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Connection Between Contaminants And Marine Mammals In The Southern Ocean, Sean W. Tupper

All HCAS Student Capstones, Theses, and Dissertations

The Southern Ocean encircles the continent of Antarctica and was once thought to be unaffected by human activities. However, evidence is increasing that this region has many different contaminants that threaten the region’s marine biodiversity, including marine mammals. Many of these contaminants are heavy metals or persistent organic pollutants and enter the Southern Ocean via both natural and anthropogenic processes. The impacts posed by these contaminants vary according to their type and the organism being exposed. All species of cetaceans and pinnipeds in this study were confirmed to have been exposed to one or more the contaminants reviewed. Although research …

Sexual Dimorphism In Host Innate Response To Staphylococcus Aureus: Mechanisms Driving Sex Differences In Immune Cell Function And Host-Directed Interventions, Srijana Pokhrel

Biomedical Sciences ETDs

With the emerging antibiotic resistance, Staphylococcus aureus, primary causative agent of skin and soft tissue infections (SSTIs) as well as other life-threatening conditions has become a global health concern. While factors contributing to host defense against S. aureus SSTIs has been well studied, impact of sex as a variable has not been reported. In Chapter 2, we uncover the sex-specific differences in host response to S. aureus SSTIs and the contribution of female sex hormone, estrogen (E2) in providing protection in females. In Chapter 3, we identify mechanisms of innate differences in neutrophils bactericidal efficacy between sexes and in …

Predicting Effects Of Climate Change On Productivity And Persistence Of Forest Trees, Russell D. Kramer, H. Roaki Ishii, Kelsey R. Carter, Yuko Miyazaki, Molly A. Cavaleri, Masatake G. Araki, Wakana A. Azuma, Yuta Inoue, Chinatsu Hara

Michigan Tech Publications, Part 1

Global climate change increases uncertainty in sustained functioning of forest ecosystems. Forest canopies are a key link between terrestrial ecosystems, the atmosphere, and climate. Here, we introduce research presented at the 66th meeting of the Ecological Society of Japan in the symposium “Structure and function of forest canopies under climate change.” Old-growth forest carbon stores are the largest and may be the most vulnerable to climate change as the balance between sequestration and emission could easily be tipped. Detailed structural analysis of individual large, old trees shows they are allocating wood to the trunk and crown in patterns that cannot …

Factors Affecting Metformin And Clomiphene’S Reproductive Efficacy In Pcos Women, Rita J. Poushuju, Ahmed I. El-Mallah, Lama T. Soubra, Lina N. Jarrah

BAU Journal - Health and Wellbeing

Polycystic Ovarian Syndrome (PCOS) is a heterogeneous multifactorial disorder in which the ovarian dysfunction is the main cause of an ovulatory infertility. Metformin and Clomiphene Citrate (CC) are two effective drugs to induce ovulation in these patients. The study aimed to ascertain the effect of obesity, serum insulin and free testosterone levels on fertility success with metformin and CC as first line approaches in PCOS. This clinical study was a retrospective multicenter cohort study conducted in nine gynecology and endocrinology clinics. It included (61) PCOS women, aged (18-32) years, having desire to conceive, and free from the study medications for …

Quantifying The Relative Importance Of Variation In Predation And The Environment For Species Coexistence, Lauren G. Shoemaker, Allison K. Barner, Leonora S. Bittleston, Ashley I. Teufel

Biology Faculty Publications and Presentations

Coexistence and food web theory are two cornerstones of the long‐standing effort to understand how species coexist. Although competition and predation are known to act simultaneously in communities, theory and empirical study of these processes continue to be developed largely independently. Here, we integrate modern coexistence theory and food web theory to simultaneously quantify the relative importance of predation and environmental fluctuations for species coexistence. We first examine coexistence in a theoretical, multitrophic model, adding complexity to the food web using machine learning approaches. We then apply our framework to a stochastic model of the rocky intertidal food web, partitioning …

Pilot Testing A Qualitative Methodology To Evaluate The Perceived Benefits And Stressors Of Sole-Dog Ownership In Full-Time College Students, Emma Williams

Animal Science Undergraduate Honors Theses

The number of individuals acquiring pets is continually increasing, with 71.5% of Americans owning a pet in 2012. Companion animals are a huge source of benefits but owning them can also come with several stressors. However, little research has been conducted on the negative aspects of dog ownership. This pilot test evaluates the perceived stressors and benefits of sole dog ownership in full-time college students. The pilot aimed to hold three focus groups from which qualitative thematic data were collected and quantitative were collected from a demographic survey of participants. Participants were asked a series of questions about sole dog …

Habitat Features And Behavioral Plasticity Promote Barred Owl Presence In Developed Landscapes, Marion Alice Clement

All Theses

Despite extensive accounts in the literature describing Barred Owls (Strix varia) as obligate forest-interior species that are sensitive to development, Barred Owls have increasingly been found in urbanized landscapes. Due to the limited number of studies on Barred Owls within the context of development, our understanding of the processes that facilitate Barred Owls within anthropogenic landscapes is limited. In the Piedmont region of the southeastern United States, South Carolina, the presence of Barred Owls in suburbs and small-town centers precipitated our research team to examine which habitat features facilitate their occurrence near development.

We conducted surveys using callbacks and autonomous …

Isotope-Based Methods For Evaluating Fish Trophic Geographies, Julie L. Vecchio

USF Tampa Graduate Theses and Dissertations

Data on the movement and diets of fish during a variety of life stages are important inputs to fisheries stock assessments and marine ecosystem models. Stable isotopes may provide previously inaccessible information on movement and diet of a variety of managed and forage fish species. Here I used several novel means of interpretation for stable isotope data to infer diets and movements of several important fisheries species over both short (weeks to months) and long (lifetime) timescales. To calculate a constant partitioning offset (CPO) between the δ¹⁵N of muscle and of liver tissue, I conducted a literature search …

Individual And Population Fitness Consequences Associated With Large Carnivore Use Of Residential Development, Heather Johnson, David L. Lewis, Stewart W. Breck

United States Department of Agriculture Wildlife Services: Staff Publications

Large carnivores are negotiating increasingly developed landscapes, but little is known about how such behavioral plasticity influences their demographic rates and population trends. Some investigators have suggested that the ability of carnivores to behaviorally adapt to human development will enable their persistence, and yet, others have suggested that such landscapes are likely to serve as population sinks or ecological traps. To understand how plasticity in black bear (Ursus americanus) use of residential development influences their population dynamics, we conducted a 6-yr study near Durango, Colorado, USA. Using space-use data on individual bears, we examined the influence of use of residential …

The Effects Of Induced Polycystic Ovary Syndrome In Nag-1 Transgenic Mice, Nicholas Werner

All Master's Theses

Polycystic ovary syndrome (PCOS) is the leading cause of infertility among women in the US and the most common endocrine disorder among women. PCOS is characterized by cystic ovaries, hyperandrogenism (heightened levels of male sex hormones), altered menstrual cycles and various metabolic dysfunctions. The metabolic symptoms associated with PCOS are difficult to treat, as they are a result of hormonal imbalances, rather than diet. The human Non-Steroidal Anti-Inflammatory Drug Activated Gene (NAG-1) been shown to prevent diet-induced metabolic disorders and weight gain in mice. We hypothesized that the expression of NAG-1 may also prevent hormonal-induced metabolic disorders. To test this …

Trees, Fungi, Insects: How Host Plant Genetics Builds A Community, Sandra Jeanne Simon

Graduate Theses, Dissertations, and Problem Reports (ETD)

Organisms, such as fungi and insects, can cause millions of acres of agricultural and forest damage, while others provide billions of dollars in ecological services such as education, aesthetic enjoyment, pollination, and gardening. Plant breeding and biotechnology can potentially help establish a balance between the proliferation of detrimental pests and attraction of beneficial insects. Variation in plant physiological and morphological characteristics are extremely important in the ability of host tissues to support many different types of organisms. When that variation is genetically heritable in a plant population, shifts in the underlying genes can have predictable consequences in structuring entire ecosystems. …

Practicalities Of Re-Wilding, William C. Mcgrew

Animal Sentience

Re-wilding large-brained, intelligent mammals dependent on social learning to acquire survival skills is challenging. Each reintroduced species has different needs, but basic questions relating to essential aspects of successful release such as subsistence remain the same. Here I pose 12 ecologically and ethologically based questions that should be addressed (if not already done).

Staphylococcus Aureus Resistance Patterns In Wisconsin: 2018 Surveillance Of Wisconsin Organisms For Trends In Antimicrobial Resistance And Epidemiology (Swotare) Program Report, Rebecca H. Schulte, Erik Munson

Clinical Lab Sciences Faculty Research and Publications

Objective: Surveillance of antimicrobial resistance patterns on a local level can reveal paradigms not obvious on a regional or national scale. Data collection from this perspective may potentially impact local prescribing patterns and empiric treatment guidelines. The objective of this study was to establish a baseline Staphylococcus aureus antibiogram for the state of Wisconsin and to elucidate potential geographic and demographic factors associated with antimicrobial resistance.

Design: Multi-center laboratory surveillance, with testing at a single site utilizing standardized media and susceptibility testing protocols.

Methods: 309 isolates of clinically-significant S. aureus were collected from hospital microbiology laboratories across Wisconsin in 2018, …

Genetic Overview Of The Maya Populations: Mitochondrial Dna Haplogroups, Angélica González-Oliver, Dircé Pineda-Vázquez, Ernesto Garfias-Morales, Isabel De La Cruz-Laina, Luis Medrano-González, Lourdes Márquez-Morfín, Allan Ortega-Muñoz

Human Biology Open Access Pre-Prints

We identified the mitochondrial DNA haplogroups A, B, C and D in 75 present-day Maya individuals, 24 Maya individuals of the colonial period and one pre-Columbian Maya individual from Quintana Roo, Mexico. We examined these data together with those of 21 Maya populations accounting for 647 present-day Maya individuals and 104 ancient Maya individuals. A demographic study based on the analysis of fertility and endogamy was carried out in two modern Maya populations to identify cultural factors that influence the mitochondrial haplogroup genetic diversity. Most present-day and ancient Maya populations show a distribution pattern of mitochondrial haplogroup frequencies A, C, …

Long-Term Monitoring Of Rare Gypsum Communities In The Eastern Mojave Desert: A Study In Science And Art, Tiffany Jane-Marie Pereira

UNLV Theses, Dissertations, Professional Papers, and Capstones

For land managers, reliable estimates of soil seed banks, and more specifically, change in seed banks over time, provide insight into the restoration and regeneration potential of the landscape, site history and disturbance mapping, and, invasive and rare plant management. To understand the intricacies of desert soil seed banks in relation to aboveground vegetation change, my research evaluated long-term change in soil seed banks, fertile islands, and plant communities of conservation-priority gypsum rare plant habitat of the eastern Mojave Desert. Research found significant spatial and temporal differences in seed bank composition and density over an 11-year period; however, the gypsum …

Amphibian And Reptile Community Responses To Forest And Riparian Disturbance, Jacquelyn Christine Guzy

Graduate Theses and Dissertations

Riparian zones are transitional, semi-terrestrial areas regularly influenced by freshwater. These areas serve as dispersal corridors for many animal and plant species and ultimately function as important reservoirs of biodiversity in altered landscapes. While much of the riparian habitat in the United States has been affected by anthropogenic activities, management actions may mitigate potentially negative influences of these activities. For example, Streamside Management Zones (i.e., riparian buffers; SMZs) are commonly implemented within managed forests to protect water quality, but may also provide habitat for riparian-associated wildlife. Yet, little research has rigorously addressed the value of SMZs for wildlife, particularly cryptic …

Population Identifiability From Forensic Genetic Markers: Ancestry Variation In Latin America, Cris E. Hughes, Bridget F.B. Algee-Hewitt, Lyle Konigsberg

Human Biology Open Access Pre-Prints

The Combined DNA Index System (CODIS) loci are a standard microsatellite marker set widely used for distinguishing among individuals in forensic DNA identity testing for medico-legal casework in the United States and in other countries. In anthropological genetic research, CODIS markers have become an important tool for uses extending beyond case investigations to quantify ancestry proportions, reveals patterns of admixture and trace population histories. These investigations are especially prevalent in studies of Latin American population structure. Nevertheless, the accuracy of the ancestry estimates computed from the CODIS loci for highly admixed Latino populations has not been formally tested. Long-standing arguments …

Consequences Of Intraspecific Variation In Seed Dispersal For Plant Demography, Communities, Evolution And Global Change, Rebecca S. Snell, Noelle G. Beckman, Evan Fricke, Bette A. Loiselle, Carolina S. Carvalho, Landon R. Jones, Nathanael I. Lichti, Nicky Lustenhouwer, Sebastian J. Schreiber, Christopher Strickland, Lauren L. Sullivan, Brittany R. Cavazos, Itamar Giladi, Alan Hastings, Kimberly M. Holbrook, Eelke Jongejans, Oleg Kogan, Flavia Montaño-Centellas, Javiera Rudolph, Haldre S. Rogers, Rafal Zwolak, Eugene W. Schupp

Biology Faculty Publications

As the single opportunity for plants to move, seed dispersal has an important impact on plant fitness, species distributions and patterns of biodiversity. However, models that predict dynamics such as risk of extinction, range shifts and biodiversity loss tend to rely on the mean value of parameters and rarely incorporate realistic dispersal mechanisms. By focusing on the mean population value, variation among individuals or variability caused by complex spatial and temporal dynamics is ignored. This calls for increased efforts to understand individual variation in dispersal and integrate it more explicitly into population and community models involving dispersal. However, the sources, …

Demographic Analyses Of The Data Limited Silky Shark Population In The Indian Ocean Using A Two-Sex Stochastic Matrix Framework, Wen-Pei Tsai, Yen-Jun Wang, Atsuko Yamaguchi

Journal of Marine Science and Technology–Taiwan

The silky shark, Carcharhinus falciformis, is a common bycatch species of tuna and swordfish longline fishing in the Indian Ocean. The high value of its fins makes it one of the most heavily fished shark species in the world. Concern over declining populations and the uncertainty surrounding its population dynamics has increased the urgency of developing appropriate methods to assess its stock status. This study developed a two-sex stage-based structured matrix model with Monte Carlo simulations to examine silky shark demography and population dynamics. The simulations indicate that, without mortality from fishing, the stock will increase slightly (sex combined mean …

Geographic And Socio-Economic Variation In Markers Of Indoor Air Pollution In Nepal: Evidence From Nationally-Representative Data, Saruna Ghimire, Shiva Raj Mishra, Abhishek Sharma, Adugna Siweya, Nipun Shrestha, Bipin Adhikar

School of Public Health Faculty Research

Background In low-income countries such as Nepal, indoor air pollution (IAP), generated by the indoor burning of biomass fuels, is the top-fourth risk factor driving overall morbidity and mortality. We present the first assessment of geographic and socio-economic determinants of the markers of IAP (specifically fuel types, cooking practices, and indoor smoking) in a nationally-representative sample of Nepalese households. Methods Household level data on 11,040 households, obtained from the 2016 Nepal Demographic and Health Survey, were analyzed. Binary logistic regression analyses were conducted to assess the use of fuel types, indoor cooking practices, indoor smoking and IAP with respect to …

Ecological Consequences Of Anomalies In Atmospheric Moisture And Snowpack, Aaron N. Johnston, Jason E. Bruggeman, Aidan T. Beers, Erik A. Beever, Roger G. Christophersen, Jason I. Ransom

Wildland Resources Faculty Publications

Although increased frequency of extreme‐weather events is one of the most secure predictions associated with contemporary climate change, effects of such events on distribution and abundance of climate‐sensitive species remain poorly understood. Montane ecosystems may be especially sensitive to extreme weather because of complex abiotic and biotic interactions that propagate from climate‐driven reductions in snowpack. Snowpack not only protects subnivean biotas from extreme cold, but also influences forage availability through timing of melt‐off and water availability. We related relative abundances of an alpine mammal, the American pika (Ochotona princeps), to measures of weather and snowpack dynamics over an …

Sex‐Biased Survival Contributes To Population Decline In A Long‐Lived Seabird, The Magellanic Penguin, Natasha J. Gownaris, P. D. Boersma

Environmental Studies Faculty Publications

We developed a Hidden Markov mark–recapture model (R package marked) to examine sex‐specific demography in Magellanic Penguins (Spheniscus magellanicus ). Our model was based on 33 yr of resightings at Punta Tombo, Argentina, where we banded ~44,000 chicks from 1983 to 2010. Because we sexed only 57% of individuals over their lifetime, we treated sex as an uncertain state in our model. Our goals were to provide insight into the population dynamics of this declining colony, to inform conservation of this species, and to highlight the importance of considering sex‐specific vital rates in demographic seabird studies. Like many other …

Dispersal As A Buffer Against Zooplankton Community Change In Response To Fluctuating Salinity Levels On The Great Plains, Mercedes Huynh

Theses and Dissertations (Comprehensive)

The North American Great Plains is home to thousands of closed-basin lakes that are sensitive to changes in hydrology. Climate change models predict increased aridity in this region over the coming century, which is expected to lead to higher salinity levels in many freshwater lakes. Increases in salinity levels may impact zooplankton communities, as laboratory experiments show that many freshwater species have a low tolerance for elevated salinity levels, and field data demonstrate that salinity is the primary factor structuring aquatic communities on the Great Plains. Changes to zooplankton communities could lead to a trophic cascade based on their important …

Variation In Prospecting Behavior And Drivers Of Post-Fire Habitat Preference Among Juvenile Florida Scrub-Jays, David Sherer

Electronic Theses and Dissertations

Florida Scrub-Jays (Aphelocoma coerulescens, FLSJ; federally Threatened) are cooperatively breeding birds endemic to Florida and dependent on fire-maintained xeric oak scrub. FLSJs are year-round residents, highly territorial, and rarely disperse far from their natal territory. Lifetime reproductive success is highest among individuals breeding in early-successional habitat, usually less than 9 to 10 years post-fire. However, because scrub burns infrequently such early-successional, high-quality habitat is extremely limited and competition for it as breeding space is likely intense. Because some birds live long enough to experience habitat succession, FLSJs also occupy later-successional overgrown scrub, even though both survival and fecundity decline. Although …

Key Habitat Features Facilitate The Presence Of Barred Owls In Developed Landscapes, Marion A. Clement, Kyle Barrett, Robert F. Baldwin

Publications

As urbanization continues to transform landscapes, it is imperative to find ways to conserve biodiversity within fragmented habitats. Forest interior dwelling birds are particularly vulnerable to development pressures because they require large tracts of forest to support their life cycles. Although Barred Owls (Strix varia) are frequently described as an obligate mature forest species, they have been found in urbanized landscapes. To determine if certain habitat characteristics, such as mature trees, facilitate the presence of Barred Owls in developed regions, we modeled Barred Owl occupancy probability along a development gradient in the Piedmont region of the southeastern United …

Ideating Idna: Lessons And Limitations From Leeches In Legacy Collections, M. E. Siddall, M. Barkdull, M. Tessler, M. R. Brugler, Elizabeth Borda, E. Hekkala

Biology Faculty Publications (Archived)

Indirect methods for conducting faunal inventories present great promise, and genomic inventories derived from environmental sources (eDNA) are improving. Invertebrate ingested DNA (iDNA) from terrestrial leeches in the family Haemadipsidae has shown potential for surveying vertebrates and biodiversity monitoring in protected areas. Here we present an initial, and critical, evaluation of the limitations and biases of current iDNA protocols for biodiversity monitoring using both standard and NGS barcoding approaches. Key findings include the need for taxon relevant multi-locus markers and reference databases. In particular, the limitations of available reference databases have profound potential to mislead and bias eDNA and iDNA …

The Conundrum Of Agenda-Driven Science In Conservation, M. Zachariah Peery, Gavin M. Jones, R. J. Gutierrez, Steve M. Redpath, Alan B. Franklin, Daniel Simberloff, Monica G. Turner, Volker C. Radeloff, Gary C. White

United States Department of Agriculture Wildlife Services: Staff Publications

Conservation biology is a value-laden discipline predicated on conserving biodiversity (Soulé 1985), a mission that does not always sit easily with objective science (Lackey 2007; Pielke 2007; Scott et al. 2007). While some encourage scientists to be responsible advocates for conservation (Garrard et al. 2016), others worry that objectivity in conservation research may suffer (Lackey 2007). At this time, we believe advocacy by scientists is essential for environmental conservation and, indeed, humanity. It is difficult to envision the state of our environment had scientists failed to encourage policy makers and the public to address emerging conservation problems. Nevertheless, conservation scientists …

Imperfect Produce Pricing: Relationships Between Price Percent Discount And Demographic Traits Of Customers, April Foster

Graduate Theses and Dissertations

This research sought to understand the impact of price reductions on consumer spending behaviors related to the purchase of imperfect produce. Additionally, the correlation between consumers’ demographics and their willingness to purchase imperfect produce at various price points was evaluated. The data was viewed with mindfulness toward reducing food loss as a function of the world food crisis. More specifically, the purpose of this study was to describe the relationship between Washington County, Arkansas consumers’ demographic traits and the percent discount at which they are willing to alter their behavior to purchase specific imperfect produce items. Using the Theory of …

Hidden Cost Of Disease In A Free-Ranging Ungulate: Brucellosis Reduces Mid-Winter Pregnancy In Elk, Gavin C. Cotterill, Paul C. Cross, Arthur D. Middleton, Jared D. Rogerson, Brandon M. Scurlock, Johan T. Du Toit

Wildland Resources Faculty Publications

Demonstrating disease impacts on the vital rates of free‐ranging mammalian hosts typically requires intensive, long‐term study. Evidence for chronic pathogens affecting reproduction but not survival is rare, but has the potential for wide‐ranging effects. Accurately quantifying disease‐associated reductions in fecundity is important for advancing theory, generating accurate predictive models, and achieving effective management. We investigated the impacts of brucellosis (Brucella abortus) on elk (Cervus canadensis) productivity using serological data from over 6,000 captures since 1990 in the Greater Yellowstone Ecosystem, USA. Over 1,000 of these records included known age and pregnancy status. Using Bayesian multilevel models, …

Preventing Extinction Of At-Risk Plant Species In A Complex World, Holly Lee Bernardo

Arts & Sciences Graduate Student Theses and Dissertations

Earthճ current biodiversity crisis is now considered a true mass extinction event, with species level extinction rates well above background rates and population level extinction rates orders of magnitude more common that species extinctions. There are many threats driving this loss of biodiversity. How each threat impacts the viability of a species is highly context dependent, but all are anthropogenic in origin and so as the human population continues to increase, so too will the pressure of these threats on our natural systems. Ultimately, how much a threat decreases the viability of a species depends on how that threat influences …