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Nonosecond Pulsed Electric Field Induced Changes In Dielectric Properties Of Biological Cells, Jie Zhuang

Electrical & Computer Engineering Theses & Dissertations

Nanosecond pulsed electric field induced biological effects have been a focus of research interests since the new millennium. Promising biomedical applications, e.g. tumor treatment and wound healing, are emerging based on this principle. Although the exact mechanisms behind the nanosecond pulse-cell interactions are not completely understood yet, it is generally believed that charging along the cell membranes (including intracellular membranes) and formation of membrane pores trigger subsequent biological responses, and the number and quality of pores are responsible for the cell fate. The immediate charging response of a biological cell to a nanosecond pulsed electric field exposure relies on the …

Session 1c, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• The Effects of Prescribed Fire on Amphibian and Reptile Diversity in an Oak-Grassland Restoration Area, Robert Knopp and Howard Whiteman, Dept Biological Sciences and Watershed Studies, Murray State University
• Results of a Data Evaluation to Establish Priority Remediation Areas for Dry Weather Fecal Contamination in a Karst Influenced Watershed, Steve Evans and others, Third Rock Consultants, Lexington, KY
• Development of In-House Methods for High-Throughput DNA Extraction, Kimberly L. Cook and LorraBelle Hill, USDA-ARS, Bowling Green, KY
• Validation of the Sanitary Category Value Model (SCV) for the Identification of Leaking Sewer Lines: A Study of the West Hickman …

Proceedings Of 2012 Kentucky Water Resources Annual Symposium, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

This symposium was planned and conducted as a part of the state water resources research institute annual program that is supported by Grant/Cooperative Agreement Number G11AP20081 from the United States Geological Survey. The contents of this proceedings document and the views and conclusions presented at the symposium are solely the responsibility of the individual authors and presenters and do not necessarily represent the official views of the USGS or of the symposium organizers and sponsors. This publication is produced with the understanding that the United States Government is authorized to reproduce and distribute reprints for government purposes.

Proceedings Of The 39th Annual Meeting, Southern Soybean Disease Workers (March 7-8, 2012, Pensacola Beach, Florida), Tom Allen, Boyd Padgett, Danise Beadle, Stephen R. Koenning

Southern Soybean Disease Workers: Conference Proceedings

Contents

Symposium: Soybean Nematodes: Their Status, Impact and Management

The Current Status of Nematodes of Soybean in Louisiana and Arkansas. Charles Overstreet, Edward C McGawley, Melea Martin, and Terry Kirkpatrick

A Molecular Analysis of Resistance of Soybean to the Soybean Cyst Nematode. Vincent Klink

Racism in Nematology. Terry Niblack

SCN-resistant Soybeans, HG types, Yield, and SCN Reproduction: How It All Comes Together in the Field in Iowa. Gregory Tylka

Soybean Lines Evaluated for Resistance to Reniform Nematode. Sally Stetina

Graduate student presentations (Boyd Padgett, moderator)

Fungicide Resistance in Cercospora kikuchii, a Major Pathogen of Louisiana Soybean. Trey Price

Variation …

Dobzhansky's Dictum: An Object Lesson For Critical Thinking, William D. Stansfield

Biological Sciences

A creationist has called Dobzhansky's dictum a myth. Discussion of this debate could be used as an object lesson for critical thinking.

When Whales Became Mammals: The Scientific Journey Of Cetaceans From Fish To Mammals In The History Of Science, Aldemaro Romero Jr.

Publications and Research

No abstract provided.

The Structural Requirements Of Histone Deacetylase (Hdac) Inhibitors: Suberoylanilide Hydroxamic Acid (Saha) Analogues Modified At C3, C6, And C7 Positions Enhance Selectivity, Sun Ea Choi

Wayne State University Dissertations

Histone deacetylase (HDAC) proteins are targets for drug design towards the treatment of cancers since overexpression of HDAC is linked to cancer. Several HDAC inhibitors, including the FDA approved drug suberoylanilide hydroxamic acid (SAHA, Vorinostat), have cleared clinical trials and emerged as anti-cancer drugs. However, SAHA inhibits all of the 11 metal ion-dependent HDAC proteins. Therefore, we synthesized several libraries of small molecule HDAC inhibitors based on SAHA to help understand the structural requirements of inhibitory potency and isoform selectivity.

In previous work, SAHA analogues functionalized at the C2 position (C2-SAHA analogues) near the metal binding hydroxamic acid displayed decreased …

Chemical Reporters For Investigating Lipidated Proteins At The Host-Pathogen Interface, Guillaume Charron

Student Theses and Dissertations

Lipidation of proteins regulates many cellular processes such as signaling transduction and membrane sorting by modulating protein localization and proteinprotein interactions. As such, defects in protein lipidation can render host cells more susceptible to microbial infection and are also associated with a variety of human diseases ranging from cancer to neurological disorders. Moreover, viral and bacterial pathogens can exploit and modulate the host lipidation machinery to enhance infection. Robust biochemical methods for characterizing lipidated proteins are therefore important for understanding fundamental physiology and disease mechanisms. In this thesis, I report the development of alkyne-lipid chemical reporters that afford more sensitive …

The Cell Collective: Toward An Open And Collaborative Approach To Systems Biology, Tomáš Helikar, Bryan Kowal, Sean Mcclenathan, Mitchell Bruckner, Thaine Rowley, Alex Madrahimov, Ben Wicks, Manish Shrestha, Kahani Limbu, Jim A. Rogers

Department of Biochemistry: Faculty Publications

Background: Despite decades of new discoveries in biomedical research, the overwhelming complexity of cells has been a significant barrier to a fundamental understanding of how cells work as a whole. As such, the holistic study of biochemical pathways requires computer modeling. Due to the complexity of cells, it is not feasible for one person or group to model the cell in its entirety.

Results: The Cell Collective is a platform that allows the world-wide scientific community to create these models collectively. Its interface enables users to build and use models without specifying any mathematical equations or computer code - addressing …

Comparative Studies Of Six Populations Of Isoetes Panchganiensis From India, Brij Bhan Yadav, Sarvesh Kumar Singh, Manju Srivastava, Gopal Krishan Srivastava

Turkish Journal of Botany

Six populations of Isoetes panchganiensis G.K.Srivast., D.D.Pant & P.K.Shukla growing in different environmental conditions of the Western Ghats have been studied to determine the range of variation within the species. The present investigation does not show any variation in habitat (aquatic), rhizomorph (trilobed), velum (fenestra), and presence or absence of peripheral strands; however, there is a subtle variation in the length of plants, number of leaves, size of megasporangia, and size and ornamentation of the megaspores. The basic organisation of the megaspores of all the populations is almost same, but the finer details of the ornamentation of the megaspores exhibit …

Isospora Species (I. Canaria, Isospora Sp.) In Canaries (Serinus Canarius, Linnaeus), Cem Ecmel Şaki̇, Edi̇p Özer

Turkish Journal of Veterinary & Animal Sciences

Of 64 canaries with diarrhea in Elazığ Province between May 2002 and May 2006, 18 (28.1%) had Isospora oocysts in their feces. It was determined that the oocysts, examined morphologically before and after sporulating, were Isospora canaria and Isospora sp. Among the infected animals, 8 (44.4%) were concurrently infected with both species. Total numbers of I. canaria oocysts were greater than those of Isospora sp. A total of 2 canaries showing severe clinical signs were necropsied. Liver, spleen, and lung preparations and peripheral blood smears of the necropsied animals were examined for Atoxoplasma, and no development forms were seen. For …

Toward The History Of Study Of Symbiogenesis: On The English Translation Of B. M. Kozo-Polyansky’S A New Principle Of Biology (1924), Victor Fet

Biological Sciences Faculty Research

We reproduce the text by Victor Fet, which was read on 6 October 2011 at the Moscow Society of Naturalists during the presentation of new book translation (B.M. Kozo- Polyansky. Symbiogenesis: A New Principle of Evolution / transl. by Victor Fet; ed. by Victor Fet & Lynn Margulis. Cambridge, Mass.: Harvard University Press, 2010. 138 p.) This half- forgotten book by Boris M. Kozo-Polyansky was known only by name to Western biologists. Victor Fet gives a brief history of this new translation, enthusiastically initiated and supported by Lynn Margulis (1938–2011), a famous naturalist who was always eager to gave credit …

Mechanism Of Inhibition Of The Glua2 Receptors By N-3 Derivatives Of 2,3-Benzodiazepines With C-4 Methyl Group, Congzhou Wang

Legacy Theses & Dissertations (2009 - 2024)

α-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors are one of the three subtypes of ionotropic glutamate receptors. AMPA receptors mediate fast synaptic neurotransmission in the central nervous system (CNS). Over-activation of calcium permeable AMPA receptors causes intracellular calcium overload, which leads to neurodegeneration and cell death. As such, AMPA receptors have been implicated in a number of neurological disorders and diseases, such as epilepsy, amyotrophic lateral sclerosis (ALS), and Parkinson's disease. 2,3-Benzodiazepine derivatives (or GYKI compounds) are a group of structurally similar compounds synthesized as inhibitors of AMPA receptors, and they have been used as potential drug candidates for the treatment of various …

Diversity And Ecology Of Diatoms From Felent Creek (Sakarya River Basin), Turkey, Cüneyd Nadi̇r Solak, Sophia Barinova, Eva Acs, Hayri̇ Dayioğlu

Turkish Journal of Botany

Diatoms are an important group of aquatic ecosystems. To date, there have been many important algological studies in different river basins in Turkey. However, the use of diatoms in biomonitoring (according to diatom indices, Watanabe's or Van Dam's systems) is relatively new in Turkey. In the present study, 41 samples of epilithic diatoms were collected from 5 stations along Felent creek between June 2006 and February 2007 and a total of 117 diatom taxa were identified. The bio-indication (autoecology and abundance scores in the communities) of Felent creek was investigated and, as a result, the organic pollution indicators of Watanabe's …

Reproduction Of The Root Vole (Microtus Oeconomus) At The Edge Of Its Distribution Range, Linas Balciauskas, Laima Balciauskiene, Agne Janonyte

Turkish Journal of Zoology

Data on the reproduction of the root vole (Microtus oeconomus) in Lithuania, the margin of its geographic range, are presented in the context of litter size analysis. In Lithuania, the breeding season lasts from April until the end of October. The average litter size was 5.93 ± 0.11 (2-14), decreasing from a mean of 8.0 embryos in June to 4.3 in October, with 2-3 litters per year. The average body mass of breeding females was 40.4 ± 0.6 (16.5-77.0) g. However, 6.25% of females start breeding with a body mass of under 25 g. Litter size was found to increase …

Reproductive Biology Studies Towards The Conservation Of Two Rare Species Of Colchic Flora, Arbutus Andrachne And Osmanthus Decorus, Nina Melia, Laura Gabedava, Tinatin Barblishvili, Lali Jgenti

Turkish Journal of Botany

Our study examines the structural peculiarities of the generative sphere at different phases of development, and the processes of pollination, fertilisation, and seed formation in 2 species of wild flora: Arbutus andrachne L. (Ericaceae), the eastern strawberry tree, and Osmanthus decorus (Boiss. & Balansa) Kasapligil (Oleaceae), Caucasian osmanthus. These Arcto-Tertiary plants are included in the Red Data Book of the Georgian SSR. As germinable seeds are the main factor determining species distribution and the complete transfer of genetic information, the aim of our research was to establish the self-regeneration capacity of the species under study and choose optimum conditions for …

Behavioral And Immunological Phenotypes Of Transgenic Mice Overexpressing Human Secreted Amyloid Precursor Protein Alpha: Implications For Autism, Antoinette R. Bailey

USF Tampa Graduate Theses and Dissertations

Autism is a heterogeneous neurodevelopmental disorder that is characterized by impaired social interaction and communication as well as restricted and repetitive behaviors and focused interests. In addition to the cardinal behavioral characteristics observed for diagnosis, autistic individuals exhibit a number of comorbid conditions as well as a variety of aberrant immunological features. Recent studies report that plasma from autistic children contained elevated levels of secreted amyloid precursor protein alpha (sAPP-á), the á-secretase cleavage product of the amyloid precursor protein (APP) which is ubiquitously expressed in the brain, spleen, thymus and other organs. Interestingly, the sAPP-á fragment functions as a neurotrophic …

A Role For Reactive Oxygen Species In Photodynamic Therapy, Michael Price

Wayne State University Dissertations

Photodynamic therapy (PDT) is based on the ability of certain photosensitizing agents to selectively localize in neoplastic cells and their vasculature. Subsequent irradiation at a wavelength corresponding to a photosensitizer absorbance band excites the photosensitizer molecules, leading to energy transfer reactions and fluorescence. It was initially concluded that the phototoxic effect occurred when energy from the excited state of the photosensitizer was transferred to dissolved oxygen to form singlet oxygen. This product has a very brief half-life and will cause cellular damage only in the immediate vicinity of its formation. But an excited-state photosensitizer can also interact with oxygen to …

Evidence From Micromorphology And Gross Morphology Of The Genus Loranthus (Loranthaceae) In Iran, Robabeh Shahi Shavvon, Shahryar Saeidi Mehrvarz, Narges Golmohammadi

Turkish Journal of Botany

The genus Loranthus L. (Loranthaceae) is represented in Iran by 2 species: Loranthus europaeus Jacq. and L. grewingkii Boiss. & Buhse; the latter species is endemic to the area of Flora Iranica. The plants of Loranthus are hemiparasites growing on various host trees such as Quercus infectoria Oliv., Acer monspessulanum L., and Armeniaca vulgaris Lam. In order to investigate the range of morphological variation in different populations of these species, an inclusive gross morphological and micromorphological study was conducted. For this purpose, the anatomical characteristics of the stem, leaf, petiole, and fruit were also investigated. The most prominent features were …

Morphological Characterization And Molecular Mediated Genetic Variation Of Thief Ants (Hymenoptera: Formicidae), Ralph B. Narain, Shripat T. Kamble, Thomas O. Powers

Department of Entomology: Faculty Publications

The morphological characterization and molecular genetic variation were determined in populations of thief ants, Solenopsis molesta (Say). The genetic variations were elucidated using mitochondrial deoxyribonucleic acid (mDNA) sequences of cytochrome oxidase I. DNA from thief ants was extracted with Qiagen’s Gentra PUREGENE DNA Isolation Kit using their solid tissue protocol. Polymerase chain reactions (PCR) were run on the extracted DNA using primers Lep-F1 (forward) and Lep-R1 (reverse). The DNA products were concentrated and purified by Microcon Centrifugal Filter Unit YM-100. Purified DNA samples were sequenced at the University of Arkansas Medical Sciences (UAMS) DNA Sequencing Core Facility. The sequences were …

Biochemical Studies Of Abce1, Lynn Sims

Electronic Theses and Dissertations

The growth and survival of all cells require functional ribosomes that are capable of protein synthesis. The disruption of the steps required for the function of ribosomes represents a potential future target for pharmacological anti-cancer therapy. ABCE1 is an essential Fe-S protein involved in ribosomal function and is vital for protein synthesis and cell survival. Thus, ABCE1 is potentially a great therapeutic target for cancer treatment. Previously, cell biological, genetic, and structural studies uncovered the general importance of ABCE1, although the exact function of the Fe-S clusters was previously unclear, only a simple structural role was suggested. Additionally, due to …

Morphological And Neuroanatomical Changes Associated With The Induction Of Neurodegeneration And Life Span Reduction In Drosophila Melanogaster By Glia Targeted Expression Of Cdh1/Rap/Fzr, An Activator Of The Anaphase Promoting Complex, Israel Nnah

Dissertations and Theses

"The retina aberrant in pattern (rap) gene encodes the Fizzy-related protein (Fzr), an activator of the E3 ubiquitin ligase complex: the Anaphase Promoting Complex/Cyclosome (APC/C). APC/C facilitates the cell cycle stage-specific degradation of cyclins and other mitotic regulators, resulting in the inactivation of Cdk (Cyclin Dependent Kinase) complexes, thus promoting completion of mitosis. Previous studies from our laboratory have shown that Rap/Fzr (the Drosophila homolog of the mammalian Cdh1) regulates glia differentiation and promotes neuron formation. Recent studies have shown that the glia specific over expression of Rap/Fzr causes progressive neurodegeneration and life span reduction preceded by temperature sensitive paralysis, …

Development Of An In-Cell Förster Resonance Energy Transfer Technique To Study Protein Structure Inside Living Cells, Victoria Lynn Murray

Wayne State University Dissertations

The goal of my thesis is to develop an in-cell fluorescence technique that allows for measurement of the distances between fluorescence acceptors and donors within a protein or between two proteins inside the correct intracellular compartment of living cells. The successful achievement of this goal will allow us to obtain high-resolution structural information from a protein, one key step towards high-resolution structural biology of proteins inside the living cell.

To achieve this goal, we will apply the fluorescence resonance energy transfer (FRET) technique to the specifically labeled proteins inside the cells. Our rationale is to specifically label the protein(s) of …

Microtaxonomy Of Fragmenting Enchytraeus Species Using Molecular Markers, With A Comment On Species Complexes In Enchytraeids, Rut Collado, Eva Hass-Cordes, Ruediger Schmelz

Turkish Journal of Zoology

Populations of Enchytraeus that reproduce by fragmentation are distributed worldwide, but their species-level taxonomy is unresolved because morphological differences are inconclusive. Therefore, we compared the isozyme and RAPD-PCR patterns of 5 populations of fragmenting enchytraeids from widely distant localities (Japan, Iran, Greece, and Brazil). Among these populations, 3 were identified (E. japonensis, E. bigeminus, and E. dudichi) and 2 were unidentified. Multiple isozyme bands suggested polyploidy in all investigated populations. In all RAPD-PCR algorithms except 1, the fragmenting group formed a cluster separate from 2 nonfragmenting Enchytraeus species. All 5 populations were clearly separable on the levels of protein and …

Parasitic Hymenoptera Reared From The Insects On Heracleum Platytaenium Boiss. (Apiaceae) With New Faunistic And Biological Records, Erhan Koçak, Mustafa Özdemi̇r

Turkish Journal of Zoology

Some parasitic hymenopterans were reared from their host insects found on the stems and branches of Heracleum platytaenium Boiss., which contains furanocoumarins that are insect repellents and suppress growth in some species. Plant materials with insects were collected from the vicinity of Kızılcahamam in Ankara Province in July-September 2008. The parasitoids (Hymenoptera) and their hosts were Didyctium brunnea (Belizin) (Eucolidae) from puparia of Lasiambia albidipennis (Strobl) (Diptera: Chloropidae), Pronotalia carlinarum (Szelenyi & Erdos) (Eulophidae) and Homoporus febriculosus (Girault) (Pteromalidae) from puparia of Melanagromyza heracleana Zlobin (Diptera: Agromyzidae), and Baryscapus crassicornis (Erdos) (Eulophidae) from larvae, pupae, and adults of Lixus nordmanni …

In Vitro Study Of The Microsporidian Parasite Loma Morhua, Using Cod-Derived Cells And Novel Culture Techniques, Michael J. Macleod

Theses and Dissertations (Comprehensive)

The cod populations of the Canadian Atlantic were once highly productive, generating enormous annual harvests and attracting fishing fleets from many nations. However, through the late 1980s improved fishing technology, unprecedented capture rates, and poor fishery management brought wild stocks beyond the point of collapse. Dwindling harvests in the early 1990s resulted in cod fishing moratoriums, and an end to the productivity for which the fishery was once renowned. Atlantic cod remains a popular food worldwide and the collapse of cod fisheries has done little to abate market demands. Consequently, the cod is considered a prime candidate for aquaculture production, …

Genetic Measures Confirm Familial Relationships And Strengthen Study Design, Stacie J. Robinson, Ryan D. Walrath, Timonthy R. Vandeelen, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Social structure and behavioral interactions between individuals shape basic biological processes, such as breeding; foraging and predator avoidance; movement and dispersal; and disease transmission. We used a targeted trapping strategy to capture kin groups of white-tailed deer (Odocoileus virginianus) during 2007 and 2008 in Sandhill Wildlife Research Area, Wisconsin, USA, in order to observe social behaviors. Because inferring family relationships from observation of behavior is subjective, we usedmeasures of genetic relatedness and parentage assignment tests to determine that our capture strategy was efficient for capturing related pairs (78% of groups contained 1 dyad of related animals). The results of …

Probing Molecular Mechanisms Of The Hsp90 Chaperone: Biophysical Modeling Identifies Key Regulators Of Functional Dynamics, Anshuman Dixit, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

Deciphering functional mechanisms of the Hsp90 chaperone machinery is an important objective in cancer biology aiming to facilitate discovery of targeted anti-cancer therapies. Despite significant advances in understanding structure and function of molecular chaperones, organizing molecular principles that control the relationship between conformational diversity and functional mechanisms of the Hsp90 activity lack a sufficient quantitative characterization. We combined molecular dynamics simulations, principal component analysis, the energy landscape model and structure-functional analysis of Hsp90 regulatory interactions to systematically investigate functional dynamics of the molecular chaperone. This approach has identified a network of conserved regions common to the Hsp90 chaperones that could …

The Flora Of Greater San Quintín, Baja California, Mexico (2005–2010), Sula E. Vanderplank

Aliso: A Journal of Systematic and Floristic Botany

The plants of San Quintín (Baja California, Mexico) were documented through intensive fieldwork and collection of herbarium specimens to create a checklist of species. The region is located near the southernmost extent of the California Floristic Province, and the flora is influenced by the adjacent desert to the south. A total of 435 plant taxa were documented, of which 82% are native plants. Almost one in three native plant taxa in Greater San Quintín is a sensitive species, here documented as rare and/or locally endemic, and many taxa have yet to be evaluated fully for rarity and threats. Four major …

Synthesis Of Resveratrol Esters And Aliphatic Acids., Stanley Mofor Jing

Electronic Theses and Dissertations

Resveratrol (RV) is a naturally occurring phytoalexin of the stilbenoid family produced by some plant species, and present in grape skin, peanuts, and red wine. It has been found to exhibit anti-cancer, anti-inflammatory, anti-viral, anti-aging, cardio protective, and anti-oxidant properties. Bioavailability is a huge setback that limits the potentials of RV. As a result, efforts have been made to design and synthesize RV esters and aliphatic acids in an attempt to increase its bioavailability, solubility in water, and possibly improving its biological activities. Resveratrol esters, 3,5,4'-triacetyloxystilbene (2) and Methyl 1,1',1''- (3,4',5-stilbenyl)-1,6-hexanedioate (3) have been synthesized. Compound 3 is a new …