most LATA members incorporate EE into their curriculum relatively sparingly, perceive EE to be beneficial for students, and are in need of funding to incorporate EE into their curriculum as …

Growing South Dakota (Summer 2019), College Of Agriculture, Food And Environmental Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 3 Celebration of Faculty Excellence
[Page] 6 Ag and Biosystems Engineering - Quarter Scale Tractor Team Named Reserve National Champs - Jackrabbit Wrestler Passionate About Sharing the Story of Pork - Mesonet Spray Tool Aids Precision Application Decisions
[Page] 10 Ag Business and Economics -POET Commodity Trading Fund
[Page] 12 Ag Education, Communication and Leadership - Leadership Opportunities Launch Recent Graduate to Career Readiness
[Page] 14 Agronomy, Horticulture & Plant Science - Local Foods Education Center Donates Over 5,000 Pumpkins - Seeding Success - Doug Malo Retires After 43 Years of Teaching - Howard Woodard's 29-Year Career Had a …

Tallgrass Prairie Center Newsletter, Summer 2019, University Of Northern Iowa. Tallgrass Prairie Center.

Tallgrass Prairie Center Newsletter

Inside This Issue:
-- Irvine Prairie
-- Friends of the Tallgrass Prairie Center
-- 2019 Prairie on Farms Field Days
-- Prairie Root Banners
-- County Seed Pick Up
-- Student Research
-- New Staff at the TPC
-- Green Iowa Americorps Land & Water Stewards
-- Iowa's Noxious Weed Law Updated & Improved
-- Honors & Awards
-- Visitors & Community Meetings
-- Ensuring Access to High Quality Native Seed: Lessons Learned from the CRP Pollinator Initiative
-- Save the Date
-- Tallgrass Prairie Center Celebrates 20 Years!

Temporal And Spatial Dynamics Of Competitive Parapatry In Chewing Lice, David J. Hafner, Mark S. Hafner, Theresa A. Spradling, Jessica E. Light, James W. Demastes

Faculty Work

We synthesize observations from 1979 to 2016 of a contact zone involving two subspecies of pocket gophers (Thomomys bottae connectens and T. b. opulentus) and their respective chewing lice (Geomydoecus aurei and G. centralis) along the Rio Grande Valley in New Mexico, U.S.A., to test predictions about the dynamics of the zone. Historically, the natural flood cycle of the Rio Grande prevented contact between the two subspecies of pocket gophers. Flood control measures completed in the 1930s permitted contact, thus establishing the hybrid zone between the pocket gophers and the contact zone between their lice (without hybridization). Since that time, …

Temporal And Spatial Dynamics Of Competitive Parapatry In Chewing Lice, Mark S. Hafner

Faculty Publications

We synthesize observations from 1979 to 2016 of a contact zone involving two subspecies of pocket gophers (Thomomys bottae connectens and T. b. opulentus) and their respective chewing lice (Geomydoecus aurei and G. centralis) along the Rio Grande Valley in New Mexico, U.S.A., to test predictions about the dynamics of the zone. Historically, the natural flood cycle of the Rio Grande prevented contact between the two subspecies of pocket gophers. Flood control measures completed in the 1930s permitted contact, thus establishing the hybrid zone between the pocket gophers and the contact zone between their lice (without hybridization). Since that time, …

Persistence Of A Geographically-Stable Hybrid Zone In Puerto Rican Dwarf Geckos, Brendan J. Pinto, James Titus-Mcquillan, Juan D. Daza, Tony Gamble

Biological Sciences Faculty Research and Publications

Determining the mechanisms that create and maintain biodiversity is a central question in ecology and evolution. Speciation is the process that creates biodiversity. Speciation is mediated by incompatibilities that lead to reproductive isolation between divergent populations and these incompatibilities can be observed in hybrid zones. Gecko lizards are a speciose clade possessing an impressive diversity of behavioral and morphological traits. In geckos, however, our understanding of the speciation process is negligible. To address this gap, we used genetic sequence data (both mitochondrial and nuclear markers) to revisit a putative hybrid zone between Sphaerodactylus nicholsi and Sphaerodactylus townsendi in Puerto Rico, …

Targeting A Highly Repeated Germline Dna Sequence For Improved Real-Time Pcr-Based Detection Of Ascaris Infection In Human Stool, Nils Pilotte, Jacqueline R.M.A. Maasch, Alice V. Easton, Eric Dahlstrom, Thomas B. Nutman, Steven A. Williams

Biological Sciences: Faculty Publications

Background: With the expansion of soil transmitted helminth (STH) intervention efforts and the corresponding decline in infection prevalence, there is an increased need for sensitive and specific STH diagnostic assays. Previously, through next generation sequencing (NGS)-based identification and targeting of non-coding, high copy-number repetitive DNA sequences, we described the development of a panel of improved quantitative real-time PCR (qPCR)-based assays for the detection of Necator americanus, Ancylostoma duodenale, Ancylostoma ceylanicum, Trichuris trichiura, and Strongyloides stercoralis. However, due to the phenomenon of chromosome diminution, a similar assay based on high copy-number repetitive DNA was not developed for the detection of Ascaris …

The Molecular Biogeography Of The Indo-Pacific: Testing Hypotheses With Multispecies Genetic Patterns, Eric D. Crandall, Cynthia Riginos, Chris E. Bird, Libby Liggins, Eric Treml, Maria Beger, Paul H. Barber, Sean R. Connolly, Peter F. Cowman, Joseph D. Dibattista, Jeff A. Eble, Sharon F. Magnuson, John B. Horne, Marc Kochzius, Harilaos A. Lessios, Shang Yin Vanson Liu, William B. Ludt, Hawis Madduppa, John M. Pandolfi, Robert J. Toonen, Michelle R. Gaither

Faculty Publications

Aim: To test hypothesized biogeographic partitions of the tropical Indo-Pacific Ocean with phylogeographic data from 56 taxa, and to evaluate the strength and nature of barriers emerging from this test.

>Location: The Indo-Pacific Ocean.

Time Period: Pliocene through the Holocene.

Major Taxa Studied: Fifty-six marine species.

Methods: We tested eight biogeographic hypotheses for partitioning of the Indo-Pacific using a novel modification to analysis of molecular variance. Putative barriers to gene flow emerging from this analysis were evaluated for pairwise Φ_ST, and these Φ_ST distributions were compared to distributions from randomized datasets and …

Host Genetics And Geography Influence Microbiome Composition In The Sponge Ircinia Campana, Sarah M. Griffiths, Rachael E. Antwis, Luca Lenzi, Anita Lucaci, Donald C. Behringer, Mark J. Butler, Richard F. Preziosi

Biological Sciences Faculty Publications

1. Marine sponges are host to large, diverse communities of microorganisms. These microbiomes are distinct among sponge species and from seawater bacterial communities, indicating a key role of host identity in shaping its resident microbial community. However, the factors governing intraspecific microbiome variability are underexplored, and may shed light on the evolutionary and ecological relationships between host and microbiome.

2. Here, we examined the influence of genetic variation and geographic location on the composition of the Ircinia campana microbiome.

3. We developed new microsatellite markers to genotype I. campana from two locations in the Florida Keys, USA, and characterised their …

Complex History Of Codiversification And Host Switching Of A Newfound Soricid-Borne Orthohantavirus In North America, Schuyler W. Liphardt, Hae Ji Kang, Laurie J. Dizney, Luis A. Ruedas, Joseph A. Cook, Richard Yanagihara

Biology Faculty Publications and Presentations

Orthohantaviruses are tightly linked to the ecology and evolutionary history of their mammalian hosts. We hypothesized that in regions with dramatic climate shifts throughout the Quaternary, orthohantavirus diversity and evolution are shaped by dynamic host responses to environmental change through processes such as host isolation, host switching, and reassortment. Jemez Springs virus (JMSV), an orthohantavirus harbored by the dusky shrew (Sorex monticola) and five close relatives distributed widely in western North America, was used to test this hypothesis. Total RNAs, extracted from liver or lung tissue from 164 shrews collected from western North America during 1983–2007, were analyzed for orthohantavirus …

School Of Biological Sciences News, 2019, School Of Biological Sciences

School of Biological Sciences News

Alumni newsletter of Illinois State University's School of Biological Sciences.

Estimating Historical Forest Density From Land‐Survey Data: A Response To Baker And Williams (2018), Carrie R. Levine, Charles V. Cogbill, Brandon M. Collins, Andrew J. Larson, James A. Lutz, Malcolm P. North, Christina M. Restaino, Hugh D. Safford, Scott L. Stephens, John J. Battles

Wildland Resources Faculty Publications

In the Western United States, historical forest conditions are used to inform land management and ecosystem restoration goals (North et al. 2009, Stephens et al. 2016). This interest is based on the premise that historical forests were resilient to ecological disturbances (Keane et al. 2018). Researchers throughout the United States have used the General Land Office (GLO) surveys of the late 19th and early 20th centuries to estimate historical forest conditions (Bourdo 1956, Schulte and Mladenoff 2001, Cogbill et al. 2002, Paciorek et al. 2016). These surveys were conducted throughout the United States …

Geographic And Climatic Attributions Of Autumn Land Surface Phenology Spatial Patterns In The Temperate Deciduous Broadleaf Forest Of China, Weiguang Lang, Xiaoqiu Chen, Liang Liang, Shilong Ren, Siwei Qian

Geography Faculty Publications

Autumn vegetation phenology plays a critical role in identifying the end of the growing season and its response to climate change. Using the six vegetation indices retrieved from moderate resolution imaging spectroradiometer data, we extracted an end date of the growing season (EOS) in the temperate deciduous broadleaf forest (TDBF) area of China. Then, we validated EOS with the ground-observed leaf fall date (LF) of dominant tree species at 27 sites and selected the best vegetation index. Moreover, we analyzed the spatial pattern of EOS based on the best vegetation index and its dependency on geo-location indicators and seasonal temperature/precipitation. …