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An Aquatic Treadmill Alters Lower Limb Walking Dynamics In Typically Developing Children And Children With Cerebral Palsy, Oluwaseye P. Odanye, Joseph Harrington, Aaron Likens, David Kingston, Brian Knarr

Journal Articles

This block-randomized crossover study investigated how a speed-modulated aquatic treadmill (AT) impacts the walking biomechanics of pediatric gait. Eight cerebral palsy (CP) and fifteen typically developing (TD) children walked at normal, slow, and fast treadmill speeds in AT and dry treadmill (DT) conditions. The joint angles of participants were calculated from inertial measurement units to derive sample entropy (SE) measures that quantified the regularity or complexity of motion. A hierarchical statistical model revealed that the CP group had lower SE values for the hip, knee, and ankle joints in the AT and at slower than faster treadmill speeds. Only the …

Network Analysis Of Antimicrobial Resistance In Staphylococcus Aureus: Characterization Of Hub Genes And Their Functional Implications, Md Imran Hasan, Davida Smyth, Jeong Yang, Ashley Teufel

Masters Theses (Archived)

Antimicrobial resistance is a major cause of morbidity and mortality in patients with S. aureus infections. In this study, we analyzed genes, molecular mechanisms, and pathways driving drug resistance in S. aureus using network analysis. Using whole-genome sequencing (WGS) data and systems biology approaches, we identified 229 AMR-associated genes and constructed a protein-protein interaction network among these genes. Through network topology and functional enrichment analyses, we not only confirmed their association with resistance, but also highlighted the central roles of these genes in resistance pathways, such as efflux, target replacement, and target protection, which are directly linked to multiple drug …

Discrimination Of Sprat Species (Clupeonella Spp.) In The Caspian Sea And The Sea Of Marmara Using Otolith Shape Analysis, Mohammad Reza Shariati, Mohammad Sadegh Alavi-Yeganeh, Mehdi Ghanbarifardi, Gülşah Saç, Müfi̇t Özuluğ, Erdoğan Çi̇çek

Turkish Journal of Zoology

This study evaluates the discriminating power of sagittal otolith shape among three species of the genus Clupeonella endemic to the Caspian Sea (Clupeonella grimmi, Clupeonella caspia, and Clupeonella engrauliformis) and one species from the Sea of Marmara (Clupeonella Cultriventris). Identification of these species is challenging due to their morphological similarities, and the taxonomic validity of C. caspia and C. cultriventris remains ambiguous because of their resemblance. Scanning electron microscope (SEM) images were utilized to examine the morphological characteristics of otoliths. Stereomicroscope images were used to calculate six shape indices: rectangularity, roundness, ellipticity, circularity, aspect ratio, and form factor. The outline …

Protein Composition Of The Foam Nest Of Rhacophorus Reinwardtii (Schlegel, 1840) (Anura: Rhacophoridae), With Notes On Breeding Sites Characteristics And Biomedical Applications, Muhammad Asyraf Rijalullah, Nia Kurniawan, Nia Kurnianingsih

Turkish Journal of Zoology

Rhacophorus reinwardtii is endemic to Java Island and is currently experiencing a population decline. Therefore, the sustainability of its offspring is important to prevent species extinction. Foam nest as a biosurfactant structure plays a crucial role as egg protection through major protein components function. However, studies on the functional proteins of rhacophoridae foam nests are limited. Thus, this study aims to uncover the protein-specific components and functions of the R. reinwardtii foam nest. Additionally, the characteristics of breeding sites, including abiotic factors, were also assessed. Total protein concentration of the R. reinwardtii foam nest was determined to be 747.7 μg/mL …

Thermal Physiology Of The Giant Day Gecko, Phelsuma Grandis, Infinity Alvarez

Masters Theses (Archived)

Ectotherms rely on their environment to regulate and maintain their body temperature. For this reason, environmental fluctuations strongly impact their biology. Lizards are ectotherms that are suitable models to investigate thermal physiology. However, the bulk of this research has been studied using new world Anolis lizards. In this study, the giant day gecko, (P.grandis), native to Madagascar but invasive in Florida, was selected as a model for comparison. In our physiotype of P.grandis we included measurements such as metabolic rates, sprint speed at relevant temperatures, thermal preference, critical thermal minimum, and voluntary thermal maximum. Our findings showed that …

Honey Bee & Reward Loss: A Deep Dive Into The Alarm Pheromone, Citlalli Guadarrama

Masters Theses (Archived)

No abstract provided.

Engineering Hiv-1 Env Protein To Elucidate In Situ Structural Dynamics Of Env, Narendra Kumar Gonepudi

Biotechnology Theses

The HIV-1 Envelope (Env) glycoprotein trimers undergo structural changes upon interacting with host receptor CD4 and coreceptors (CCR5/CXCR4) for virus entry. As the only surface-exposed viral protein, Env is a key antibody target but evades recognition through structural changes. Studying Env dynamics with respect to the coreceptor binding region (V3 loop) provides insights into virus entry and immune evasion. Fluorescence labeling via genetic code expansion (amber–TAG suppression) offers a minimally invasive approach for fluorescence microscope-based Env dynamics studies. Here, two V3-related dual-amber Env constructs (A135_TAG-P308_TAG, P308_TAG-E395_TAG) were generated by incorporating two non-canonical …

Myocardin Effector Proteins Affect Tgf-Beta-Induced Myofibroblast Differentiation In Ipf Cells, Allison Gonzalez

Biotechnology Theses

Idiopathic pulmonary fibrosis (IPF) is an incurable interstitial lung disease defined by the progressive, irreversible scarring of the tissues between the lung’s alveoli. To date, only two drugs have received approval for treatment. However, these medications are not considered cures since they do not stop the progression of the disease. A deeper understanding of the mechanisms underlying IPF could aid in discovering a cure. We recently found that myocardin (MyoCD) regulates SMAD2/3 transcription factors in the TGF-β signaling pathway and governs the genes involved in pleural fibrosis. However, it is unclear whether MyoCD plays a critical role in IPF by …

Application Of Bioinformatic Tools To Tuberculosis Surveillance At The Arkansas Department Of Health, Brian Scott Delavan

Theses and Dissertations

Tuberculosis (TB) remains a public health threat in Arkansas. Great strides have been made over the past fifty years to reduce the number of TB cases in Arkansas. However, the rate of TB cases has remained steady since 2010. According to the Arkansas Department of Health, from 2012 through 2023 the TB Case rate per 100,00 population was between 2.0 and 3.1. To continue Arkansas’ drive towards elimination of TB in Arkansas, defined as one TB case per million residents, new data analysis tools are needed. This project employs multiple bioinformatic tools to analyze TB cases and latent tuberculosis infections …

Causes Of Heterozygosity Excess: The Case Of Mexican Populations Of Populus Tremuloides, Javier Hernández-Velasco, José Ciro Hernández-Díaz, Sergio Leonel Simental-Rodríguez, Juan P. Jaramillo-Correa, David S. Gernandt, José Jesús Vargas-Hernández, Ilga Porth, Roos Goessen, M. Socorro Gonzáles-Elizondo, Matthias Fladung, Cuauhtémoc Sáenz-Romero, José Guadalupe Martínez-Ávalos, Artemio Carrillo-Parra, Eduardo Mendoza-Maya, Arnulfo Blanco-García, Christian Wehenkel

Aspen Bibliography

The presence of heterozygous individuals in a population is crucial for maintaining genetic diversity, which can positively affect fitness and adaptability to environmental changes. While inbreeding generally reduces the proportion of heterozygous individuals in a population, polyploidy tends to increase the proportion. North American Populus tremuloides is one of the most widely distributed and ecologically important tree species in the Northern Hemisphere. However, genetic variation in Mexican populations of P. tremuloides, including the genetic signatures of their adaptation to a variety of environments, remains largely uncharacterized. The aim of this study was to analyze how inbreeding coefficient (F …

Sex, Skulls, And Selection: An Exploration Of Blakely Island's Deer Population And Their Ecology Through Genetic Sex Differentiation Of Juvenile Crania, Blair P. Graves

Honors Projects

As an isolated landmass with no natural predators, Blakely Island serves as an effective study site for the study of evolutionary factors relating to insular populations of large mammals. A disparity in the adult sex ratio of local deer has been observed, but the demographics of juveniles must still be ascertained through genetic methods. This study aims to further research concerning the development of a replicable and non-toxic procedure through which undergraduate students can identify the sex of numerous juvenile deer crania. Specifically, differing decalcification lengths, DNA extraction kit methods, and amelogenin primer sets were evaluated for relative success in …

Neoadjuvant With Low-Dose Radiotherapy, Tislelizumab, Albumin-Bound Paclitaxel, And Cisplatin For Resectable Locally Advanced Head And Neck Squamous Cell Carcinoma: Phase Ii Single-Arm Trial, Zhigang Liu, Dong Wang, Guanjun Li, Muhua Yi, Zhaoyuan Zhang, Guihua Zhong, Liangfu Xu, Rong Jiang, Yannan Zheng, Linxuan Huang, Yingpeng Peng, Lizhong Liang, Jianpeng Li, Ye Liu, Jun Lai, Xianjuan Lv, Yongqiang Xu, Qiaodan Liu, Zhiqiang Wang, Zhutian Liu, Qinan Yang, Li Nie, Jiao Lei, Xiaotao Huang, Zhijie Liu, Wen Jiang

Faculty, Staff and Student Publications

Although pathological complete response (pCR) and major pathological response (MPR) rates of neoadjuvant immunotherapy combined with chemotherapy in head and neck squamous cell carcinoma (HNSCC) trials remain suboptimal, emerging evidence highlights the synergistic potential of combining low-dose radiotherapy with immunotherapy to promote the efficacy of immunotherapy. This phase II, open-label, single-arm, multicenter trial (NCT05343325) enrolled 28 patients with untreated stage III-IVB HNSCC (NeoRTPC02). Patients received neoadjuvant low-dose radiotherapy, the programmed death-1 (PD-1) inhibitor tislelizumab, albumin-bound paclitaxel, and cisplatin for two cycles, followed by radical resection ~4 weeks after treatment completion. The primary endpoint, pCR rate, was achieved in 14 of …

Assessing The Contribution Of Geography And Host Use To Genetic Structure In New York Populations Of The Parasitoid Wasp, Aphidius Ervi, Haley J. Plasman, David M. Althoff

The Great Lakes Entomologist

Host-associated differentiation (HAD) been proposed as a general mechanism for differentiation of many groups of parasitic organisms including plant-feeding insects and their natural enemies. In particular, parasitoid wasps that attack herbivorous insects have many life habits similar to other parasitic taxa, suggesting that HAD also may be important in differentiation. We tested for the population genetic signature of HAD in a parasitoid wasp, Aphidius ervi (Haliday), a biocontrol agent that uses many species of aphids throughout Europe, but is mainly limited to the clover and alfalfa host-races of the pea aphid Acyrthosiphon pisum (Harris) in North America. We assessed allelic …

Attraction Of Diabrotica Barberi Smith And Lawrence (Coleoptera: Chrysomelidae) To Eugenol-Baited Traps In Soybean, Louis S. Hesler

The Great Lakes Entomologist

Diabrotica barberi Smith and Lawrence (the northern corn rootworm) is a native North American leaf beetle and a major pest of corn. However, adult D. barberi forage in various habitats outside of corn fields, including soybean, roadside vegetation, and prairie. Eugenol is a common floral volatile that has been shown to increase trap catch of D. barberi within corn and prairie habitat. This paper documents the first report of increased catch of D. barberi on eugenol- baited traps in soybean fields. In two successive tests, catch of D. barberi was increased eight-fold or more by baiting traps with eugenol compared …

Are We Ready For Ai-Augmented Generalists?, Jiajie Zhang

Faculty, Staff and Student Publications

Artificial Intelligence (AI) is reshaping medical practice and education by unifying the knowledge of medical specialties and subspecialties into a single, intelligent system. This system functions not only as an integrated knowledge base but also as an active cognitive collaborator. By bridging knowledge gaps beyond the capacity of any individual clinician, AI could enable physicians to function as AI-augmented generalists who can perform certain tasks that require specialist training. These generalists may help mitigate care fragmentation, but realizing their potential will require significant changes in medical education.

The Manifestation Of Synesthesia In The Deaf, Hard-Of-Hearing, And Sign Language User Population, Elizabeth Droubi

Undergraduate University Honors Capstones

This capstone project investigated the prevalence and manifestation of synesthesia—a perceptual condition where stimulation in one sensory pathway triggers automatic, involuntary experiences in another—within d/Deaf, hard-of-hearing (DHH), and sign language user populations. Despite an estimated prevalence of over 4% in the general population and findings that many synesthetic experiences are language-based, little is known about how synesthesia presents across different language modalities, including signed languages. This project explored the phenomenon in two phases: an initial online survey assessing the prevalence and characteristics of synesthesia among DHH and signing individuals and follow-up interviews with self-reported synesthetes along with a test-retest procedure …

Stress-Related Phenotypic Differentiation Identified By Motivational Behaviors In Male Mice, Renee A. Brummels

Honors Thesis

Social stress substantially contributes to psychological disorders, including anxiety, depression, and post-traumatic stress disorder. Recognizing these disorders affect millions, it is essential to understand social stress’s impacts on behavior and how these behaviors vary among affected populations. We address these questions through a social defeat/avoidance paradigm, the Stress-Alternatives Model (SAM), which demonstrates defeat (Stay) and avoidance (Escape) responses across species, including fish, rats, hamsters, and mice. Avoidance of social conflict in the SAM is possible by utilizing escape routes for smaller test mice during aggressive interactions. Additionally, measurements of SAM motivational behaviors, like time near and nose pokes into escape …

06.16.2025 Ored Connect, Liz Williamson

ORED Newsletter

Email address Matters with SPAN and ARC Forms

Participant Support Costs training for PIs available in Blackboard

Assessing One-Year Health Impacts From Wildfires In Rural Communities: Roles For Extension In Promoting Wildfire Preparedness And Recovery, Marc T. Braverman, Sandi Cleveland Phibbs, Emily Jane Davis, Amanda Rau, Elijah Penner

Journal of Extension

Wildfires can produce health impacts that persist for years in affected communities. This article describes an Extension-led study of health impacts in rural Oregon communities one year after a destructive wildfire. Data collection included key informant interviews (n=36), an online survey (n=80), and three focus group interviews with survivors (n=23). Mental health, exposure to contaminants, physical stress, food insecurity, and other issues were frequently identified health concerns. Survivors’ difficulties in dealing with housing displacement significantly exacerbated health challenges. We describe potential roles for Extension in addressing wildfire risk and mitigating health impacts, including a description of the Oregon Fire Program.

Taking Flight: Utilizing Unmanned Aerial Systems To Sample Insects In Soybean, William "Covey" Lockhart

Theses and Dissertations

Insect scouting in soybean is a labor-intensive task but is needed throughout the season to minimize losses. When soybeans are tall, soils are wet, or soybeans are planted in narrow rows, walking through these fields can be difficult. To overcome these limitations of manual sampling, an unmanned aerial vehicle (UAV) sampling platform was developed that can collect insects in a sweep net attached to the bottom of a UAV. This system has been named the “Drone Insect Net Sampling System” (DINSS). Previous research with this system has shown positive correlations to traditional manual sampling methods. To improve this system, modifications …

Evaluation Of Plant Growth Regulators On Sweetpotato Slip Propagation, Kerington Lyn Bass

Theses and Dissertations

Sweetpotato production is often impacted by high mortality of slips during transplantation to the field, particularly with greenhouse-grown slips. These slips develop thinner stems, thus being more vulnerable to transplant shock, resulting in reduced establishment. To address this issue, the study evaluated the effects of four plant growth regulators on the morphological and anatomical characteristics of sweetpotato slips. In the first experiment, external growth parameters were recorded over four weeks, followed by post-harvest assessments of plant and root material. In the second experiment, the widths of various stem structures in stained cross-sections of slip stems were measured. Results showed that …

The Effects Of Ataxin-1 Overexpression In The Central Nervous System On Specific Behavioral And Physiological Characteristics Of Drosophila Melanogaster, Sydney Davis

Theses and Dissertations

Spinocerebellar ataxia type 1 (SCA1) is a dominantly inherited neurodegenerative disease caused by a CAG repeat expansion in the ataxin-1 gene, which results in an abnormally long polyglutamine tract. Similarly, overexpression of wildtype Ataxin-1 (wt-Atx-1) in Drosophila melanogaster leads to neurodegeneration, reduced lifespan, and impaired negative geotaxis. Observations include disruptions in sleep-wake cycles, increased oxidative stress biomarkers (like protein carbonyls), and dysregulation of developmental genes such as armadillo (arm) and nemo kinase (nmo). Additionally, elevated expression of SUMOylation-related genes (Aos-1, Uba2, and dSmt3 or dSumo) and increased SUMO protein levels indicate enhanced SUMOylation in the brain. Quantitative analysis of neuronal …

Evaluating The Efficacy Of Functional Feed Additives In Broilers With Or Without A Live Coccidiosis Vaccine Challenge, Dalton Gerard Dennehy

Theses and Dissertations

Functional feed additives, such as probiotics, prebiotics, and phytogenics, have seen increased usage in commercial poultry production due to their ability to improve growth performance, meat yield, and overall health status. Therefore, the objective of this research was to evaluate the efficacy of functional feed additives in broilers with or without an enteric challenge induced via a live coccidiosis vaccine (LCV). In the first study (Chapter II), broilers were raised on used litter without an LCV challenge and fed varying levels of a multi-strain Bacillus-based probiotic in the starter phase (1x or 2x dose). Reduced performance was observed in early …

Myxozoan Diversity And Life Cycles In Catfish Production Ponds In Mississippi, Usa, Ethan Woodyard

Theses and Dissertations

Catfish aquaculture is a critical industry in the United States and Mississippi in particular. The industry is beset by depredation, rising feed costs, competition with imports, and loss to disease. Chief among these is the myxozoan parasite and causative agent of proliferative gill disease, Henneguya ictaluri. In chapter 2, novel molecular markers for greater resolution in species identification of these parasites are provided, allowing more robust life cycle inference, species-level identifications, and inference of evolutionary relationships through molecular phylogenetic analyses. Chapters 3–5 apply the approaches developed in Chapter 2 to a broad array of taxa beyond catfish-infecting Henneguya spp. These …

Zn–Assisted Synthesis Of M (Mn/Fe/Co/Ni)-N-C Catalysts For Multifunctional Electrochemical Activity, Kemila A. Chaudhary

Electronic Theses & Dissertations

The design and development of atomically dispersed M-N-C catalysts (metal (M) supported on an nitrogen-carbon (NC) matrix with high multifunctional electrocatalytic performance is desirable but proved to be very challenging. Herein, we synthesized M-N-C catalysts (M = Fe, Co, Mn, and Ni) using Zn-assisted high temperature treatment and characterized using various techniques. The prepared catalysts were tested for their electrocatalytic performance towards oxygen and hydrogen evolution reaction (OER and HER) as well as oxygen reduction reaction (ORR) in alkaline media. The results indicated that Mn-N-C catalyst showed higher performance towards both the ORR (E_1/2 = 0.90 V) and …

Climate Resilience For Organic Vegetable Growers In The Midwest: Views, Needs, And Priorities Of Technical Service Providers, Natalie Hoidal, Greta Gramig, James Dedecker, Nicholas Frillman, Katie Black, Sarah Hayward, Rue Genger

Journal of Extension

As organic vegetable production becomes increasingly important in Upper Midwest food systems, Extension programs and partners must rise to the challenge of supporting growers with climate resilience. These growers are uniquely vulnerable to climate impacts, and addressing this challenge requires a networked approach. We report on a needs assessment and social network analysis process with technical service providers across the region to define the challenges, needs, and opportunities for building individual and institutional capacity to address climate change with growers. Results highlighted several focus areas, including improved communication, better access to funding, sound information, and cultural appropriateness.

Gardening Through The Pages: Making A State-Specific Catalog With Community Science Data, Stephen Stresow, Stephen Reiners, Ashley Miller Helmholdt

Journal of Extension

Taking a page from commercial seed catalogs, Cornell Garden-Based Learning created a state-specific catalog using top-rated vegetable varieties. Taste, yield, ease-to-grow, and overall ratings were collected over the past decade through community science garden programs. The catalog combines the reputable, research-backed information Extension information with the marketability of a seed catalog. This project streamlined information across multiple sites into a single document while presenting it in a novel way (for Extension). We note how we collected data, created it, feedback from gardeners, and offer suggestions for improvements.

Evaluation Of The Development Of Critical Life Skills As A Result Of Participating In Texas Youth Horse Judging Programs, Ashley N. Dibbs, Jennifer Zoller, Chelsie Huseman, Scott Cummings

Journal of Extension

Competitive judging teams are valued forms of extracurricular learning tools for many youth students. Unfortunately, unless individuals have direct involvement in these programs the benefits often go unnoticed and undocumented. A survey was designed to assess self-perceived life skill development from current and past horse judging participants, as well as youth life skill development observed by adults. Participants identified critical thinking, decision making, and public speaking as the highest rated life skills developed. Adults ranked self confidence, critical thinking and decision making as the skills they observe develop most frequently.

Reaching Tomorrow’S Extension Customer: A Food And Health Needs Assessment, Morgan Szczepaniak, Sarah L. Francis, Ruth Litchfield, Ulrike Genschel, Shannon Coleman, Anirudh Naig

Journal of Extension

The food and health needs and preferences of Iowans (n=452) were examined. The leading food and health information sources were online platforms, social media, and print media. Program topics with high participation likelihood were cooking, food preservation, food safety, and gardening. Short, low-cost, online programs were preferred. Extension use was more likely among those who identified as persons of color, Hispanic/Latino, or were food insecure (p < 0.030). Those with less education and chronic disease were less likely to be interested in Extension programming (p < 0.040). These results provide valuable information regarding future directions for Extension programming.

Spontaneous Pneumothorax In A Male High School Wrestler, Laura Breese, Sara Stiltner

Journal of Sports Medicine and Allied Health Sciences: Official Journal of the Ohio Athletic Trainers Association

OBJECTIVE/BACKGROUND
A pneumothorax is the presence of air in the pleural space, it is a life threatening condition and can be classified as spontaneous, acquired, or by pathophysiology. (1)(2) This specific case presents the incident of a spontaneous pneumothorax in an adolescent population.