Digital Commons Network^™

Looking At Zoos, Irus Braverman

Journal Articles

Looking at zoos from the perspective of zoo personnel, this article explores the importance of vision in the zoo’s presentation of its animals as well as the major technologies that the zoo uses to intensify such animal visions. On the one end of the spectrum, zoogeography and immersion design are used at the zoo exhibit to enable zoogoers to see animals in their naturalistic settings. On the opposite end of the spectrum, animals are caged and cared for in the highly artificial settings of the zoo’s holding area, with little or no exposure to the public gaze. In between these …

The Branched Actin Nucleator Arp2/3 Promotes Nuclear Migrations And Cell Polarity In The C. Elegans Zygote, William A. Mohler

UCHC Articles - Research

Regulated movements of the nucleus are essential during zygote formation, cell migrations, and differentiation of neurons. The nucleus moves along microtubules (MTs) and is repositioned on F-actin at the cellular cortex. Two families of nuclear envelope proteins, SUN and KASH, link the nucleus to the actin and MT cytoskeletons during nuclear movements. However, the role of actin nucleators in nuclear migration and positioning is poorly understood. We show that the branched actin nucleator, Arp2/3, affects nuclear movements throughout embryonic and larval development in C. elegans, including nuclear migrations in epidermal cells and neuronal precursors. In one-cell embryos the migration …

Iron Limitation Of A Springtime Bacterial And Phytoplankton Community In The Ross Sea: Implications For Vitamin B12 Nutrition, Erin M. Bertrand, Mak A. Saito, Peter A. Lee, Robert B. Dunbar, Peter N. Sedwick, Giacomo R. Ditullio

OES Faculty Publications

The Ross Sea is home to some of the largest phytoplankton blooms in the Southern Ocean. Primary production in this system has previously been shown to be iron limited in the summer and periodically iron and vitamin B-12 colimited. In this study, we examined trace metal limitation of biological activity in the Ross Sea in the austral spring and considered possible implications for vitamin B-12 nutrition. Bottle incubation experiments demonstrated that iron limited phytoplankton growth in the austral spring while B-12, cobalt, and zinc did not. This is the first demonstration of iron limitation in a Phaeocystis antarctica-dominated, early …

Exercise-Induced Lymphocyte Apoptosis And Relationship With Level Of Lactate In Smokers And Non-Smokers, Kyung-Shin Park, Yang Lee

International Journal of Exercise Science

Purposes of this study were 1) to examine the exercise intensity where lymphocyte apoptosis index (AI) is significantly increased in smokers and non-smokers, 2) to find out whether AI is associated with level of lactate (L). METHODS: Fourteen healthy untrained smokers (≥ 1 pack year, n=7) and non-smokers (n=7) aged 18 to 26 were recruited. Each subject conducted three treadmill runs at different intensities randomly. Running distance for all three runs was equivalent to 30 minute run at 70% VO2max. AI and L were analyzed at rest (Pre), immediately after (Post), and 1 h following (1 h post) each run. …

Viral Selex Reveals Individual And Cooperative Roles Of The C-Box And G-Box In Hiv-2 Replication, Christy L. Strong, Jean-Marc Lanchy, J. Stephen Lodmell

Biological Sciences Faculty Publications

The 5' UTR of HIV-2 genomic RNA contains signaling motifs that regulate specific steps of the replication cycle. Two motifs of interest are the C-box and the G-box. The C-box is found in the 5' untranslated region upstream of the primer binding site, while the G-box is found downstream from the major splice donor site, encompassing the gag start codon and flanking nucleotides. Together the C-box and the G-box form a long-range base-pairing interaction called the CGI. We and others have previously shown that formation of the CGI affects RNA dimerization in vitro and the positions of the C-box and …

Environmental And Taxonomic Bacterial Diversity Of Anaerobic Uranium(Iv) Bio-Oxidation, Karrie A. Weber, J. Cameron Thrash, J. Ian Van Trump, Laurie A. Achenbach, John D. Coates

School of Biological Sciences: Faculty Publications

Microorganisms in diverse terrestrial surface and subsurface environments can anaerobically catalyze the oxidative dissolution of uraninite. While a limited quantity (~5 to 12 μmol liter^-1) of uranium is oxidatively dissolved in pure culture studies, the metabolism is coupled to electron transport, providing the potential of uraninite to support indigenous microbial populations and to solubilize uranium.

Supplementary files (zip folder) attached (below).

Contribution Of Dietary Supplements To The Nutritional Status Of College Students, Caroline Yu

Honors Scholar Theses

Little is known about the prevalence of dietary supplement usage among college students. Though taking dietary supplements can cover nutrient shortages not achieved through diet alone, it is often recommended to improve the quality of one's diet rather than rely on supplements. The main objective of this research study was to determine the prevalence of dietary supplement use among college students in relation to a variety of demographic and lifestyle variables, and to find out what portion of total nutrient intake is supplied by supplements. Subjects were all recruited from the University of Connecticut, and each participant completed a health …

The Role Of Il-6 In Adenosine-Mediated Pulmonary Fibrosis, Mesias Pedroza

Dissertations and Theses (Open Access)

Adenosine is a purinergic signaling molecule that regulates various aspects of inflammation and has been implicated in the pathogenesis of chronic lung diseases. Previous studies have demonstrated that adenosine up-regulates IL-6 production through the engagement of the A_2B adenosine receptor in various cell types, including alveolar macrophages. IL-6 is elevated in mouse models and humans with chronic lung disease, suggesting a potential role in disease progression. Furthermore, chronic elevation of adenosine in the lungs of adenosine deaminase deficient (Ada^-/-) mice leads to the development of pulmonary inflammation, alveolar destruction, and fibrosis, in conjunction with IL-6 elevation. …

Expression And Regulation Of Human Cytochrome P450 4f Isoforms In Tissue Samples And Under Tnf-Alpha Challenges, Jordan C. Bell

Dissertations and Theses (Open Access)

CYP4F (Cytochrome P4504F) enzymes metabolize endogenous molecules including leukotrienes, prostaglandins and arachidonic acid. The involvement of these endogenous compounds in inflammation has led to the hypothesis that changes in the inflamed tissue environment may affect the expression of CYP4Fs during the pro-inflammatory state, which in turn may modulate inflammatory conditions during the anti-inflammatory state. We demonstrated that inflamed tissues have different levels of CYP4F isoform expression profiles in a number of human samples when compared to the average population. The CYP4F isoform expression levels change with the degree of inflammation present in tissue. Further investigation in cell culture studies revealed …

Exploring The Functional Interaction Between Camk-Ii And P53, Raymond Lai

Theses and Dissertations

Calcium (Ca2+)/calmodulin-dependent kinase 2 (CaMK-II) is a multifunctional member of a family of Ca2+/calmodulin-dependent serine/threonine protein kinases that respond to transient intracellular calcium signaling. CaMK-II has been reported to be involved with transcription regulation, cell motility, neuronal development, cell cycle regulation, and more recently early development of vertebrates (Easley et al., 2008; Rothschild et al., 2009; Francescatto et al., 2010). Through previous work in the lab using tandem mass spectrometry and “substrate-trapping mutants”, tumor suppressor protein 53 (p53) was identified as a novel CaMK-II binding partner in tissue culture. In this study, I sought to provide characterization of the functional …

2011 - The Sixteenth Annual Symposium Of Student Scholars

Symposium of Student Scholars Program Books

The full program book from the Sixteenth Annual Symposium of Student Scholars, held on April 26, 2011. Includes abstracts from the presentations and posters.

Bryant University Research And Engagement Day Program

Bryant REDay (Research and Engagement Day)

No abstract provided.

Aging Is Associated With Positive Responding To Neutral Information But Reduced Recovery From Negative Information, Carien M. Van Reekum, Stacey M. Schaefer, Regina C. Lapate, Catherine J. Norris, Lawrence L. Greischar, Richard J. Davidson

Dartmouth Scholarship

Studies on aging and emotion suggest an increase in reported positive affect, a processing bias of positive over negative information, as well as increasingly adaptive regulation in response to negative events with advancing age. These findings imply that older individuals evaluate information differently, resulting in lowered reactivity to, and/or faster recovery from, negative information, while maintaining more positive responding to positive information. We examined this hypothesis in an ongoing study on Midlife in the US (MIDUS II) where emotional reactivity and recovery were assessed in a large number of respondents (N = 159) from a wide age range (36–84 …

Ph-Dependent 15-Lipoxygenase Catalyzed Peroxidation Of Linoleic Acid: Hplc/Esr/Ms Study, Shuting Zhong, Yan Gu, Preeti Purwaha, Benidict Law, Faculty Advisor, Steven Y. Qian, Faculty Advisor

John Wesley Powell Student Research Conference

No abstract provided.

Nomadic Knowledge Of The Yak: A Case Study In The Khangai Mountains, Mongolia, Jesse Geary

Independent Study Project (ISP) Collection

It is extremely important to probe and preserve the knowledge of nomadic herders of Mongolia. There is no formal piece of literature that dictates how these clever humans survive. Their lifestyle requires a vast skill set spanning from construction knowledge, to navigational skills, to a deep understanding of their animals. One attains this knowledge through years of observation, listening, and attempting to mimic their parents. In this way, knowledge is passed on from one generation to the next. Investigating herder’s knowledge of the yak provides a window into the animal husbandry practices of Mongolian nomads. The herders in the central …

The Update, April/May 2011, University Of Northern Iowa. College Of Humanities, Arts And Sciences.

Update

Inside this issue:

-- UNI's Concert Chorale Makes it to Manhattan
-- Department News
-- Center for Holocaust and Genocide Education
-- The Philosophy Students Club
-- Urinetown: The Musical
-- ADAI Awards
-- School of Music Events
-- Student Spotlight: Earth Science: Kerri Dickey
-- Student Spotlight: Health Promotion: Yaw Kyeremateng
-- 2011 Yager Exemplary Science and Mathematics Teaching Award
-- Textbook Buyback Battle
-- Goldwater Scholarship Honorable Mention
-- Regional Physics Olympics Competition Held at UNI
-- Fulbright Recipient Explores Culture
-- Botanical Center Plant Sale
-- 2011 University Book and Supply Outstanding Teaching Award
-- In Memory …

Low Levels Of Hydrogen Peroxide Stimulate Corneal Epithelial Cell Adhesion, Migration, And Wound Healing, Qing Pan, Wen-Ya Qiu, Ya-Nan Huo, Yu-Feng Yao, Marjorie F. Lou

School of Veterinary and Biomedical Sciences: Faculty Publications

PURPOSE. Intracellular reactive oxygen species have been reported to associate with growth factor and integrin signalings in promoting cell adhesion in many cell types. This study is to explore if exogenous H2O2 at low levels can be beneficial to cell adhesion, migration, and wound healing.

METHODS. Primary rabbit corneal epithelial cells treated with 0–70 M H2O2 were tested for viability by MTT assay, adhesion by centrifugation assay, focal contacts of vinculin and F-actin by immunofluorescence, activated Src(pY416), EGF receptor (pY845), vinculin(pY1065), FAK(pY397), and FAK(pY576) by immunoblotting. Cell migration was examined with 0–50 M H2O2 using the scratch wound technique. Corneal …

Effect Of Brown Midrib Corn Silage And Dried Distillers Grains Plus Solubles On Lactational Performance And Nitrogen Utilization By Dairy Cows, Hugo A. Ramirez

Department of Animal Science: Dissertations, Theses, and Student Research

Thirty six Holstein cows, four ruminally cannulated, (mean ± SD, 111 ± 35 DIM; 664 ± 76.5 kg BW) were used in replicated 4×4 Latin squares to investigate the effects of brown midrib (bm3) and conventional (DP) corn silages, and the inclusion of dried distillers grains plus solubles (DDGS) on milk production and N utilization. In each 28 d period cows were assigned to one of four treatments: DP plus 0% DDGS (CON); bm3 plus 0% DDGS (BMR); DP corn silage plus 30% DDGS (DP+DG); and bm3 plus 30% DDGS (BMR+DG). Dry matter intake was greater (P < 0.01) for cows consuming bm3 (25.8 VS 24.4 ± 0.47 kg), likewise for DDGS (24.3 and 25.9 ± 0.47 kg/d for 0 and 30%). Compared to DP hybrid, NDFD was higher (P < 0.01) for bm3 (32.5 VS 38.1 ± 1.79%). There was a hybrid × DDGS interaction (P < 0.01) for total concentration of volatile fatty acids (VFA) and rumen pH as the highly digestible treatment BMR+DG resulted in the highest VFA and the lowest pH. Milk yield was not affected by treatment and averaged 30.6 ± 1.09 kg/d. Milk protein yield (MPY) was greater (P < 0.01) for bm3 and DDGS treatments. There was a hybrid by DDGS interaction (P = 0.02) for milk fat yield (MFY) resulting in 1.03, 1.08, 0.84 and 0.78 ± 0.045 kg/d for DP, BMR, DP+DG and BMR+DG. Fat corrected milk (FCM) was affected by DDGS (P < 0.01) and averaged 30.0 and 26.4 ± 1.0kg/d (0% and 30% inclusions). Urinary N excretion was similar among treatments; however fecal N was lower (P = 0.03) for diets containing bm3 corn silage which caused lower (P = 0.02) manure N. These results indicate that bm3 corn silage and DDGS increase DMI, NDFD and MPY; however high inclusion of corn silage with 30% DDGS reduces FCM. Nitrogen excretion was reduced when cows consumed bm3.

An Ethnobotanical Survey Of The Economic And Cultural Significance Of Non-Timber Forest Products In The Southwest Rhodope Mountain Region Of Bulgaria, Callie A. Bertsch

Dissertations, Master's Theses and Master's Reports - Open

The people of the southwestern Rhodope Mountains of Bulgaria live in small, mountainous villages and rural areas. They rely on berries, herbs, and mushrooms provided by the forest and maintain a lifestyle and culture of gathering them. This study determined the economic and landscape concentration of Non-Timber Forest Products (NTFPs) and how this has changed in the past twenty years in the region of Garmen. The objective was to gauge the cultural and economic significance of NTFPs in the lives of the people who live there. Data was collected using informal, open-ended interviews and through participant observation. Results indicate that …

Contextual Ontology Alignment Of Lod With An Upper Ontology: A Case Study With Proton, Prateek Jain, Peter Z. Yeh, Kunal Verma, Reymonrod G. Vasquez, Mariana Darnorva, Pascal Hitzler, Amit P. Sheth

Kno.e.sis Publications

The Linked Open Data (LOD) is a major milestone towards realizing the Semantic Web vision, and can enable applications such as robust Question Answering (QA) systems that can answer queries requiring multiple, disparate information sources. However, realizing these applications requires relationships at both the schema and instance level, but currently the LOD only provides relationships for the latter. To address this limitation, we present a solution for automatically finding schema-level links between two LOD ontologies – in the sense of ontology alignment. Our solution, called BLOOMS+, extends our previous solution (i.e. BLOOMS) in two significant ways. BLOOMS+ 1) uses a …

Risk Maps For Targeting Exotic Plant Pest Detection Programs In The United States, R Magarey, D Borchert, J S. Engle, M Colunga-Garcia Michigan State University, F Koch, D Yemshanov Canadian Forest Service, Great Lakes Forestry Centre

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

In the United States, pest risk maps are used by the Cooperative Agricultural Pest Survey for spatial and temporal targeting of exotic plant pest detection programs. Methods are described to create standardized host distribution, climate and pathway risk maps for the top nationally ranked exotic pest targets. Two examples are provided to illustrate the risk mapping process: late wilt of corn (Harpophora-maydis) and the giant African land snail (Achatina fulica). Host risk maps were made from county-level crop census and USDA Forest Inventory and Analysis data, respectively. Climate risk maps were made using the North Carolina …

Mechanisms Of Alpha]-Synuclein-Induced Neurodegenertaion In Parkinson's Disease And Stroke, Cherine Belal

Electronic Theses and Dissertations

Parkinson’s disease (PD) is a debilitating neurodegenerative disorder affecting one million Americans. Despite its social and economic impact, the pathological cascades that lead to neuron dysfunction and degeneration in PD are poorly understood. Endoplasmic reticulum (ER) stress has been implicated as an initiator or contributing factor in neurodegenerative diseases including PD. The ER is an organelle central to protein folding and intracellular Ca2+ homeostasis. Perturbations of these functions result in ER stress and upregulation of ER stress proteins, of which some have been implicated in counteracting ER stress-induced cell death. The mechanisms that lead to ER stress and how ER …

Defining Gene Expression In Normal Human Epidermal Keratinocytes And Melanocytes: A Prerequisite For Understanding Hyperplastic And Neoplastic Pathology, Erika De Wyllie Billick

Student Theses and Dissertations

To define pathologic alterations, a reference of "normal" cells is needed in order to interpret genomic methods that study gene expression of melanocytes and keratinocytes in growth-activated or neoplastic skin diseases. Historically, mRNAs isolated from cultured epidermal keratinocytes or melanocytes are used to define normal gene expression patterns. In this study, we profiled global gene expression in human epidermal keratinocytes on Affymetrix U133 plus 2.0 arrays from three different "normal" sources: 1) cultured keratinocytes, 2) FACS keratinocytes from dispase-separated epidermis, and 3) laser-capture microdissected (LCM) epidermis. For melanocytes, the precursor cell of melanoma, the attempt was made to isolate a …

Enzymatic Defects Underlying Hereditary Glutamate Cysteine Ligase Deficiency Are Mitigated By Association Of The Catalytic And Regulatory Subunits, Melanie Neely Willis, Yilin Liu, Ekaterina I. Biterova, Melanie A. Simpson, Heejeong Kim, Jaekwon Lee, Joseph J. Barycki

Department of Biochemistry: Faculty Publications

Glutamate cysteine ligase (GCL) deficiency is a rare autosomal recessive trait that compromises

production of glutathione, a critical redox buffer and enzymatic cofactor. Patients have markedly

reduced levels of erythrocyte glutathione, leading to hemolytic anemia and in some cases,

impaired neurological function. Human glutamate cysteine ligase is a heterodimer comprised of a

catalytic (GCLC) and a regulatory subunit (GCLM), which catalyzes the initial rate limiting step

in glutathione production. Four clinical missense mutations have been identified within GCLC:

Arg127Cys, Pro158Leu, His370Leu, and Pro414Leu. Here, we have evaluated the impacts of

these mutations on enzymatic function in vivo and in vitro …

Characterization Of The Expression Of Bdnf And Cgrp And Their Regulatory Pathways In Dorsal Root Ganglion During Cystitis., Sharon Yu

Theses and Dissertations

Interstitial cystitis is a chronic debilitating disease that causes pain and increased frequency of micturition, amongst other symptoms, without any identifiable cause. This disease affects a large number of the population, yet the etiology is still unknown. The present study aimed to characterize BDNF and CGRP—two neuropeptides that have both been proven to play an important role in the transmission of pain as well as in hypersensitivity. The signaling pathways regulating the expression of the two neuropeptides were also examined. Results revealed that BDNF protein expression levels increased in both L1 and L6 DRG following 48 hours post CYP-induced cystitis. …

Roles Of The 15-Kda Selenoprotein (Sep15) In Redox Homeostasis And Cataract Development Revealed By The Analysis Of Sep 15 Knockout Mice, Marina V. Kasaikina, Dmitri E. Fomenko, Vyacheslav M. Labunskyy, Salil A. Lachke, Wenya Qiu, Juliet A. Moncaster, Jie Zhang, Mark W. Wojnarowicz, Sathish Kumar Natarajan, Mikalai I. Malinouski, Ulrich Schweizer, Petra A. Tsuji, Bradley A. Carlson, Richard L. Maas, Marjorie F. Lou, Lee E. Goldstein, Dolph L. Hatfield, Vadim N. Gladyshev

School of Veterinary and Biomedical Sciences: Faculty Publications

The 15-kDa selenoprotein (Sep15) is a thioredoxin-like, endoplasmic reticulum-resident protein involved in the quality control of glycoprotein folding through its interaction with UDP-glucose:glycoprotein glucosyltransferase. Expression of Sep15 is regulated by dietary selenium and the unfolded protein response, but its specific function is not known. In this study, we developed and characterized Sep15 KO mice by targeted removal of exon 2 of the Sep15 gene coding for the cysteinerich UDP-glucose:glycoprotein glucosyltransferase-binding domain. These KO mice synthesized a mutant mRNA, but the shortened protein product could be detected neither in tissues nor in Sep15 KO embryonic fibroblasts. Sep15 KO mice were viable …

Another Really, Really Big Virus, James L. Van Etten

Department of Plant Pathology: Faculty Publications

Viruses with genomes larger than 300 kb and up to 1.2 Mb, which encode hundreds of proteins, are being discovered and characterized with increasing frequency. Most, but not all, of these large viruses (often referred to as giruses) infect protists that live in aqueous environments. Bioinformatic analyses of metagenomes of aqueous samples indicate that large DNA viruses are quite common in nature and await discovery. One issue that is perhaps not appreciated by the virology community is that large viruses, even those classified in the same family, can differ significantly in morphology, lifestyle, and gene complement. This brief commentary, which …

Cultural Botany: Toward A Model Of Transdisciplinary, Embodied, And Poetic Research Into Plants, John C. Ryan

Research outputs 2011

Since the eighteenth century, the study of plants has reflected an increasingly mechanized and technological view of the natural world that divides the humanities and the natual sciences. In broad terms, this article proposes a context for research into flora through an interrogation of existing literature addressing a rapprochement between ways to knowledge. The natureculture dichotomy, and more specifically the plant-to-human sensory disjunction, follows a parallel course of resolution to the schism between objective (technical, scientific, reductionistic, visual) and subjective (emotive, artistic, relational, multi-sensory) forms of knowledge. The foundations of taxonomic botany, as well as the allied fields of environmental …

Plants, Processes, Places: Sensory Intimacy And Poetic Enquiry, John Ryan

Research outputs 2011

As an arts-based research approach, poetic enquiry has been theorised and applied recently in the social sciences and in education. In this article, I extend its usage to eco-critical studies of Australian flora and fauna. The Southwest corner of Western Australia affords opportunities to deploy arts-based methodologies, including field poetry, for celebrating the natural heritage of a region of distinguished biodiversity. I suggest that lyric practices in places such as Lesueur National Park and Anstey-Keane Damplands in southern Perth can catalyse embodied engagements with flora. The outcome of these practices is the invocation of the multiple senses— including the proximities …

47 | The Ramat Bet Shemesh Regional Project: Landscapes Of Settlement From The Paleolithic To The Ottoman Periods, Yehuda Dagan

IAA Reports—Monograph Series of the Israel Antiquities Authority

The Ramat Bet Shemesh Project was a high-resolution regional study of an area in the Judean Shephelah designated for urban developments, which aimed at recording the ancient remains as well as the natural environment that were to be completely destroyed. The first volume, the Gazetteer (IAA Reports 46), described all the sites surveyed during the project, as well as the results of 100 small-scale excavations. This second volume presents the methodology and field techniques of the project, the ecological and environmental studies, the use of GIS technology, and discussions of the settlement patterns and agricultural activity of each period, as …