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Investigating The Role Of Lysophosphatidic Acid Receptor 3 In Ocular Surface Ion Transport And Fluid Secretion, Ethan Lindgren

Natural Sciences and Mathematics | Biological Sciences Master's Theses

Dry eye disease (DED) is a multifactorial disease that drives tear film instability and hyperosmolarity, directly damaging the ocular surface epithelium. Lysophosphatidic acid receptor (LPAR) is a G-protein coupled receptor (GPCR) responsible for Ca²⁺ and cAMP mobilization via PLC and adenylyl cyclase activation, respectively. LPAR signaling is involved in cell proliferation and wound healing in human corneal epithelial cells (HCECs) as well as in neuropathic pain. This study aims to investigate expression and functional roles of LPAR3 in ocular surface. Ocular surface potential difference (OSPD) and tear fluid volume measurements were performed in mice with topically applied LPAR modulators. …

Network Analysis Of Antimicrobial Resistance In Staphylococcus Aureus: Characterization Of Hub Genes And Their Functional Implications, Md Imran Hasan, Davida Smyth, Jeong Yang, Ashley Teufel

Masters Theses (Archived)

Antimicrobial resistance is a major cause of morbidity and mortality in patients with S. aureus infections. In this study, we analyzed genes, molecular mechanisms, and pathways driving drug resistance in S. aureus using network analysis. Using whole-genome sequencing (WGS) data and systems biology approaches, we identified 229 AMR-associated genes and constructed a protein-protein interaction network among these genes. Through network topology and functional enrichment analyses, we not only confirmed their association with resistance, but also highlighted the central roles of these genes in resistance pathways, such as efflux, target replacement, and target protection, which are directly linked to multiple drug …

Evaluation Of Schoenoplectus Californicus In An Artificial System For E. Coli Removal, Kimia Ahmadiyehyazdi

Masters Theses (Archived)

Green technologies and nature-based solutions like constructed wetlands have be come more popular due to their environmentally friendly approach to remediation, low cost of construction, and maintenance. Also, they have shown efficiency in removing a wide range of contaminants. However, choosing a suitable aquatic plant for this system is one of the questions that should be answered wisely. Schoenoplectus californicus– Giant Bulrush is an aquatic plant that was tested in this controlled constructed wetland, and the final concentration of the targeted microbial contamination, which is E. coli, was reduced remarkably. Also, for this study, soil was removed from the …

Honey Bee & Reward Loss: A Deep Dive Into The Alarm Pheromone, Citlalli Guadarrama

Masters Theses (Archived)

No abstract provided.

Histone Methyltransferase Ash1l Primes Metastases And Metabolic Reprogramming Of Macrophages In The Bone Niche, Chenling Meng, Kevin Lin, Wei Shi, Hongqi Teng, Xinhai Wan, Anna Debruine, Yin Wang, Xin Liang, Javier Leo, Feiyu Chen, Qianlin Gu, Jie Zhang, Vivien Van, Kiersten L Maldonado, Boyi Gan, Li Ma, Yue Lu, Di Zhao

Faculty, Staff and Student Publications

Bone metastasis is a major cause of cancer death; however, the epigenetic determinants driving this process remain elusive. Here, we report that histone methyltransferase ASH1L is genetically amplified and is required for bone metastasis in men with prostate cancer. ASH1L rewires histone methylations and cooperates with HIF-1α to induce pro-metastatic transcriptome in invading cancer cells, resulting in monocyte differentiation into lipid-associated macrophage (LA-TAM) and enhancing their pro-tumoral phenotype in the metastatic bone niche. We identified IGF-2 as a direct target of ASH1L/HIF-1α and mediates LA-TAMs' differentiation and phenotypic changes by reprogramming oxidative phosphorylation. Pharmacologic inhibition of the ASH1L-HIF-1α-macrophages axis elicits …

Discrimination Of Sprat Species (Clupeonella Spp.) In The Caspian Sea And The Sea Of Marmara Using Otolith Shape Analysis, Mohammad Reza Shariati, Mohammad Sadegh Alavi-Yeganeh, Mehdi Ghanbarifardi, Gülşah Saç, Müfi̇t Özuluğ, Erdoğan Çi̇çek

Turkish Journal of Zoology

This study evaluates the discriminating power of sagittal otolith shape among three species of the genus Clupeonella endemic to the Caspian Sea (Clupeonella grimmi, Clupeonella caspia, and Clupeonella engrauliformis) and one species from the Sea of Marmara (Clupeonella Cultriventris). Identification of these species is challenging due to their morphological similarities, and the taxonomic validity of C. caspia and C. cultriventris remains ambiguous because of their resemblance. Scanning electron microscope (SEM) images were utilized to examine the morphological characteristics of otoliths. Stereomicroscope images were used to calculate six shape indices: rectangularity, roundness, ellipticity, circularity, aspect ratio, and form factor. The outline …

Molecular Phylogeny And Population Structure Of Eurygaster Integriceps (Hemiptera: Scutelleridae) In The Southeastern Anatolia Region Of Türkiye, Mehmet Sali̇h Özgökçe, Merve Doğaç, Hi̇lmi̇ Kara

Turkish Journal of Zoology

The aim of this study was to determine the identity and distribution of the sunn pest Eurygaster spp. and to quantify the population density in wheat fields across Southeastern Anatolia, Türkiye. A total of 309 samples were collected from 76 fields in 54 districts across all provinces within the study region, where wheat production is intensive. A combination of morphological and molecular techniques was employed to identify the collected specimens. Morphological identification was based on male genitalia, and PCR amplification of the COI mitochondrial gene region was used for DNA barcoding. Both morphological and molecular analyses confirmed that all collected …

Assessment Of Pyriproxyfen 0.5% (Juvenile Hormone Analog) Against Mosquito (Diptera: Culicidae) Larvae: A Multiscale Study From Laboratory To Field, Neetu Kachhwaha, Vinod Kumari, Rajbala Verma, Nirmala Sharma, Asif Khan, Mohit Singh, Sanyam Nimoria, Priyadarshini Sharma

Turkish Journal of Zoology

Vector control strategies increasingly focus on nonconventional chemicals with high insecticidal efficacy, persistence, and low toxicity to nontarget organisms. The present multiphase study, conducted in laboratory, semifield, and field conditions in Jaipur, Rajasthan, India, evaluated the efficacy of pyriproxyfen (0.5%) (juvenile hormone analog) in controlling mosquito emergence. Laboratory bioassays demonstrated significant susceptibility of Culex tritaeniorhynchus Giles, 1901 (Diptera: Culicidae) larvae, with the first and second instars exhibiting 100% mortality at 1 ppm and third and fourth instars showing emergence inhibition (IE) of 86.11% and 65.28%, respectively. Probit analysis determined lower LC₅₀, LC₉₀, and LC₉₉.₉ values for the first instar larvae …

Protein Composition Of The Foam Nest Of Rhacophorus Reinwardtii (Schlegel, 1840) (Anura: Rhacophoridae), With Notes On Breeding Sites Characteristics And Biomedical Applications, Muhammad Asyraf Rijalullah, Nia Kurniawan, Nia Kurnianingsih

Turkish Journal of Zoology

Rhacophorus reinwardtii is endemic to Java Island and is currently experiencing a population decline. Therefore, the sustainability of its offspring is important to prevent species extinction. Foam nest as a biosurfactant structure plays a crucial role as egg protection through major protein components function. However, studies on the functional proteins of rhacophoridae foam nests are limited. Thus, this study aims to uncover the protein-specific components and functions of the R. reinwardtii foam nest. Additionally, the characteristics of breeding sites, including abiotic factors, were also assessed. Total protein concentration of the R. reinwardtii foam nest was determined to be 747.7 μg/mL …

Distribution Pattern And Abundance Dynamics Of Asian Openbill (Anastomus Oscitans) In Rice Field Throughout Peninsular Malaysia, Badrulhadza Amzah, Rosli Ramli, Noorhidayah Mamat

Turkish Journal of Zoology

The Asian Openbill (Anastomus oscitans) plays a crucial role in rice field ecosystems by preying on invasive apple snails (Pomacea spp.), potentially reducing the reliance on chemical molluscicides. This study investigated the distribution and abundance dynamics of the stork across major rice granaries in Peninsular Malaysia. Surveys were conducted at 111 sampling points within 30 localities across 11 states during five consecutive rice seasons (2022–2024), with bird counts obtained through binoculars and digital photography. Results indicate that storks are highly concentrated on the northern and central west coasts, where rice fields provide abundant foraging opportunities. In the northern regions (Perlis, …

A Singular Case Of Early-Stage Long-Distance Dispersal Of The Smooth Newt, Lissotriton Vulgaris (Linnaeus, 1758) (Amphibia, Caudata), Simone Costa, Francesco Paolo Faraone, Mario Lo Valvo

Turkish Journal of Zoology

To date, the global introduction of alien amphibians and reptiles has likely been facilitated by the expanding plant nursery trade. Here, we report in detail a singular case of unintentional introduction of Lissotriton vulgaris in Sicily. A newt in the final stages of its larval development was found in a private garden pond in north-western Sicily, where aquatic plants from a nursery in Veneto (northeastern Italy) had been introduced two months earlier. The analysis of the mithochondrial markers ND2 and ND4 revealed a shared haplotype between the Sicilian newt and a sample from Treviso, the province of the putative source. …

Thermal Physiology Of The Giant Day Gecko, Phelsuma Grandis, Infinity Alvarez

Masters Theses (Archived)

Ectotherms rely on their environment to regulate and maintain their body temperature. For this reason, environmental fluctuations strongly impact their biology. Lizards are ectotherms that are suitable models to investigate thermal physiology. However, the bulk of this research has been studied using new world Anolis lizards. In this study, the giant day gecko, (P.grandis), native to Madagascar but invasive in Florida, was selected as a model for comparison. In our physiotype of P.grandis we included measurements such as metabolic rates, sprint speed at relevant temperatures, thermal preference, critical thermal minimum, and voluntary thermal maximum. Our findings showed that …

Reproductive Natural History Of The American Grass Mantid, Thesprotia Graminis, Bridget N. Battaglia, Charles Watson

Masters Theses (Archived)

The American grass mantis, Thesprotia graminis, is an understudied mantis native to Texas, including the campus of Texas A&M-SA. Mantids are influential members of ecosystems as a major predator of small insects. Therefore, measuring elements of their natural history, such as maternal investment, timing of oviposition, and fecundity, will add to our understanding of this specie’s ecology in grassland communities. In controlled lab conditions, we measured the mass of every instar, mantids of both sexes, and the masses of oothecas (egg cases) pre- and post-hatch. Interestingly, we found that this species lays multiple, smaller oothecas throughout the reproductive season. …

Multimodal Spatial Proteomic Profiling In Acute Myeloid Leukemia, Christopher P Ly, Ivo Veletic, Christopher D Pacheco, Enes Dasdemir, Fatima Z Jelloul, Sammy Ferri-Borgogno, Akshay V Basi, Javier A Gomez, Jessica L Root, Patrick K Reville, Sonali Jindal, Sreyashi Basu, Padmanee Sharma, Andres E Quesada, Carlos Bueso-Ramos, Taghi Manshouri, Branko Cuglievan, Miriam Garcia, Jared K Burks, Hussein A Abbas

Faculty, Staff and Student Publications

Acute myeloid leukemia (AML) resides in an immune-rich microenvironment, yet, immune-based therapies have faltered in eliciting durable responses. Bridging this paradox requires a comprehensive understanding of leukemic interactions within the bone marrow microenvironment. We optimized a high-throughput tissue-microarray-based pipeline for high-plex spatial immunofluorescence and mass cytometry imaging on a single slide, capturing immune, tumor, and structural components. Using unbiased clustering on the spatial K function, we unveiled the presence of tertiary lymphoid-like aggregates in bone marrow, which we validated using spatial transcriptomics and an independent proteomics approach. We then found validated TLS signatures predictive of outcomes in AML using an …

Engineering Hiv-1 Env Protein To Elucidate In Situ Structural Dynamics Of Env, Narendra Kumar Gonepudi

Biotechnology Theses

The HIV-1 Envelope (Env) glycoprotein trimers undergo structural changes upon interacting with host receptor CD4 and coreceptors (CCR5/CXCR4) for virus entry. As the only surface-exposed viral protein, Env is a key antibody target but evades recognition through structural changes. Studying Env dynamics with respect to the coreceptor binding region (V3 loop) provides insights into virus entry and immune evasion. Fluorescence labeling via genetic code expansion (amber–TAG suppression) offers a minimally invasive approach for fluorescence microscope-based Env dynamics studies. Here, two V3-related dual-amber Env constructs (A135_TAG-P308_TAG, P308_TAG-E395_TAG) were generated by incorporating two non-canonical …

A Fundamentally New Direction In Embolization Using Reactive Chemistry In A Swine Model, Erik Cressman, Danielle Stolley, Shubhneet Warar, Natalie W Fowlkes, David Fuentes

Faculty, Staff and Student Publications

Liver cancer carries a poor prognosis and incidence continues to increase. The main therapy for unresectable disease > 3 cm in diameter is Transarterial Chemoembolization. Unfortunately, overall survival for these patients has improved little in the past two decades. To address this, we propose a new approach using a chemical reaction in situ. We report here our results in a pilot study using a swine model. Domestic swine (n = 3) were treated in the liver with dichloroacetic anhydride in ethiodized oil. CT imaging was followed 24 h after the procedure by necropsy, histopathology, and mass spectrometry imaging. Animals tolerated the …

Sequence Conservation Of Suppressor Of Ikk Epsilon Phosphorylation Sites, Kaydence M. Isaacs

Undergraduate Honors Theses

Suppressor of IKK epsilon (SIKE) is a protein that is implicated in immune response signaling pathways. SIKE interaction networks suggest roles in cell motility and macromolecular complexes mediating kinase/phosphatase activity. In this project, we aim to better understand the function of SIKE by analyzing amino acid sequences across different species. In human SIKE, viral infection leads to phosphorylation of SIKE at defined serine residues. Comparing SIKE sequences, and specifically these phosphorylation sites, allows us to discover its ancestral connections to innate immune function. This has particular applications in bridging the evolutionary gap between fungi and metazoa SIKE sequences. Multiple sequence …

Mate Choice And Movement Ecology Of Plegadis Ibis In Louisiana, Ryan T. Klutts

LSU Master's Theses

In 1817, George Ord documented the first North American records of Glossy Ibis (Plegadis falcinellus), a species native to the Old World. Over the next 200 years, Glossy Ibis expanded its breeding range to include the Atlantic coast to southernmost Florida and thence up the Gulf coast to eastern Texas. Forty-five to 75 years ago, its range expansion brought it into secondary contact with White-faced Ibis (P. chihi) in Louisiana, a native species whose breeding range includes freshwater wetlands in Louisiana and eastern Texas. Hybridization between the two species resulted in a large hybrid zone in southern Louisiana, providing an …

Development And Evaluation Of A Simple Human Body Link Model Considering The Degrees-Of-Freedom Of Shoulders, Mizuki Takeda, Yuki Saito, Kaiji Sato

Progress in Scale Modeling, an International Journal

Modeling of the human body is widely utilized in the field of human–robot interaction, warranting the development of a simple model to measure and recognize the human body movements. To this end, a two-dimensional (2D) human body link model in the sagittal plane has been used to represent the human body with rotating joints and links connecting these joints. The joint positions can be determined by using the coordinates of a limited number of points on the links and estimated using a few sensor outputs when the links are of constant length. However, models with constant link lengths may result …

An Examination Of The Effect Of Cloth Material On The Efficiency And Success Of Tick Dragging Protocol In Lynchburg Va., Hyden Draughon

Undergraduate Theses and Capstone Projects

Ticks serve as a major vector of arthropod-borne pathogens that could affect human populations. Ixodes scapularis, Amblyomma americanum, Dermacentor variabilis, and Haemaphysalis longicornis populations have been commonly reported in the state of Virginia, and can carry pathogens potentially fatal to humans. I. scapularis serves as a vector of Borrelia burgdorferi (the bacterium that causes Lyme disease), A. americanum has been found to carry Ehrlichia chaffeensis (the bacterium that causes Human Monocytic Ehrlichiosis), D. variabilis can carry Rickettsia rickettsii (the bacterium that causes Rocky Mountain Spotted Fever), and H. longicornis has been found to transmit protozoan Theileria orientalis to livestock. Over …

Pollinator Plant Communities Within Restored Montane Longleaf Pine Ecosystems, Hanen Van Rossem

Master's Theses

Historically the fire-dependent and biodiverse longleaf pine (Pinus palustris) ecosystem was the dominant ecosystem of the Southeastern US. This ecosystem’s range was massively reduced due to land conversion and fire exclusion, causing the decline of many native species. Efforts to restore and protect longleaf pine stands are now ongoing with the goal of expanding habitat and refuge for threatened species. Differences in restoration practices and prior land use may influence the extent to which restored habitat patches can support pollinators and their plants. This study compared pollinator plant biodiversity between restored neighboring montane longleaf pine stands that differed in …

Observing The Prevalence Of Wolbachia Found In Tick Species From The Central Virginia Region, Madison Hoover

Undergraduate Theses and Capstone Projects

Research has found that ticks are considered the second highest global vector of disease. Ticks can serve as a vector for pathogens such as Rickettsia rickettsii (Rocky Mountain Spotted Fever), Borrelia burgdorferi (Lyme Disease), Borrelia miyamotoi (B. miyamotoi disease) and Borrelia hermsii (tick-borne relapsing fever). Tick species such as Dermacentor variabilis (American Dog ticks), Amblyomma maculatum (Gulf Coast ticks), Amblyomma americanum (Lone Star ticks), Ixodes scapulari (Black legged ticks), and Ixodes affinis can be found within the southeastern Virginia region. Arthropod hosts that possess Wolbachia can have their reproduction negatively impacted through methods such as Parthenogenesis, Male Killing, Feminization, and …

The State Of Municipal Scale Highest Use Urban Wood Reclamation Projects, Bradley C. Almond

Graduate Liberal Studies Theses and Dissertations

Millions of urban trees are downed annually for various reasons, such as storms, disease, or development. We are all witnesses to the loss of trees as we see the piles of woody waste assembled on the curbside, ready for public works pickup. Today, most urban wood waste ends up in landfills, mulching/chipping facilities, or firewood production. Each of these alternatives results in the release of sequestered carbon back into the atmosphere.

The initial research led to successful diversion from landfills to mulch and firewood operations. Then, the research shifted to converting urban wood waste for its best use, which outlined …

Sex, Skulls, And Selection: An Exploration Of Blakely Island's Deer Population And Their Ecology Through Genetic Sex Differentiation Of Juvenile Crania, Blair P. Graves

Honors Projects

As an isolated landmass with no natural predators, Blakely Island serves as an effective study site for the study of evolutionary factors relating to insular populations of large mammals. A disparity in the adult sex ratio of local deer has been observed, but the demographics of juveniles must still be ascertained through genetic methods. This study aims to further research concerning the development of a replicable and non-toxic procedure through which undergraduate students can identify the sex of numerous juvenile deer crania. Specifically, differing decalcification lengths, DNA extraction kit methods, and amelogenin primer sets were evaluated for relative success in …

Endophenotype-Informed Association Analyses For Liver Fat Accumulation And Metabolic Dysfunction In The Fels Longitudinal Study, Ariana L. Garza, John Blangero, Miryoung Lee, Cici X. Bauer, Stefan A. Czerwinski, Audrey Choh

School of Medicine Publications

The identification of causal genomic regions for liver fat accumulation in the context of metabolic dysfunction remains a challenging goal. This study aimed to identify potential endophenotypes for liver fat content and employ them in bivariate linkage searches for pleiotropic genetic regions where targeted association analysis is more likely to reveal significant variants. Multiple metabolic risk and adiposity distribution traits were assessed using the endophenotype ranking value. The top-ranked endophenotypes were then used in a bivariate linkage analysis, paired with liver fat content. Quantitative trait loci (QTLs) identified as significant or suggestive were targeted for measured genotype association analyses. The …

Invertebrate Communities Associated With Three Early Phases Of A Prairie Restoration Project, Tracy R. Evans, Meredith J. Mahoney, E. D. Cashatt, Bryon W. Cross, Geert R. De Snoo, C. J.M. Musters

The Great Lakes Entomologist

While specific invertebrate groups have been studied in prairie restorations, there are few studies that look at terrestrial invertebrate assemblages. We surveyed invertebrates in three phases of plant restoration that were part of a larger restoration project. This cross-sectional study of invertebrate recovery at two, four and five years post-restoration shows there was no overall difference in invertebrate taxa richness and diversity between restoration phases. Overall abundance was greatest in the most recently restored area. Richness, diversity and abundance of six functional groups did not differ. The conclusion is that all phases are still characterized by pioneer invertebrate assemblages, and …

Stress-Related Phenotypic Differentiation Identified By Motivational Behaviors In Male Mice, Renee A. Brummels

Honors Thesis

Social stress substantially contributes to psychological disorders, including anxiety, depression, and post-traumatic stress disorder. Recognizing these disorders affect millions, it is essential to understand social stress’s impacts on behavior and how these behaviors vary among affected populations. We address these questions through a social defeat/avoidance paradigm, the Stress-Alternatives Model (SAM), which demonstrates defeat (Stay) and avoidance (Escape) responses across species, including fish, rats, hamsters, and mice. Avoidance of social conflict in the SAM is possible by utilizing escape routes for smaller test mice during aggressive interactions. Additionally, measurements of SAM motivational behaviors, like time near and nose pokes into escape …

Evaluating The Efficacy Of Functional Feed Additives In Broilers With Or Without A Live Coccidiosis Vaccine Challenge, Dalton Gerard Dennehy

Theses and Dissertations

Functional feed additives, such as probiotics, prebiotics, and phytogenics, have seen increased usage in commercial poultry production due to their ability to improve growth performance, meat yield, and overall health status. Therefore, the objective of this research was to evaluate the efficacy of functional feed additives in broilers with or without an enteric challenge induced via a live coccidiosis vaccine (LCV). In the first study (Chapter II), broilers were raised on used litter without an LCV challenge and fed varying levels of a multi-strain Bacillus-based probiotic in the starter phase (1x or 2x dose). Reduced performance was observed in early …

Zn–Assisted Synthesis Of M (Mn/Fe/Co/Ni)-N-C Catalysts For Multifunctional Electrochemical Activity, Kemila A. Chaudhary

Electronic Theses & Dissertations

The design and development of atomically dispersed M-N-C catalysts (metal (M) supported on an nitrogen-carbon (NC) matrix with high multifunctional electrocatalytic performance is desirable but proved to be very challenging. Herein, we synthesized M-N-C catalysts (M = Fe, Co, Mn, and Ni) using Zn-assisted high temperature treatment and characterized using various techniques. The prepared catalysts were tested for their electrocatalytic performance towards oxygen and hydrogen evolution reaction (OER and HER) as well as oxygen reduction reaction (ORR) in alkaline media. The results indicated that Mn-N-C catalyst showed higher performance towards both the ORR (E_1/2 = 0.90 V) and …

Analyzing Ballast Water Treatments, Invasive Species, And Pathogens, And A Decade-Long Analysis On The San Francisco And Baltimore Ports, Jasmin Ibarra-Cortes

Master's Projects and Capstones

Installation of advanced technologies to treat ballast water on ships is necessary to meet current ballast water management standards and reduce the secondary spread of invasive species during intracoastal voyages. This research includes a literature review on non-native aquatic species, particularly diapausing eggs, and available treatment methods for installation. A comparative analysis from 2014 - 2024 on bulker, tanker, and container vessels arriving coastwise to the ports of San Francisco and Baltimore was performed to evaluate treatment installation trends, traffic patterns, and the effectiveness of treatment(s) on targeting diapausing eggs. Use of ultraviolet (UV) radiation combined with filtration has increased …