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Identification Of A New Fatty Acid Catabolic Pathway During Heterotrophic Growth In Chlamydomonas Reinhardtii, Clayton Mccuiston

Honors Capstones

No abstract provided.

Applying Gps And Accelerometers To The Study Of African Savanna (Loxodonta Africana) And Asian Elephant (Elephas Maximus) Welfare In Zoos, Matthew Robert Holdgate

Dissertations and Theses

African savanna elephants (Loxodonta africana) and Asian elephants (Elephas maximus) are a focus of welfare research in zoos due to their high intelligence, complex social structure, and sheer size. Due to these challenges, some argue that zoos are inherently incapable of providing appropriate care for elephants, while others believe that zoos can fulfill the needs of these species with improved husbandry. There is a general consensus from both within and outside of zoos, however, that zoos must improve their elephant programs or cease exhibiting these animals altogether. Now more than ever, applied research on zoo elephant welfare is needed to …

Belief About Nicotine Selectively Modulates Value And Reward Prediction Error Signals In Smokers, Xiaosi Gu, Terry Lohrenz, Ramiro Salas, Philip R. Baldwin, Alireza Soltani

Dartmouth Scholarship

Little is known about how prior beliefs impact biophysically described processes in the presence of neuroactive drugs, which presents a profound challenge to the understanding of the mechanisms and treatments of addiction. We engineered smokers' prior beliefs about the presence of nicotine in a cigarette smoked before a functional magnetic resonance imaging session where subjects carried out a sequential choice task. Using a model-based approach, we show that smokers' beliefs about nicotine specifically modulated learning signals (value and reward prediction error) defined by a computational model of mesolimbic dopamine systems. Belief of "no nicotine in cigarette" (compared with "nicotine in …

Human Animal Chimeras For Therapeutic Protocols, Bracha Sklar

The Science Journal of the Lander College of Arts and Sciences

Research on humans is limited, therefore human animal chimeras have been used to study human systems. A Human animal chimera is an animal containing animal and human cell lines. The primary goal of human animal chimera research is to establish an animal with human cellular characters, which can and should more realistically be able to imitate as closely as possible the in vivo situations in humans. This research is very important, because it allows scientists to study human systems in vivo using a humanized animal model. However ethical issues arise when experimenting with humans and animals being mixed together. Using …

Engaging Students In Current Topics: Ecosystem Disruption, Sarah O'Leary-Driscoll

Faculty Publications & Research

One of the most compelling aspects of studying biology is that it has immediate relevance to the world around us. It is the study of life, which can give us amazing insight into how we as organisms work as well as our place in Earth’s ecosystem. This second point is especially crucial for our students to understand, as the Earth is in many ways in a state of ecological crisis. Ecosystems across the globe are changing, often as the result of human influence, and an understanding of the causes and effects of these changes is essential for our students, especially …

Effects Of Long-Term Exposure Of Female Rats To Low Levels Of Lead: Ovary And Uterus Histological Architecture Changes, Eugenia Dumitrescu, Viorica Chiurciu, Florin Muselin, Roxana Popescu, Diana Brezovan, Romeo Teodor Cristina

Turkish Journal of Biology

The aim of the current study was to evaluate lead accumulation in the ovaries, fallopian tubes, and uterus and to take note of any consequent histo-architectural changes. The experiment involved a 12-month chronic exposure of 28 Wistar female rats at sexual maturity (221 ± 0.88 g/individual) to lead acetate in drinking water. The rats were divided into 4 groups based on the level of lead exposure: E1 at 0.050 mg L^{-1}, E2 at 0.100 mg L^{-1}, E3 at 0.150 mg L^{-1} , and a control group that received tap water. Lead level evaluation was performed by atomic absorption spectrometry at …

Age Structure Of Hemidactylus Turcicus (L., 1758) (Sauria: Gekkonidae) From Southwestern Anatolia (Muğla, Turkey), Betül Kanat, Cemal Varol Tok

Turkish Journal of Zoology

In this study, a total of 36 (12♂♂, 18♀♀, 6 juveniles) Hemidactylus turcicus specimens, caught in the vicinity of Muğla (Turkey) between 2006 and 2011, were evaluated using the skeletochronology method. The mean snout-to-vent length (SVL) was measured as 28.45 ± 1.92 mm for juveniles, 50.53 ± 1.06 mm for males, and 51.1 ± 0.75 mm for females. When the cross-sections were examined, the age range was determined to be 4-8 years in the males and 4-9 years in the females. Individuals reach sexual maturity in 2-3 years. The maximum age was calculated as 9 years for a female. It …

Assessing Age, Growth, And Reproduction Of Alburnus Mossulensis And Acanthobrama Marmid (Cyprinidae) Populations In Karakaya Dam Lake (Turkey), Aysel Alkan Uçkun, Di̇dem Gökçe

Turkish Journal of Zoology

In total, 626 individuals of Alburnus mossulensis and 586 individuals of Acanthobrama marmid were collected monthly from Karakaya Dam Lake on the upper Euphrates River. The gonadosomatic index, somatic condition, oocyte size, and fecundity were calculated on a monthly basis. Reading of scales indicated that the maximum age was 4+ years for A. mossulensis and A. marmid. The estimated length-weight relationships were W = 0.206 × FL^{2.065} for females and W = 0.119 × FL^{2.138} for males in A. mossulensis, and W = 0.029 × FL^{2.678} for females and W = 0.030 × FL^{2.631} for males in A. marmid. Growth …

A Karyotype Comparison Among 3 Species Of Allactaga (Mammalia: Dipodidae) From Central Iran, Maryam Rahimi-Pozve, Mansoureh Malekian, Mahmoud-Reza Hemami

Turkish Journal of Zoology

We studied karyotype and chromosomal characteristics of 3 species of five-toed jerboa from central Iran, including Allactaga firouzi, A. williamsi, and A. elater. This study revealed that the 3 species possessed a diploid number of 48 chromosomes. The first pair of chromosomes was significantly larger than other chromosomes in all 3 species. The total length of the haploid genome of Allactaga elater was longer than those of the other 2 species, and most of the chromosomes of the 3 species were metacentric. Based on total form percentage, interchromosomal asymmetry index, and centromeric index, Allactaga elater had the highest interchromosomal asymmetry. …

Behavior Of Gold Nanoparticles In Physiological Environment And The Role Of Agglomeration And Fractal Dimension, Rose Cooper

Browse all Theses and Dissertations

The Present study was designed to examine the role of agglomeration, density and the resulting fractal dimension of nanomaterials in cell culture media. Studies were completed on the kinetics and the process of agglomeration, as well as how to calculate fractal dimensions. The correlation of such complex agglomeration patterns of nanomaterials in culture media, their translocation into cells, and toxic effects were observed. Our results showed that smaller primary particles agglomerated at an accelerated rate when compared to the larger primary particles. They also demonstrated increased cellular uptake, but exhibited lower fractal dimensions. The larger primary particle agglomerates displayed obvious …

Platination Kinetics: Insight Into Rna-Cisplatin Interactions As A Probe For Rna Microenvironments, Gayani Dedduwa-Mudalige

Wayne State University Dissertations

RNAs are crucial for many cellular functions. Thus, studying ligand-RNA interactions and their dynamics in response to changes in the surrounding environment is important. In spite of the well-known DNA coordination, current research also indicates cisplatin binding to RNA. Kinetic studies of rRNA platination reactions are largely unexplored. This research was conducted to achieve two objectives. First, a broad kinetic study was carried out to investigate the cisplatin-rRNA interactions. The structure, function, and ligand interactions depend on RNA microenvironments. Second, the application of platination kinetics as a tool to interrogate RNA electrostatic environments was explored.

Three model rRNA hairpins from …

A Revision Of The New World And Select Old World Species Of Cremnops Förster (Hymenoptera: Braconidae: Agathidinae), Erika M. Tucker

Theses and Dissertations--Entomology

Parasitoid wasps are an important group of organisms in need of systematic revision. This dissertation examines the cosmopolitan parasitoid wasp genus Cremnops. It is a compilation of three projects and significantly advances the taxonomic foundation of the genus.

The New World species of the genus Cremnops are revised. Thirty-three species of Cremnops are treated; five are described as new, i.e., C. bertae sp. nov., C. cluttsis sp. nov., C. nymphius sp. nov., C. wileycoyotius sp. nov. and C. witkopegasus sp. nov. Six species are synonymized, i.e., Cremnops caribensis Berta 1998, is synonymized under C. guanicanus Wolcott 1924; C. nigrosternum (Morrison …

The Therapeutic Targeting Of Folate Receptor Alpha Positive Tumors Via Folate Receptor Selective Novel 5- And 6- Substituted Pyrrolo [2,3-D]Pyrimidine Antifolates", Shermaine Kimberly Mitchell-Ryan

Wayne State University Dissertations

Ovarian Cancer is the fifth leading cause of cancer-related death of women in the United States. Epithelial Ovarian Cancer (EOC) constitutes 85-90% of malignancies within the ovary, with an alarming majority of these cases diagnosed at advanced stage. While most patients are initially highly responsive to the current treatment standard, there is a very high probability that they will recur with a drug resistant fatal disease. Currently there is no validated comprehensive model of disease progression for ovarian cancer, although tremendous progress has been made in understanding the origin of this disease and a putative precursor lesion has been identified …

The Effects Of Landscape On Malaria Vectors Of The Neotropics, William David Lainhart

Legacy Theses & Dissertations (2009 - 2024)

Worldwide malaria control efforts have had varying degrees of success, leaving many countries either eliminating malaria or controlling malaria. In order to maintain forward momentum toward malaria elimination, malaria-eliminating and –controlling countries require different information regarding risk factors, spatial distributions of cases and vectors, vector biology metrics, and vector population genetics. The goal of this dissertation work was to provide information that addresses the knowledge gaps preventing the creation of effective vector and malaria control programs in one malaria-eliminating country (Panama) and two malaria-controlling countries (Peru and Brazil). Case data from Panama were analyzed to assess differences in risk factors …

Brown Adipogenesis Of Mouse Embryonic Stem Cells In Alginate Microstrands, Andrea Mannarino Unser

Legacy Theses & Dissertations (2009 - 2024)

The ability of brown adipocytes (fat cells) to dissipate energy as heat shows great promise for the treatment of obesity and other metabolic disorders. Employing pluripotent stem cells, with an emphasis on directed differentiation, may overcome many issues currently associated with primary fat cell cultures. However, brown adipocytes are difficult to transplant in vivo due to the instability of fat, in terms of necrosis and neovascularization, once injected. Thus, 3D cell culture systems that have the potential to mimic adipogenic microenvironments are needed, not only to advance brown fat implantation, but also to better understand the role of brown adipocytes …

A Novel Method For Studying Gene Regulatory Elements In Vivo Reveals Essential Roles For Intron Splicing In Neurofilament Gene Expression, Chen Wang

Legacy Theses & Dissertations (2009 - 2024)

Axon outgrowth requires coordinated expression of critical cytoskeletal genes in response to extracellular cues. The spatial and temporal expression of these genes is regulated transcriptionally and posttranscriptionally. Such regulation is largely mediated through the activity of cis-regulatory elements within the cytoskeletal DNAs and RNAs, which recruit specific sets of trans-factors such as DNA- and RNA-binding proteins, as well as microRNAs. To identify the functionally active cis-elements, characterize their dynamically changing sets of trans-factors, and investigate the association between the two sets of regulators in the context of an intact developing nervous system, one needs to combine appropriate in vivo strategies …

Evolution Of New Duplicate Genes In Arabidopsis Thaliana, Nicholas Curtis Marowsky

Wayne State University Theses

Abstract

Gene duplication is one of the major mechanisms by which organisms expand their genomes. The material added to the genome can then be acted upon by mutation and natural selection to increase the fitness of the species. By studying these duplicate sequences we can understand the process by which species evolve new functional genes. In a previous paper we identified 100 new duplicate genes through a genome wide comparison between A. thaliana and related species. We selected three of these new duplicate genes and investigated more closely their sequence and expression divergence from their parental gene. The three new …

Cytokine Dynamics, Diagnosis And Treatment Of Neuroinflammation In Chronic Constriction Injury Rat Model, Kiran Vasudeva

Electronic Theses and Dissertations

Chronic neuropathic pain is a serious, worldwide health problem leading to life-long treatment and the possibility of significant disability. In this study, neuropathic pain was modeled using the chronic constriction injury (CCI) in rats. The CCI rats exhibited hypersensitivity (typical neuropathic pain symptom) to mechanical stimulation of the affected paw 11 days post-surgery, at a time when sham surgery animals did not. It is known that immune cells play a role in the development of neuropathic pain and to further explore the relationship between neuropathic pain and immune cells, we hypothesized that the infiltration of immune cells into the affected …

Effects Of Low Concentrations Of Carbon Nanotubes On Growth And Gas Exchange In Arabidopsis Thaliana, Rajeeva Voleti

Graduate Theses/Dissertations

The effect of pure single-walled carbon nanotubes (SWCNTs) on plant growth and gas exchange was investigated in Arabidopsis thaliana. To date there has been no research on the effects of SWCNTs on whole plant physiology. A. thaliana seeds were directly grown in growth medium containing SWCNTs concentrations of 24.93micrograms/ml and 53.55 micrograms/ml. control plants were grown in media containing distilled water. I determined growth by measuring dry mass of plants. I determined gas exchange by measuring photosynthetic rates, stomatal conductance, transpiration rates, and water use efficiency. I also examined the following physiological mechanisms that would limit plant growth: ATP and …

A High-Content Multiplexed Screening Platform For The Evaluation And Manipulation Of Force And Fatigue Of Adult Derived Skeletal Muscle Myotubes In Defined Serum-Free Medium, Christopher Mcaleer

Electronic Theses and Dissertations

The overall focus of this project has two parts: First, was to develop a protocol utilizing serum-free media formulations and defined plating and culture techniques to create functional in vitro myotubes derived from adult skeletal muscle satellite cells. The second was to manipulate the inherent muscle parameters such as force output and fatigue of these myotubes by employing exercise regimes or by small molecule application. The importance of serum-free medium use for in vitro cultures is becoming increasingly important in creating functional systems that can be validated for drug testing by the Food and Drug Administration (FDA). Also, the study …

Issue 4

The Synapse: Intercollegiate science magazine

No abstract provided.

Thermal Variation, Thermal Extremes And The Physiological Performance Of Individuals, W. Wesley Dowd, Felicia A. King, Mark W. Denny

Biology Faculty Works

In this review we consider how small-scale temporal and spatial variation in body temperature, and biochemical/physiological variation among individuals, affect the prediction of organisms’ performance in nature. For ‘normal’ body temperatures – benign temperatures near the species’ mean – thermal biology traditionally uses performance curves to describe how physiological capabilities vary with temperature. However, these curves, which are typically measured under static laboratory conditions, can yield incomplete or inaccurate predictions of how organisms respond to natural patterns of temperature variation. For example, scale transition theory predicts that, in a variable environment, peak average performance is lower and occurs at a …

Primer Efficacy In The Dna Barcoding Of Spiders, Rhennetta Jo Bork

Honors Program Theses

DNA barcoding is the process of amplifying a 650 base pair segment of the sequence of the mitochondrial gene cytochrome c oxidase (COI), and amplifying this gene with a polymerase chain reaction (PCR). It is used to help identify and distinguish animal species and also to help determine genetic differences in species. DNA barcoding can be especially useful when working with spiders since they tend to be very small and hard to distinguish. However, achieving a DNA barcode can be difficult and thus techniques to improve the method of DNA barcoding can be helpful. This research looked into the different …

A Comparison Of Two Low-Stakes Methods For Administering A Program-Level Biology Concept Assessment, Brian A. Couch, Jennifer K. Knight

School of Biological Sciences: Faculty Publications

Concept assessments are used commonly in undergraduate science courses to assess student learning and diagnose areas of student difficulty. While most concept assessments align with the content of individual courses or course topics, some concept assessments have been developed for use at the programmatic level to gauge student progress and achievement over a series of courses or an entire major. The broad scope of a program-level assessment, which exceeds the content of any single course, creates several test administration issues, including finding a suitable time for students to take the assessment and adequately incentivizing student participation. These logistical considerations must …

Cdna Cloning, Molecular Characterization, And Expression Analyses Of Two Novel Porcine Arrdc Genes-Arrdc1 And Arrdc, Hailong Huo, Pei Wang, Shuyan Wang, Yongwang Miao, Hongjiang Wei, Yongyun Zhang, Qiaoling Zhang, Fuquan Li, Lixian Liu, Rui Wang, Weizhen Li, Yue Zhao, Jinlong Huo, Heng Xiao

Turkish Journal of Biology

Arrestin-domain-containing proteins belong to the arrestin family, embers of which are important for regulating signal transduction within cells. In this study, two ARRDC genes (ARRDC1 and ARRDC5) of Diannan small-ear pigs were amplified by reverse transcription polymerase chain reaction and cloned for the first time (accession nos.: KF589202 and KF589203). The full-length coding sequence of ARRDC1 was 1284 nucleotides in length (molecular weight, 45.6 kDa; pI, 7.61) and encoded 427 amino acids. The ARRDC5CDS was 1014 nucleotides in length (molecular weight, 37.5 kDa; pI, 7.08) and encoded 337 amino acids. Sequence homology analysis revealed that the amino acid sequences of …

The Door At The End Of The Hall Or Why There Is Life On Earth, And Why We Should Have Seen It Coming, Kirk Pearson

The Synapse: Intercollegiate science magazine

No abstract provided.

The Phytotronist And The Phenotype: Plant Physiology, Big Science, And A Cold War Biology Of The Whole Plant., David Munns

Publications and Research

This paper describes how, from the early twentieth century, and especially in the early Cold War era, the plant physiologists considered their discipline ideally suited among all the plant sciences to study and explain biological functions and processes, and ranked their discipline among the dominant forms of the biological sciences. At their apex in the late-1960s, the plant physiologists laid claim to having discovered nothing less than the “basic laws of physiology.” This paper unwraps that claim, showing that it emerged from the construction of monumental big science laboratories known as phytotrons that gave control over the growing environment. Control …

Developing A Gene Editing System To Study Haplodiploidy In The Jewel Wasp, Nasonia Vitripennis, Emily A. Muller

Scripps Senior Theses

Hymenopteran insects, which include all ants, bees and wasps, reproduce through a poorly understood form of reproduction known as haplodiploidy. A promising experimental system for understanding this developmental process is the jewel wasp, Nasonia vitripennis. A critical aspect of using Nasonia as a model is establishing an effective means for editing specific genes of interest so that their functions can be studied through genetic means. For my thesis research, I performed a pilot study of the gene editing method known as CRISPR in Nasonia. I targeted the single heterochromatin protein 1 (HP1) gene present in the Nasonia genome …

Histomorphometric And Fractal Analysis Of Femoral, Tibial, And Metatarsal Compact Bone Samples In Sheep (Ovis Aries), Goat (Capra Hircus), And Roe Deer (Capreolus Capreolus), Alexandru Gudea, Andrei Stefan

Turkish Journal of Veterinary & Animal Sciences

Histological sections of femur, tibia, and metatarsals originating from sheep (Ovis aries), goat (Capra hircus), and roe deer (Capreolus capreolus) were examined in this study. Our research focused mainly on the quantitative characteristics of the microstructure of these bones. The areas, perimeters, minimum and maximum diameters of the secondary Haversian units, as well as structures of the primary osteonal units were assessed using comparative statistical methods. In addition to these parameters, the present paper investigated the usefulness of fractal analysis (fractal dimension and lacunarity), a new approach that quantifies the complexity and the emptiness pattern of biological structures. Moreover, our …

Is Anthropogenic Cougar Mortality Compensated By Changes In Natural Mortality In Utah? Insight From Long-Term Studies, Michael L. Wolfe, David N. Koons, David C. Stoner, Patricia Terletzky, Eric M. Gese, David M. Choate, Lise M. Aubry

United States Department of Agriculture Wildlife Services: Staff Publications

Understanding the interplay between exploitation and natural mortality is essential to guiding sustainable conservation of wildlife. Exploitation of carnivores by humans has long been thought to result in compensatory reductions of natural mortality among survivors. If rates of human exploitation exceed natural mortality, however, such actions will ‘add’ to overall mortality and could imperil the sustainability of such actions. We applied competing risk analyses to >/= 16 years of data for heavily harvested and semi-protected cougar populations in Utah to test the additive and compensatory mortality hypotheses, while accounting for parameter uncertainty. We additionally tested for presence of the two …