Digital Commons Network^™

A Bayesian Hierarchical Approach For Modeling Virtual Species With Realistic Functional Trait Relationships, Sarah Bogen

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Understanding the spatial and temporal dynamics of plant populations has important implications for the fields of ecology and conservation. A rich body of mathematical modeling approaches, including reaction-diffusion equations and integrodifference equations, have been developed to mechanistically model population spread based on species demography and seed dispersal characteristics. However, with over 390,000 plant species on Earth, it is not feasible to collect complete information on all species for the purpose of drawing generalized conclusions. One means of overcoming such a problem is through trait-based modeling, which seeks to represent realistic combinations of organismal traits rather than focusing on individual species. …

The Role Of Microbiota On Campylobacter Jejuni Colonization And Growth Performance In Broiler Chickens, Ayidh Almansour

Graduate Theses and Dissertations

The successful poultry production at modern era comes from the vertical integratedindustrialization, which has fundamentally changed how animals have been living for millions of years. Antimicrobial growth promoters have been used to sustain the efficient industrialized animal production, driving antimicrobial overuse and resistance. Because of the increasing pressure from consumer’s concerns and government regulations, it is urgent to develop antimicrobial free alternatives as growth promoters in poultry production, but few effective antimicrobial alternatives are currently available. Campylobacter jejuni is one of the worldwide prevalent foodborne bacterial pathogens mainly transmitted from poultry. However, few mechanisms are available on why C. jejuni …

Blanding's Turtles From The Western Sandhills Of Nebraska, Ashley Forrester

Biology Theses, Dissertations, and Student Creative Activity

In all states and provinces in which they reside, Blanding’s Turtles (Emydoidea blandingii) are listed as a species of conservation concern. In other parts of their range, Blanding’s Turtle populations have experienced declines and are threatened by habitat fragmentation and degradation of wetlands. Nebraska is the only state that considers the species to be secure. The largest known population of Blanding’s Turtles was recorded in the Sandhills of Nebraska. The Sandhills represent both the largest sand dune complex in the northern hemisphere and the largest intact temperate grassland ecosystem remaining in the world. These features likely attribute to the success …

Loggerhead Shrike Detectability And Occurrence In Coastal South Carolina Urban Areas, Michelle Krauser

Electronic Theses and Dissertations

Grassland birds, such as the loggerhead shrike (Lanius ludovicianus), are threatened by extensive land-use change, including urbanization. Loggerhead shrikes have been declining since the early 1900s and are rare or extirpated in portions of their former range. Obtaining reliable population estimates of loggerhead shrikes is important to identify demographic trends and ensure conservation decisions are based on an accurate assessment of their current status. Imperfect detection, or the inability to detect every shrike during a survey, can result in biased population estimates. Estimating detection probability is labor-intensive and requires assumptions that are difficult to satisfy in most field studies. Understanding …

Site Fidelity Of Bottlenose Dolphins (Tursiops Truncatus) Using Elemental Analyses And Photo-Identification, Lauren R. Clance

Graduate Theses and Dissertations (2019 - present)

The objective of this study was to determine if bottlenose dolphins (Tursiops truncatus) in Alabama waters acquire location-specific elemental signatures indicative of site fidelity. I measured trace metal concentrations (Chapter II) and stable isotope ratios (Chapter III) in skin from free-ranging dolphins remotely biopsied in Mobile Bay, the northern Gulf of Mexico (Gulf) and eastern Mississippi Sound (EMSS). Elemental findings were corroborated with photo-identification data. I found that dolphins acquired some location-specific elements indicative of site fidelity, with the greatest differences at geographic extremes, particularly relative to salinity. For trace metals, highest concentrations were found in winter, consistent with higher …

Importance Of Local Weather And Environmental Gradients On Demography Of A Broadly Distributed Temperate Frog, Hallie Lingo, James C. Munger

Biology Faculty Publications and Presentations

Amphibian populations are sensitive to environmental temperatures and moisture, which vary with local weather conditions and may reach new norms and extremes as contemporary climate change progresses. Using long-term (11–16 years) mark-recapture data from 10 populations of the Columbia spotted frog (Rana luteiventris) from across its U.S. range, we addressed hypotheses about how demographic relationships to weather depend upon a population’s position along climate gradients. We estimated the effect of seasonal weather on annual survival probability and recruitment rates both within populations and across the species’ range from subalpine forests to semi-arid deserts. We calculated population-specific weather variables …

Mark-Recapture Study And Habitat Assessment For The Northern Metalmark Butterfly, Calephelis Borealis (Lepidoptera: Riodinidae), Weston J. Henry, Kristian S. Omland, Henry Frye, Wagner L. David

EEB Articles

Background: The northern metalmark (Calephelis borealis), is an exceedingly local, globally rare butterfly that is declining across the Midwestern and Northeastern USA. The principal stressors driving colony losses include afforestation and invasive plants that crowd out its larval hostplant (Packera ovata) and nectar resources.

Aims/Methods: To better understand its declines and guide restoration efforts, we 1) performed a mark-recapture study in Connecticut to document population trends where we were actively managing vegetation; 2) conducted a range-wide survey for evidence of phylogeographic structure, using cytochrome oxidase (CO1); 3) investigated abundance determinants of its larval foodplant, Packera ovata …

An Efficient Method Of Evaluating Multiple Concurrent Management Actions On Invasive Populations, Amy J. Davis, Randy Farrar, Brad Jump, Parker Hall, Travis Guerrant, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Evaluating the efficacy of management actions to control invasive species is crucial for maintaining funding and to provide feedback for the continual improvement of management efforts. However, it is often difficult to assess the efficacy of control methods due to limited resources for monitoring. Managers may view effort on monitoring as effort taken away from performing management actions. We developed a method to estimate invasive species abundance, evaluate management effectiveness, and evaluate population growth over time from a combination of removal activities (e.g., trapping, ground shooting) using only data collected during removal efforts (method of removal, date, location, number of …

Body Mass Index (Bmi): A Screening Tool Analysis, Deepesh Khanna, Cadynce Peltzer, Payal Kahar, Mayur S. Parmar

HPD Articles

Body mass index (BMI), a measurement based on a person's height and weight, allows the classification of individuals into categories such as obese or overweight. With these classifications, we can assess risk for hypertension, diabetes, cancer, hypercholesterolemia, and other chronic diseases. Furthermore, childhood BMI serves as a prediction method for health and disease later in life. Along with BMI, researchers also study waist circumference and waist-to-hip ratio in correlation with the above-mentioned chronic illnesses. This brief review explores the associations between body mass index, waist circumference, and the waist-hip ratio as measurements and their capability as predictors for persistent conditions …

Turkey's Largest Cinereous Vulture Population In A Recently Discovered Breeding Area Innorth-West Anatolia, Şafak Arslan, Ci̇hangi̇r Ki̇razli

Turkish Journal of Zoology

Studies regarding the cinereous vulture (Aegypius monachus), classified globally as near threatened, have recently accelerated in Turkey. Comprehensive studies particularly about the northwestern Anatolian population, have been conducted. Also, the genetic studies carried out, have revealed that the cinereous vulture population in Turkey is panmictic and that it has recently suffered a bottleneck. The main aim of this study conducted across the Köroğlu Mountains in Bolu was to determine the population size and the breeding success of the species. A total of 37 field surveys in 2018 and 2019 have revealed Turkey's largest breeding cinereous vulture colony and have detected …

Demographic Modeling Of Conservation Strategies For The Yosemite Toad (Anaxyrus Canorus), Corrina Rebecca Kamoroff

Cal Poly Humboldt theses and projects

The Yosemite toad (Anaxyrus canorus) is an anuran species endemic to the Sierra Nevada in California that, like many amphibians globally, has suffered population declines. The documented decline in A. canorus populations across their historic range highlights the need for an effective management strategy to protect the species from future extirpation. For this study, I estimated survival rates of A. canorus using a Cormack-Jolly-Seber model populated with data from a demographic study. I then used a female-only post-birth pulse stochastic Lefkovitch matrix model using vital rates I estimated and from the literature to simulate the effect of different …

Conserving Endangered Black-Footed Ferrets: Biological Threats, Political Challenges, And Lessons Learned, Travis M. Livieri, Steven C. Forrest, Marc R. Matchett, Stewart Breck

United States Department of Agriculture Wildlife Services: Staff Publications

There may be few stories in the annals of wildlife management that are as dramatic as the near demise and comeback of the black-footed ferret (Mustela nigripes). Endemic only to North America, this charming little carnivore found only in the continent’s central grasslands was hardly known to science until the mid-20th century. By then, vast colonies of the prey it depended on for food and shelter, the prairie dog (Cynomys spp.), had been wiped out through disease (sylvatic plague) and an agricultural industry with little tolerance for burrowing and grazing rodents. At its low point, the species’ …

Seroprevalence Of Toxoplasma Gondii Immunoglobulin G And Immunoglobulin M Antibodies Among Leukemia Patients In Erbil City-Kurdistan Region/Iraq By Enzyme-Linked Immunosorbent Assay Technique, Hemdad H. Mawlood

Polytechnic Journal

The current study was revealed the seroprevalence of Toxoplasma gondii immunoglobulin (Ig)G and IgM among different types of leukemia (Acute lymphocytic leukemia, acute myeloid leukemia, Hodgkin lymphoma [HL], multiple myeloma [MM], non-HL [NHL], and chronic myeloid leukemia) from male and female patients in different age groups (18–≥48 years) using indirect enzyme-linked immunosorbent assay. The results of 140 cases of different types of leukemia showed the highest T. gondii IgG (44.44%) among MM leukemia whereas T. gondii IgM highest (12.5%) among NHL leukemia. Significant (P ≤ 0.01) differences between T. gondii antibodies and age group were recorded, that increased with the …

Is There Room In The United States Diet For Goat Meat? Analysis Of The 2019 National Goat Meat Survey, Everett Marcus Martin

Graduate Theses/Dissertations

Demand for goat meat has steadily increased in the past decade, but few studies have been conducted addressing goat meat attributes and demographic factors on consumers’ willingness to buy goat meat products. Analyzing a national consumer survey on goat meat preference, a logit modeling is used addressing factors affecting willingness to buy three goat meat products: grass-fed, locally grown, and organically raised. Results indicate that quality and freshness attribute characteristics significantly affect consumer willingness to buy grass-fed, organic, and locally grown goat meat.

Youth-To-Senior Transition In Elite European Club Soccer, Thomas Carpels, Nairn Scobie, Niall G. Macfarlane, Ole J. Kemi

International Journal of Exercise Science

International Journal of Exercise Science 14(6): 1192-1203, 2021. The priority for soccer academies is to develop youth players that graduate and transfer directly to their senior squads. The aim of this study was to assess the effectiveness of this direct youth-to-senior pathway by examining the extent to which club-trained players (CTPs) are currently involved in elite male European soccer. Relevant demographic longitudinal studies between 2009 and 2020 conducted by the International Centre for Sports Studies Football Observatory were analysed. The main findings were that the proportion of CTPs in senior squads has decreased from 23% to 17% over this time …

Population Structure Analysis Of The Endangered Oak Quercus Brandegeei, Carolyn Brinckwirth

DePaul Discoveries

As humans continue to impact landscapes and ecosystems throughout the entire world, many plant and animal species have faced major changes in their environments. The rare endemic oak, Quercus brandegeei, is one such endangered species located in the Sierra La Laguna mountains of Baja California Sur, Mexico. This tree occurs solely on the ephemeral riverbeds of the mountains, which are inundated seasonally by hurricane waters. It is important to understand the fundamental characteristics, like spatial distribution, of Q. brandegeei in order to develop restorative management practices to protect this tree against extinction. Determining the geographic distribution of a species …

Range-Wide Declines Of Northern Spotted Owl Populations In The Pacific Northwest: A Meta-Analysis, Alan B. Franklin, Katie M. Dugger, Damon B. Lesmeister, Raymond J. Davis, J. David Wiens, Gary C. White, James D. Nichols, James E. Hines, Charles B. Yackulic, Carl J. Schwarz, Steven H. Ackers, L. Steven Andrews, Larissa L. Bailey, Robin Bown, Jesse Burgher, Kenneth P. Burnham, Peter C. Carlson, Tara Chestnut, Mary M. Conner, Krista E. Dilione, Eric D. Forsman, Elizabeth M. Glenn, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, Julianna M. Jenkins, William L. Kendall, David W. Lamphear, Christopher Mccafferty, Trent L. Mcdonald, Janice A. Reid, Jeremy T. Rockweit, David C. Simon, Stan G. Sovern, James K. Swingle, Heather Wise

United States Department of Agriculture Wildlife Services: Staff Publications

The northern spotted owl (Strix occidentalis caurina) inhabits older coniferous forests in the Pacific Northwest and has been at the center of forest management issues in this region. The immediate threats to this federally listed species include habitat loss and competition with barred owls (Strix varia), which invaded from eastern North America. We conducted a prospective meta-analysis to assess population trends and factors affecting those trends in northern spotted owls using 26 years of survey and capture-recapture data from 11 study areas across the owls' geographic range to analyze demographic traits, rates of population change, and occupancy parameters for spotted …

Microbial Screening Reveals Oral Site-Specific Locations Of The Periodontal Pathogen Selenomonas Noxia, Jaydene Mcdaniel, Steven Mcdaniel, Beanca Jhanine Samiano, Matthew Marrujo, Karl Kingsley, Katherine M. Howard

Dental Medicine Faculty Research

Introduction: Selenomonas noxia (SN) is an important periodontal pathogen, associated with gingivitis and periodontitis. Many studies have found associations between SN and indicators of poor health outcomes, such as smoking, low socioeconomic status and obesity. However, less is known about the prevalence of this organism and more specifically about other oral site-specific locations that may harbor this organism. Methods: Using an existing patient repository (n = 47) of DNA isolated from saliva and other oral sites (n = 235), including the dorsum of the tongue, lower lingual incisor, upper buccal molar and gingival crevicular fluid (GCF), molecular screening for SN …

Longitudinal Study Of Pogonomyrmex Occidentalis (Hymenoptera: Formicideae), Western Harvester Ant, Colony Survival In Western Nebraska, Kathleen H. Keeler

School of Biological Sciences: Faculty Publications

I observed individual western harvester ant (Pogonomyrmex occidentalis) colonies, marked between 1977 and 1994, to live a mean of 15.65 years (n = 112). The longest-lived colony lived 42 years.

Range-Wide Declines Of Northern Spotted Owl Populations In The Pacific Northwest: A Meta-Analysis, Alan B. Franklin, Katie M. Dugger, Damon B. Lesmeister, Raymond J. Davis, J. David Wiens, Gary C. White, James D. Nichols, James E. Hines, Charles B. Yackulic, Carl J. Schwarz, Steven H. Ackers, L. Steven Andrews, Larissa L. Bailey, Robin Bown, Mary M. Conner, Et Al.

Wildland Resources Faculty Publications

The northern spotted owl (Strix occidentalis caurina) inhabits older coniferous forests in the Pacific Northwest and has been at the center of forest management issues in this region. The immediate threats to this federally listed species include habitat loss and competition with barred owls (Strix varia), which invaded from eastern North America. We conducted a prospective meta-analysis to assess population trends and factors affecting those trends in northern spotted owls using 26 years of survey and capture-recapture data from 11 study areas across the owls' geographic range to analyze demographic traits, rates of population change, and …

The Influence Of Resistance Training On Post Surgical Outcomes In Individuals With Anterior Cruciate Ligament Injury, Kevin H. Choe

UNLV Theses, Dissertations, Professional Papers, and Capstones

The anterior cruciate ligament (ACL) is commonly injured, especially in individuals under the age of 25. ACL reconstruction (ACLR) is the most common treatment after ACL injury, followed by physical therapy. However, successful surgery and completion of rehabilitation, individuals still demonstrate quadriceps weakness and asymmetries during locomotion. To improve these deficits, an intervention that improves quadriceps strength and lower extremity biomechanics during locomotion is required. First, we aimed to complete a systematic review of the literature to determine the efficacy of resistance training in improving outcomes after ACLR. Second, we aimed to identify if a history of resistance training positively …

The Age-Dependent Characterization Of The Er-Alpha Positive Breast Cancer Tumor Microenvironment, Katie Marie Hamel

LSU Doctoral Dissertations

In disease states such as cancer, endocrine and paracrine signals from adipose tissue contribute to cancer progression and drug resistance. Young individuals diagnosed with estrogen receptor-alpha positive (ER-a+) breast cancer have an observed increase in resistance to endocrine therapies. This suggests that an alternative estrogen signaling pathway is active within these tumors. Despite this, the effects of stromal age on the endocrine response in breast cancer is not well known. Here, we review and highlight the involvement of the stromal age in both tumorigenesis and physiological wound healing. To identify specific differences between young and aged ER-a+ breast tumors, RNA …

Artificial Nightlight Alters The Predator–Prey Dynamics Of An Apex Carnivore, Jesse R. Barber

Biology Faculty Publications and Presentations

Artificial nightlight is increasingly recognized as an important environmental disturbance that influences the habitats and fitness of numerous species. However, its effects on wide‐ranging vertebrates and their interactions remain unclear. Light pollution has the potential to amplify land‐use change, and as such, answering the question of how this sensory stimulant affects behavior and habitat use of species valued for their ecological roles and economic impacts is critical for conservation and land‐use planning. Here, we combined satellite‐derived estimates of light pollution, with GPS‐data from cougars Puma concolor (n = 56), mule deer Odocoileus hemionus (n = 263) and locations of cougar‐killed …

The Relationships Among Personality Traits, Food Consumption, And Anthropometrics In Healthy People, Chelsea Schwartz

Wayne State University Theses

Two out of three people are obese in the United States, but Western culture isn’t the only population suffering from obesity and comorbidities. Many factors contribute to this global epidemic and more recently various research suggests that personality traits can be used to predict eating behaviors. This study investigated the Big Five personality trait’s influence on food consumption to determine what traits contribute to healthy eating and what traits are susceptible to overeating and therefore, poor health consequences. The Big Five personality traits, anthropometric measures, and diet logs were used to assess 38 individuals for health-related behaviors and obesity-related risk …

Evaluating Potential Effects Of Solar Power Facilities On Wildlife From An Animal Behavior Perspective, Rachel Y. Chock, Barbara Clucas, Elizabeth K. Peterson, Bradley Blackwell, Daniel T. Blumstein, Kathleen Church, Esteban Fernández-Juricic, Gabriel Francescoli, Alison L. Greggor, Paul Kemp, Gabriela M. Pinho, Peter M. Sanzenbacher, Bruce A. Schulte, Pauline Toni

United States Department of Agriculture Wildlife Services: Staff Publications

Solar power is a renewable energy source with great potential to help meet increasing global energy demands and reduce our reliance on fossil fuels. However, research is scarce on how solar facilities affect wildlife. With input from professionals in ecology, conservation, and energy, we conducted a research-prioritization process and identified key questions needed to better understand impacts of solar facilities on wildlife. We focused on animal behavior, which can be used to identify population responses before mortality or other fitness consequences are documented. Behavioral studies can also offer approaches to understand the mechanisms leading to negative interactions (e.g., collision, singeing, …

George Argus’S List Of Salix References, Yulia Kuzovkina-Eischen

Plant Science Articles

This bibliographical list, containing more than 3600 publications related to the genus Salix, was compiled by Dr. Argus during his long scientific career.

Habitat, Diet, And Foraging Ecology Of Willow Flycatcher In Sierra Nevada Meadows, Scott E. Dietrich

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The last stronghold of the California Willow Flycatcher (Empidonax traillii) population, which exists in the Sierra Nevada, continues to decline, necessitating a clearer understanding of how meadows provide habitat for the species. To gain this understanding, we assessed vegetation type, saturation levels, and invertebrate species at 51 different sites within four meadows located in the Little Truckee River drainage. 17 of these sites were occupied by nesting Willow Flycatcher during the time of the study, 17 sites had been occupied by nesting Willow Flycatcher in annual surveys between 1997 and 2010 but are no longer used, and 17 …

Hyperspectral Properties Of Date Palm Trees (Phoenix Dactylifera L.), Mohamed Ali Saeed Ahmed Al Abdouli

Theses

The goal of this study is to classify the Date Palm varieties based on hyperspectral signature technology since it is difficult to identify the Date Palm cultivars without fruits. It will also help to obtain the hyperspectral signature for different types of date palm trees. Moreover, it also assists to determine the wavelength fingerprint of each cultivar and to recommend the best classification protocol differentiating among different cultivars based on spectral signature. Utilizing the Hyperspectral imaging technology precisely on the leaves of different Date Palm cultivars, thus facilitating identification of date palm cultivars without the fruits and make the spatial …

Artificial Nightlight Alters The Predator–Prey Dynamics Of An Apex Carnivore, Mark A. Ditmer, David C. Stoner, Clinton D. Francis, Jesse R. Barber, James D. Forster, David M. Choate, Kirsten E. Ironside, Kathleen M. Longshore, Kent R. Hersey, Randy T. Larsen, Brock R. Mcmillan, Daniel D. Olson, Alyson M. Andreasen, Jon P. Beckmann, P. Brandon Holton, Terry A. Messmer, Neil H. Carter

Life Sciences Faculty Research

Artificial nightlight is increasingly recognized as an important environmental disturbance that influences the habitats and fitness of numerous species. However, its effects on wide‐ranging vertebrates and their interactions remain unclear. Light pollution has the potential to amplify land‐use change, and as such, answering the question of how this sensory stimulant affects behavior and habitat use of species valued for their ecological roles and economic impacts is critical for conservation and land‐use planning. Here, we combined satellite‐derived estimates of light pollution, with GPS‐data from cougars Puma concolor (n = 56), mule deer Odocoileus hemionus (n = 263) and locations of cougar‐killed …

Long‐Distance Natal Dispersal Is Relatively Frequent And Correlated With Environmental Factors In A Widespread Raptor, Hanna M. Mccaslin, T. Trevor Caughlin, Julie A. Heath

Biology Faculty Publications and Presentations

1. Dispersal is a critical process influencing population dynamics and responses to global change. Long‐distance dispersal (LDD) can be especially important for gene flow and adaptability, although little is known about the factors influencing LDD because studying large‐scale movements is challenging and LDD tends to be observed less frequently than shorter‐distance dispersal (SDD).
2. We sought to understand patterns of natal dispersal at a large scale, specifically aiming to understand the relative frequency of LDD compared to SDD and correlates of dispersal distances.
3. We used bird banding and encounter data for American kestrels (Falco sparverius) to investigate the effects of …