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Mechanistic Determination Of Host Environmental Impacts On Shigella Virulence, Nicholas E. Dickenson

Funded Research Records

No abstract provided.

Transcriptomic And Genomic Insights Into Nutrient Stress Responses And Subgenome Evolution In Chenopodium, Ashley Kathleen Marcheschi

Theses and Dissertations

Chenopodium is a diverse genus of nutritionally and ecologically important species in the Amaranthaceae family. This thesis investigates two outstanding questions in the genus: how Chenopodium quinoa responds transcriptionally to nutrient deficiency and how Australian Chenopodium species are related through their subgenomic ancestry and evolutionary history. First, we characterized transcriptomic responses of C. quinoa to deficiencies of twelve essential macro- and micronutrients across leaf and root tissues using RNA sequencing. Leaves showed the strongest responses under nitrogen, potassium, magnesium, and zinc deficiency, while roots responded more evenly across conditions. Recurring responses included suppression of photosynthesis, remodeling of translational machinery, reactive …

Nitrogen Management Strategies For Specialty Tea Production In Louisiana: Rate, Source Type, And Nutrient Dynamics, Autumn D. Hilderbrand

LSU Master's Theses

Tea (Camellia sinensis L.) is an emerging specialty crop in Louisiana and the southeastern United States; however, region-specific nitrogen (N) management recommendations remain limited. This research evaluated N fertilizer source, application rate, and nutrient leaching to identify management strategies that improve nitrogen use efficiency (NUE) and environmental sustainability during tea establishment.

Three complementary studies evaluated N source replacement, application rate, and fertilizer source effects on nutrient retention and movement. The first study evaluated the replacement of urea ammonium sulfate (UAS) with blood meal (BM) while maintaining a constant annual N application rate. Fertilizer replacement did not significantly affect leaf …

Deciphering The Potential Of Monopterus Albus Protein Hydrolysate As A Therapeutic Candidate Against Cervical Cancer By Integrating Content Analysis, Network Pharmacology, And Molecular Docking, Okid Parama Astirin, Widya Mega Rahmawati, Elisa Herawati, Tetri Widiyani, Lili Pandan Sari, Sherly Octaviana

Karbala International Journal of Modern Science

Cervical cancer has a high incidence rate in women, making the development of cancer drugs increasingly urgent. Asian swamp eel protein hydrolysate shows great promise as an anticancer candidate. This study aimed to reveal the potential of Asian swamp eel protein hydrolysate as an anticancer candidate in the cervix. Asian swamp eel protein hydrolysate was produced by hydrolyzing flesh with the enzyme alcalase. Compounds and peptides were identified using LC-HRMS. These compounds and peptides were analyzed using network pharmacology, gene ontology, and molecular docking. The results identified 153 endogenous compounds, including fatty acids and peptides. The key proteins targeted by …

A Comparative Expression Analysis Of Selected Genes Involved In Secondary Metabolites Biosynthesis Among Three Alfalfa Cultivars Grown In Iraq, Izdehar Yahia Obaid, Bushra M. J. Alwash

Al-Bahir

Because of its abundance in proteins, vital amino acids, vitamins, and minerals that promote balanced nutrition, Medicago sativa L., also known as alfalfa, is regarded as a nutritionally excellent forage crop. In addition to its nutritional value, alfalfa produces a range of bioactive secondary metabolites, including flavonoids, alkaloids, and phenolic acids, further supporting its use in medicinal and nutritional applications. Three alfalfa cultivars grown in Iraq were examined for gene expression levels of the primary genes involved in secondary metabolite biosynthesis (PAL, COMT, CHS, and OMT). Among these cultivars are Victoria (VC), Green Gold (GC), and a local cultivar (LC). …

Nonmarine Ostracods Of Northern Cyprus: Diversity, Ecology, And Global Island Comparisons, Ahmet Özdi̇lek, Okan Külköylüoğlu

Turkish Journal of Zoology

There is a notable paucity of detailed information regarding the distribution and ecological characteristics of nonmarine Ostracoda in Northern Cyprus. Furthermore, a comprehensive assessment of their distribution across islands in the Northern and Southern Hemispheres is incomplete. To advance our understanding of ostracod diversity, distribution, and ecological preferences, a total of 79 aquatic sites in Northern Cyprus were randomly sampled between 18 May and 12 August 2022. A total of 64 ostracod taxa were identified, comprising 28 living species and 36 subfossils, with 18 species representing new records for the island. Additionally, five ostracod species were reported for the first …

Dietary Stability Of The Eurasian Beaver Revealed By Hair Stable Isotopes, Linas Balčiauskas, Rasa Vaitkevičiūtė Koklevičienė, Andrius Garbaras, Inga Garbarienė, Laima Balčiauskienė

Turkish Journal of Zoology

The Eurasian beaver (Castor fiber) is a keystone ecosystem engineer whose expanding populations increasingly occupy agricultural landscapes. Hair stable  isotope analysis was applied to reconstruct assimilated diet in 56 legally  hunted beavers in Lithuania in 2024–2025. Stable carbon isotope values were tightly  clustered (–25.53 ± 0.10‰ SE), while those for nitrogen showed greater variability (5.38 ± 0.20‰ SE), indicating limited interindividual dietary differentiation.  Generalized linear models revealed no significant effects of sex, year, or month, and  age-related differences were limited to the youngest individuals. Comparison with  published Polish data showed no significant differences in mean isotope values.  Overall, the results …

From Introduction To Biomass Dominance: The Invasive Fish Striped Piggy (Pomadasys Stridens) Reshaping Demersal Assemblages In The Eastern Mediterranean, Mehmet Cengi̇z Deval

Turkish Journal of Zoology

Rapid increases in the abundance and biomass of nonindigenous species have the potential to profoundly reshape demersal fish assemblages in the Eastern Mediterranean Sea, yet quantitative evidence from long-term standardized surveys remains scarce. In the present study, temporal changes in biomass dynamics and community structure were assessed using fishery-independent trawl surveys conducted on the continental shelf of Antalya Bay (GSA 24) during two periods a decade apart (2009–2010 and 2020–2021), with particular focus on the Lessepsian striped piggy Pomadasys stridens. Based on the second survey, in which both daytime and nocturnal sampling were conducted, the biomass index (BI) differed significantly …

Comparative Cytogenetics Of Four Phelsuma Species: Insights Into Chromosome Evolution In Malagasy Gekkonidae, Marcello Mezzasalma, Gaetano Odierna, Fabio Maria Guarino, Elvira Brunelli

Turkish Journal of Zoology

Karyotype diversification and chromosome mutations (or macromutations) such as  inversions, fusions, and fissions represent understudied factors of biological evolution.  We present in this study one of the first experimental cytogenetic analyses  on the Malagasy day geckos of the genus Phelsuma. A molecular analysis was  performed using a trait of the mitochondrial 12S and a comparative chromosome  study with traditional Giemsa coloration, Ag-NOR staining and sequential C-banding  (C-banding + Giemsa + fluorochromes) on nine individuals of Phelsuma from different  localities. The molecular analysis allowed unambiguous identification of  three species (P. lineata, P. laticauda, and P. standingi), while two additional samples  likely …

Resource Assessment Report 9: South Coast Crustacean Resource 2045-25 Assessment, Emma-Jade Tuffley, Simon De Lestang

Resource Assessment Reports

The South Coast Crustacean Resource (SCCR) comprises southern rock lobster (Jasus edwardsii), western rock lobster (Panulirus cygnus), crystal crab (Chaceon albus), giant crab (Pseudocarcinus gigas), and champagne crab (Hypothalassia acerba). The resource is accessed primarily by the South Coast Crustacean Managed Fishery (SCCMF), which operates between Augusta in the west and the South Australian border in the east. Since the 2022–23 season, the SCCMF has been managed under an Individual Transferable Quota (ITQ) system with Total Allowable Commercial Catches (TACs) set for four quota zones. Recreational fishing retains a small quantity of rock lobster only.

During the 2024–25 fishing season, …

Fly Density At Trash Disposal Sites As An Environmental Bioindicator Using Fly Grill, Fly Spot Card, And Fly Sticky Paper, Tri Ilmanisa, Susi Soviana, Supriyono Supriyono

Journal of Environmental Science and Sustainable Development

Flies are synanthropic insects of public health importance commonly found at trash disposal sites (TDS). Poor waste management promotes fly breeding, increases the risk of disease transmission, reflects low sanitation, and serves as an environmental bioindicator. Studies on flies at TDS in university campus environments in West Java, Indonesia, remain limited, particularly with respect to species composition, fly density, and the use of different density measurement methods. Fly density monitoring in Indonesia still relies on the fly grill method under Ministry of Health Regulation No. 2 of 2023, although alternative tools, such as fly spot cards and fly sticky paper …

Determinants Of Home Composting Behavior In Supporting Sustainable Agriculture Among Smallholder Farmers: A Case Study In The Thai Nguyen Province Of Vietnam, Bac Ho Van, Hien Vu Thi, Xinh Ho Luong

Journal of Environmental Science and Sustainable Development

Home composting is a practical and sustainable approach for the management of organic waste generated in the home and agricultural production that contributes to both organic waste management and soil fertility enhancement. In the northern mountainous regions of Vietnam, smallholder farmers face limited adoption of sustainable waste management practices due to behavioral constraints, limited technical knowledge, and resource constraints affecting agricultural productivity.  This study applies and extends the Theory of Planned Behavior (TPB) by integrating behavioral and contextual determinants to examine home composting adoption among smallholder farmers in rural Vietnam. Principal Component Analysis (PCA) was used to reduce and structure …

Harmful Algal Blooms: Risks For Food In Utah, Jose Brandao, Sarah Erwin, Stephanie Vaughn, Clare Entwistle

All Current Publications

Harmful algal blooms (HABs) are a problem because they can produce toxins that make water unsafe for people, animals, and the environment. In recent years, HABs have emerged as a growing concern in freshwater systems throughout Utah, including irrigation canals, reservoirs, and livestock ponds. HABs in freshwater are caused by cyanobacteria, also called blue-green algae. These microorganisms can release dangerous toxins that can harm swimmers, pets, and the food supply. Unlike foodborne pathogens, these toxins cannot be removed by boiling, cooking, or washing the food. Therefore, regular monitoring is essential to detect HABs early and reduce exposure risks. This fact …

Food Systems Transformation Would Reshape Global Agriculture, Matthew Gibson, Marina Sundiang, Daniel Mason-D’Croz, Thais Diniz Oliveira, Felicitas Beier, Lauren Benavidez-Brouk, Astrid Bos, Maksym Chepeliev, Jonathan Doelman, Shahnila Dunston, Shinichiro Fujimori, Tomoko Hasegawa, Petr Havlik, Jordan Hristov, Jonas Jägermeyr, Marta Kozicka, Marijke Kuiper, Page Kyle, Thijs De Lange, Benjamin Leon Bodirsky, Hermann Lotze-Campen, Hermen Luchtenbelt, David Meng-Chuen Chen, Abhijeet Mishra, Christoph Müller, Gerald Nelson, Amanda Palazzo, Ignacio Perez Dominguez, Alexander Popp, Ronald Sands, Marco Springman, Elke Stehfest, Timothy B. Sulser, Kiyoshi Takahashi, Gianmaria Tassinari, Ferike Thom, Philip Thornton, Kazuaki Tsuchiya, Willem-Jan Van Zeist, Hans Van Meijl, Dominique Van Der Mensbrugghe, Detlef Van Vuuren, Hannah H.E. Van Zanten, Isabelle Weindl, Keith Wiebe, Xin Zhao, Mario Herrero

Department of Agricultural Economics Faculty Publications

Food systems are a major contributor to exceeding planetary boundaries1,2,3 and poor quality diets are a key mortality risk globally4. Projected population and income growth could exacerbate these challenges5. In response, there are calls for transformation towards healthy and sustainable food systems6,7,8. However, the scale and distribution of the impacts of this transformation on agriculture are underexplored. Here we show that, by 2050, the transformation of food systems towards healthy diets (adoption of the EAT–Lancet reference diet), improved productivity and halving of food waste results in a fundamental restructuring of global agriculture, aspects of which break with historical trends. Scenario …

Aquaponics: Farming Fish And Growing Greens For Grades 9–12, Amy M. Shambach,, Rebecca M. Ward, J. Stuart Carlton, Kwamena K. Quagrainie, Tomas O. Höök

Purdue University Press Books

Aquaponics: Farming Fish and Growing Greens for Grades 9–12 teaches STEM-related course material through aquaponics, a water-based agricultural system that combines aquaculture (fish production) and hydroponics (soilless vegetable production) systems. This curriculum is aligned with Next Generation Science Standards and designed to be used with an onsite aquaponics system. Topics include an introduction to aquaculture, fundamental parts of an aquaponics system, the nitrogen cycle, water quality, population dynamics, our modern food system, and more. The ten lessons presented build on each other and are intended to be delivered in sequential order. Alternatively, lessons may also be utilized as stand-alone units …

The Tagmatized Echinoderm, Richard L. Turner

Ocean Engineering and Marine Sciences Faculty Publications

Synopsis Tagmosis is a derived condition of metamerism in annelids, arthropods, and chordates in which groups of adjacent segments are modified to perform specific functions. Examples are the clitellum of earthworms, the carapace of lobsters, and the sacrum of tetrapods, to mention a few. The argument is advanced here that examples of tagmosis are not hard to find among echinoderms, a fourth major group of metameric animals; but the degree of tagmosis is weak in most cases. The first few segments of the axial skeleton are often conjoined as a perioral tagma (e.g., the jaws and other parts of the …

Sophisticated Song: Exploring The Evolution And Ontogeny Of Large Repertoires And Syntax Usage In The Bachman’S Sparrow (Peucaea Aestivalis), Heather Jean Wolverton

Electronic Theses and Dissertations

While humans have the most complex vocal communication system, many of the features that make human language so intricate can be found in other taxa. One building block of language commonly studied in animal communication is syntax, or the organization of vocalizations. Birds, wolves, and cetaceans all display complex vocal signaling that utilizes syntax. Understanding how syntax functions in different taxa can help illuminate the evolution and development of human language and the role it plays in social cognition. The Bachman’s sparrow (Peucaea aestivalis) is a species of songbird that utilizes syntax in the form of preferred transitions …

Euscorpius Emae Sp. N. (Scorpiones: Euscorpiidae), A New Scorpion Species From Montenegro, František Kovařík

Euscorpius

A new species Euscorpius emae sp. n. (Scorpiones: Euscorpiidae) from Montenegro is described, fully complemented with color photographs. E. emae sp. n. is morphologically unique by yellow to orange color, very narrow metasoma and enlarged chela. Pedipalp patella external trichobothria numbers are 4eb, 4eb_a, 2esb, 4em, 4est, 5et, and ventral aspect of patella with 9 trichobothria.

Measuring And Mapping Spatial Distributions Of Soil Lead Concentrations Along Chicago Parkways: West Ridge And Near South Side, Alyssa M. Kain

DePaul Discoveries

Lead is a heavy metal that can be found in every part of our planet. Human activities like the extraction of fossil fuels and degradation of construction materials can release lead into the environment, where it travels and accumulates in places like our soil or water. Despite efforts to lower the use of lead-based materials within the last fifty years, lead contamination remains as a threat to public health and safety. Elevated blood lead levels are known to cause a variety of health issues particularly for young children and pregnant women. This study aims to measure, map, and analyze the …

From Landfill To Ladle: Using Open Lca To Calculate Food Diversion Impacts, Samantha Rodriguez

DePaul Discoveries

Food waste contributes to climate change because discarded food results in wasting embodied carbon from producing food. In addition to wasting embodied carbon, food that ends up in landfills emits methane, a powerful greenhouse gas that contributes to climate change. This life cycle assessment quantifies the carbon equivalent footprint of food donations from Costco to the Seton Soup Kitchen using OpenLCA. Two functional units were analyzed in this study. The first functional unit is one meal consisting of 500 grams of donated food that would otherwise be landfilled served to a Seton Soup Kitchen patron during one meal service. The …

Fish Tissue Digestion And Microplastic Polymer Identification Protocol Using Open-Source Ftir Database, Shawn L. Kissinger, Vick-Ariel Privert, Jason Bystriansky, Kyle A. Grice

DePaul Discoveries

Microplastic (MP) contamination in aquatic ecosystems poses significant concerns for environmental and public health, as seafood represents a critical food source worldwide. Despite increasing evidence of MP presence in marine organisms, efficient and accessible detection methods remain essential for characterizing contamination patterns and informing regulatory frameworks. This study extracted MPs from brain, gill, intestine, liver, and muscle tissues of gilt-head bream (Sparus aurata) and European sea bass (Dicentrarchus labrax), two commercially important species from the Gulf of Cádiz, Spain, using a NaOH–HNO₃ chemical digestion protocol. Isolated particles were characterized by Fourier Transform Infrared (FTIR) spectroscopy, with …

Vertebrate Diversity In Cave Systems Of Colombia: An Approach Based On Environmental Dna Metabarcoding Analysis, Rita Daniela Martinelli Marín, Carlos Andres Lasso, Francesco Sauro, Susana Josefina Caballero

International Journal of Speleology

There is currently limited knowledge of the biological communities inhabiting cave ecosystems in South America. This study examines the vertebrate community composition of 21 caves across diverse subterranean ecosystems in Colombia using environmental DNA (eDNA) analysis. Water was collected from water bodies inside caves and subterranean systems in six of the eight speleological regions of Colombia in eight departments. Water was filtered manually through a 0.8 m pore size filter and preserved with Longmire solution. A 170-base pair (bp) fragment of the 12s mitochondrial gene specific for vertebrate identification was amplified by PCR and sequenced by Illumina (metabarcoding). Data corresponding …

Campus Food Recovery: Balancing Sustainability And Student Needs, Scott T. Taylor Jr., Wenhao Zhang, Robin B. Dipietro, Mary Stein, Junehee Kwon

ICHRIE Research Reports

The purpose of this study was to assess the impact of a food recovery program at a large university on food waste reduction and food insecurity mitigation. The primary goal of the food recovery program was two-fold: to help provide ready-to-eat meals for students facing food insecurity and to help the campus food service provider minimize post-production food waste. Thus, food was recovered from multiple dining outlets on a large university campus in the southeast United States. To ensure a valid comparison between 2022-2023 and 2023-2024 academic years, a 3-month period during the spring semesters in 2023 and 2024 was …

Influence Of A New Nanoensemble Of Graphene Oxide And Indole-3-Acetic Acid On The Morphophysiological, Biochemical, And Ultrastructural Characteristics Of Upland Cotton (Gossypium Hirsutum L.), Nurlan Amrahov, Ulviyya Hasanova, Aliyeva Gunel, Aghazada Goncha, Fuad Rzayev, Eldar Gasimov, Aliyeva Solmaz, Lala Gahramanli, Elvin Ibrahimli, Ruhangiz Mammadova, Zarema Gakhramanova, Cem Bayram, Goncha Eyvazova, Si̇bel Hasanova, Ziyaddin Mammadov

Turkish Journal of Botany

​The exogenous application of phytohormones plays a crucial role in the activation of adaptive mechanisms in plants under both normal and stress conditions. Therefore, the present study investigates the synthesis, characterization, and application of nanoensembles based on indole-3-acetic acid (IAA) and graphene oxide (GO) nanolayers. The surface of GO synthesized by the modified Hummer method was noncovalently functionalized with IAA molecules. The structure and morphological properties of the prepared materials were analyzed by Fourier transform infrared spectroscopy, X-ray diffraction, UV-Vis spectroscopy, and transmission electron microscopy. The IAA and IAA+GO nanoensemble enhanced the morphological parameters, lateral root formation, catalase and peroxidase …

Effects Of Calcium And Magnesium Ions On Wheat (Triticum Aestivum) Chromosome Structure Visualized Using Light And Scanning Elec​Tron Microscopes, Andi Salamah, Fitri Amalia Nurchasanah, Vycka Fikriyani Fairuz, Astari Dwiranti

Turkish Journal of Botany

Divalent cations, particularly calcium (Ca2+) and magnesium (Mg2+), are essential for maintaining chromosomal architecture, yet their roles in plants remain poorly characterized. This study investigated the effects of Ca2+ and Mg2+ on the chromosomal structure of wheat (Triticum aestivum, 2n = 6x = 42), a widely used model in plant cytogenetics. Root-tip chromosomes were isolated enzymatically and treated with BAPTA (a Ca2+-specific chelator), EDTA (a broad cation chelator), and buffer solutions containing either 5 mM Mg2+ (XBE5) or no Mg2+ (XBE). Chromosomes were stained with aceto-orcein for light microscopy and processed for scanning electron microscopy (SEM). Microscopic observations revealed that …

Systematic Implications Of Seed Morphology In Oxytropis (Galegeae: Fabaceae) From Pakistan, Amjad Khan, Amir Sultan, Raees Khan, Rozina Rozina, Shahab Ali, Ali Bagheri, Rifat Ullah Khan, Abdul Samad Mumtaz, Tariq Ullah, Ghalia Saleem Aljeddani, Hasil Khan

Turkish Journal of Botany

Oxytropis is a taxonomically challenging genus within the tribe Galegeae of the family Fabaceae. Despite its systematic importance, the seed morphology of Oxytropis has been poorly investigated. In the present study, we examined the seed morphology of 18 Oxytropis species representing 10 sections from the Pakistan, with the aim of evaluating the diagnostic value of seed traits using both light and scanning electron microscopy. The current investigation revealed two distinct seed shapes, namely cordiform and prolonged reniform, across the studied taxa. Seed length ranged from 1.75 mm in O. crassiuscula to 2.3 mm in O. duthieana, while seed width varied …

Optimized Immunoprecipitation Identifies Candidate Proteins Associated With Eyespot Protein Eye2 In Chlamydomonas Reinhardtii ​, Esra Öztürk, Telsa Mittelmeier, Carol Dieckmann, Atakan Sukatar

Turkish Journal of Botany

​The EYE2 protein is essential for eyespot assembly and localization in Chlamydomonas reinhardtii, yet the molecular mechanisms underlying its function remain poorly understood. In this study, we present a systematic evaluation and optimization of an immunoprecipitation (IP)-based workflow for isolating EYE2 and its associated protein complexes. Key methodological variables including strain selection, flagella removal, and detergent concentration were compared using western blotting to determine optimal extraction conditions. The combination of the cell wall-deficient cw15 strain, 4% digitonin extraction, and pH shock-mediated deflagellation significantly enhanced IP specificity and reproducibility. Using this optimized protocol, EYE2 and its potential interaction partners were isolated …

Longitudinal Patterns In Stygobiont Distribution In The Hyporheic Zone Of The Karst Spring-Fed San Marcos River, Texas, Usa, Kenneth Sparks, Benjamin F. Schwartz, Safra Altman, Kathryn E. Perez, Zoey B. Chanin, Caroline Mierzejewski, Benjamin T. Hutchins

School of Integrative Biological & Chemical Sciences Faculty Publications

Groundwater-obligate taxa (stygobionts) exhibit variable degrees of habitat specialization, ranging from those restricted to single micro-habitats to generalists occurring in a broad range of habitat types. The karstic Edwards Aquifer is the most biodiverse and well-studied groundwater habitat in the continental United States, but some Edwards Aquifer-associated species also occupy the hyporheic zone of rivers downstream from karst. The goals of this research were to 1) assess the potential of the off-karst hyporheic zone as habitat for ‘karst’ species and 2) to determine how stygobiont richness, diversity, and abundance related to distance from karst in the hyporheic zone of a …

What Are Vestigial Structures? Evidence For Evolution Explained, Ryan Bebej

University Faculty Publications and Creative Works

Evolution wasn’t something we talked about very much in my home or church when I was growing up.

Yet somehow, I came to believe that evolution wasn’t compatible with Christian faith. At the time that seemed okay, because I had heard that the evidence for evolution wasn’t very strong anyway.

That all began to change when I started studying biology in college. In different classes, I encountered some of the compelling evidence for evolution and common descent.

Vestigial structures were one of the topics that came up often in biology textbooks about these topics.

Today, biologists point to …

Tails From The Isle Of Devils: Two New Records Of Non-Native Invasive Scorpions (Arachnida: Scorpiones) Successfully Intercepted In Bermuda, Including The First Record Of Caraboctonidae, Danniella Sherwood, Mark Outerbridge, Struan R. Smith, Jenny Gosling, Myles Darrell

Euscorpius

Hadruroides sp. (Scorpiones: Caraboctonidae) is newly recorded as a successfully intercepted non-native invasive species in Bermuda, based on examination of a desiccated and damaged immature female specimen. A second record of an intercepted Centruroides gracilis (Latreille, 1804) (Scorpiones: Buthidae) is reported based on examination of an adult male.