Digital Commons Network^™

Darkling Beetle, Jasmine M. Roncevic

PANDION: The Osprey Journal of Research and Ideas

Darkling beetles (Tenebrio molitor) are holometabolic insects. Darkling beetle is the common name of the large family of beetles Tenebrionidae which has more than 20,000 species. The T. molitor species gets its name from the yellowish appearance of the larvae. During its lifespan, a darkling beetle experiences a complete metamorphosis in four distinct stages: Egg, larva, pupa, and adult. The eggs hatch within 4 to 19 days after the female oviposits. It takes about 3 – 4 months for an egg to develop into an adult, or the beetle stage.

During the adult stage, the beetles are initially whitish and …

Horseshoe Crabs, Jessie M. Roncevic

PANDION: The Osprey Journal of Research and Ideas

Horseshoe crabs (Limulus polyphemus) are fascinating animals known as “living fossils.” Older than dinosaurs, horseshoe crabs are arthropods, closely related to spiders and scorpions. Many shorebirds, including red knot, depend on the eggs of horseshoe crabs during migration. Horseshoe crabs are captured and bled alive for their blue blood. Rich in limulus amebocyte lysate (LAL), their blood is used for the Limulus Amebocyte Lysate (LAL) test, which is used worldwide to detect bacterial toxins in pharmaceuticals and medical devices.

Horseshoe crabs have an intricate anatomy, so I spent a lot of time researching it before I started drawing them. When …

Floridians, Michael Anglim-Lindros

PANDION: The Osprey Journal of Research and Ideas

The purpose of this piece is to explore species present in Florida by depicting native species alongside commonly seen non-native ones. I decided to focus on mammals, specifically those I have personally observed while living in North Florida. By illustrating their unadorned skeletal remains, I hope to inspire viewers to consider the similarities, differences, and relationships among these organisms, as well as the lives they lead on shared land.

The species depicted in this piece are (clockwise from middle) Homo sapiens (human) - non-native; Tadarida brasiliensis (Mexican free-tailed bat); Dasypus novemcinctus (nine-banded armadillo); Sciurus niger shermani (Sherman’s fox squirrel); Odocoileus …

Probiotic Intervention In Managing Chronic Stress, Bianca Opdenbosch

PANDION: The Osprey Journal of Research and Ideas

Chronic stress can induce gut dysbiosis which contributes to the dysregulation of the gut-brain axis and leads to anxiety and depressive-like symptoms. The gut-brain axis relies on nervous, immune, and endocrine interactions. Gut dysbiosis, an imbalance within the gut microbiome, disrupts gut-brain communication, impairing gut barrier integrity, inflammation regulation, and hormonal and neurotransmitter production. These gut changes contribute to mood disorders resulting from stress, and thus it is important to implement dietary interventions, like probiotics, to help mitigate these effects. Research highlights the potential of probiotics to act as an intervention to combat stress-induced gut dysbiosis and replenish beneficial bacteria …

Rewilding The Built Environment: Navigating Economic, Political, And Social Barriers To Urban Ecological Restoration, Carly E. Smith

PANDION: The Osprey Journal of Research and Ideas

Urban rewilding offers a nature-based approach to restoring ecological processes in cities while advancing climate resilience, biodiversity, and public well-being. Unlike conventional green infrastructure, rewilding allows ecosystems to develop with minimal intervention, emphasizing succession, complexity, and long-term adaptability. This paper examines the political, economic, and social factors that frame how rewilding is understood and implemented in urban planning. Governmental frameworks often prioritize order, predictability, and short-term results, making it difficult to accommodate the uncertainty and ecological complexity that rewilding requires. Economic models struggle to capture its long-term value, frequently overlooking ecosystem services or reconciling competing land uses. Social perceptions of …

Analysis Of Mct-1 Expression In Mouse Neural Retina In Response To Chronic Inflammation, Ian W. Ronson

PANDION: The Osprey Journal of Research and Ideas

Chronic inflammation is a current public health concern as it is linked to the etiology and symptoms of numerous diseases, for example diabetic retinopathy (DR). In the case of DR, inflammation leads to dysregulation of the blood retina barrier causing retinal hemorrhage and macular edema leading ultimately to irreversible vision loss. MCT-1 is critical for the survival of photoreceptor cells because MCT-1 forms protein complexes with Basigin, a cell-cell adhesion protein, that enables Müller glial cells to efficiently provide lactate as a high energy fuel source. Previous studies have shown chronic inflammation reduces Basigin expression in the retina and that …

Enzymes Of Calendula Officinalis L. As Affected By Foliar Application Of Nano-Nitrogen And Potassium Fertilizers, Under Water Stress Conditions, Aqeel Abdulabbas Alsudani, Qais Hussain Abbas Al-Semmak

Karbala International Journal of Modern Science

Water stress is a major environmental factor that limits the growth and productivity of Calendula officinalis L. To alleviate its negative effects, recent approaches have increasingly focused on nano-fertilizers that enhance plant antioxidant defenses. This study therefore aimed to evaluate the effect of foliar application of nano-nitrogen (0, 2, and 4 mL L⁻¹) and nano-potassium (0, 2, and 4 g L⁻¹) fertilizers under two irrigation regimes (100% and 50% of field capacity) on the activity of key antioxidant enzymes, including catalase (CAT), superoxide dismutase (SOD), and peroxidase (POD). The results revealed that irrigation at 50% field capacity significantly increased CAT, …

Principles Of Environmentally Sustainable Agriculture For Building Resilient And Resource-Efficient Food Systems, Ramazan Çakmakçi, Songül Çakmakçi, Muhammet Fati̇h Çakmakçi

Turkish Journal of Biology

As the demand for greater quantities of higher-quality food grows with population expansion, climate change, urbanization, and unsustainable agricultural practices accelerate the loss of arable land, ultimately threatening agricultural sustainability. Population growth necessitates a transition to nutritious, safe, and healthy food production systems that ensure higher yields, less reduced waste, improved social outcomes, and the integration of economic, social, and environmental sustainability principles. Urgent global challenges such as resource depletion, biodiversity loss, and climate change necessitate the protection of ecosystems and the sustainable use of natural resources. Agricultural systems must enhance food production and supply productivity, strengthen system resilience, and …

Royal Jelly With Ellagic Acid Inhibits The Glycolytic Pathway And Induces Apoptosis Through Multiple Pathways In Colorectal Cancer, Tuğba Kul Köprülü

Turkish Journal of Biology

Background/aim: Developing novel chemotherapeutics with high anticancer efficacy and low toxicity remains a critical challenge in oncology. Natural products have shown promise due to their multitargeted activity and favorable safety profiles. The present study investigates the combined anticancer effects of royal jelly (RJ) and ellagic acid (EA), two potent antioxidants of animal and plant origin.

Materials and methods: Royal jelly (RJ) and ellagic acid (EA) were applied to HT29 (ATCC HTB-38, Human colorectal adenocarcinoma), HCT116 (ATCC CCL-247, Human colorectal carcinoma) and BEAS-2B (ATCC CRL-3588, human bronchial epithelium) cell lines, and their antiproliferative effects were evaluated using a xCELLigence Real-Time Cell …

Differential Modulation Of Cisplatin Efficacy By Montelukast Sodium And Desloratadine In Lung Cancer, Seha Akduman, Büşra Yüksel, Di̇dem Teci̇mel, Ömer Faruk Bayrak, Di̇dem Seven, Fi̇kretti̇n Şahi̇n

Turkish Journal of Biology

Background/aim: Despite advances in treatment, achieving effective and durable responses with chemotherapy remains a significant challenge in lung cancer management. This study investigates the effects of montelukast sodium (MLS) and desloratadine (DES), alone and in combination with cisplatin (CIS), on cell viability, apoptosis, cell cycle distribution, and antioxidant gene expression in A549 and DMS114 lung cancer cell lines.

Materials and methods: Cells were treated with CIS, MLS, DES, and their combinations for 24–72 h. Cell viability was assessed via MTS assay; apoptosis and cell cycle progression were analyzed by flow cytometry. The expression of antioxidant-related genes (GPX4, GSR, GCLC) was …

Microplastic Pollution In Marine Ecosystems: Sources, Impacts, Andstakeholder-Based Solutions, Seren Acarer Arat

Turkish Journal of Biology

Microplastics (MPs) are plastic particles of anthropogenic origin with a size range of 1–5000 μm. Marine MP pollution is increasingly recognized as a significant global environmental challenge. MPs, which enter marine ecosystems from land- and marine-based sources, pose physical, chemical, and biological risks due to the adsorption of various pollutants and the formation of biofilm layers. MPs are found in various organisms from lower to higher trophic levels of the marine food web. The negative effects of MPs on marine organisms depend on their abundance, their characteristics, and the exposure time of organisms to MPs. MPs can adversely affect various …

A Review Of Deep Learning Architectures For Plant Disease Detection​, Yasi̇n Kaya, Ercan Gürsoy

Turkish Journal of Biology

Background/aim: The rapid advancement of deep learning (DL) has revolutionized plant disease detection by enabling highly accurate, image-based diagnostic solutions. This review provides a comprehensive synthesis of DL-based methodologies for plant disease detection, systematically structured around the key stages of the modeling pipeline, encompassing data acquisition, preprocessing, augmentation, classification, detection, segmentation, and deployment.

Materials and methods: The review focuses on evaluating convolutional neural network (CNN) architectures such as VGG, ResNet, EfficientNet, and DenseNet across diverse experimental contexts. Classification strategies are categorized according to their integration of visualization techniques (e.g., saliency maps, Grad-CAM) to enhance model interpretability, emphasizing the pivotal role …

Green Carbon Dots In The Era Of Ai: Sustainable Synthesis, Intelligent Drug Delivery, Advanced Diagnostics, And Bioimaging, Emi̇ne Sezer, Fulden Ulucan Karnak, Si̇nan Akgöl

Turkish Journal of Biology

Background/aim: Green carbon dots (GCDs) are a rapidly developing class of nanomaterials that are revolutionizing various scientific disciplines due to their unique optical properties, low toxicity, and sustainable synthesis. This review offers a comprehensive roadmap for the field, emphasizing the synergy between GCDs and artificial intelligence (AI).

Materials and methods: We begin by detailing the sustainable synthesis of GCDs, highlighting green chemistry principles and the transformative role of AI in optimizing their production. Subsequently, we explore the critical characterization of GCDs, including their structural, optical, and biocompatibility assessment. The core of this study explores the diverse biomedical applications of GCDs, …

Flavonoids And Phenolic Compounds: A Promising Avenue For Neurodegenerative Disease Therapy, Tesli̇me Özge Şahi̇n, Özge Cemali̇, Merve Özdemi̇r, Şeri̇fe Ayten, Duygu Ağagündüz

Turkish Journal of Biology

Background/aim: Neurodegenerative diseases such as Alzheimer’s, Parkinson’s, Huntington’s, and ALS are characterized by a progressive loss of nerve cells, for which no definitive cure currently exists. These conditions share common pathological mechanisms, including chronic neuroinflammation, oxidative stress, protein aggregation, and mitochondrial dysfunction. Flavonoids and other plant-derived phenolic compounds have recently attracted attention for the treatment of such conditions due to their antiinflammatory and antioxidant properties. This review explores the neuroprotective mechanisms of flavonoids and evaluates their potential for the prevention and treatment of neurodegenerative diseases.

Materials and methods: A literature search of the Web of Science, PubMed, and ScienceDirect databases …

Hsa_Circ_0001776 Regulates The Progression Of Acute Myeloid Leukemia Through The Mir-1269b/Pten Axis, Yaoyao Wang, Xiancong Yang, Simin Rong, Xiaoxu Lan, Chenhui Ti, Weimiao Sun, Baohui Yin, Youjie Li, Yunxiao Sun

Turkish Journal of Biology

Background/aim: Acute myeloid leukemia (AML) is a malignant neoplasm arising from bone marrow hematopoietic stem cells. It is a common subtype of childhood leukemia and remains challenging to cure. Emerging evidence suggests that circular RNAs (circRNAs), a class of noncoding RNAs, play key regulatory roles in tumor biology. Among their various functions, circRNAs often act as ‘sponges’ for microRNAs (miRNAs), modulating gene expression posttranscriptionally. This study investigates the functional role and clinical relevance of hsa_circ_0001776 in AML.

Materials and methods: Three AML cell lines and 22 peripheral blood samples were analyzed. Differential expression analysis of circRNAs in a GSE dataset …

Evaluating Sh-Sy5y Cells As A Dopaminergic Neuronal Model: Morphological, Transcriptomic, And Proteomic Insights, Eylül Ece İşlek Camadan, Mehmet Sarihan, Murat Kasap, Gürler Akpinar, Eli̇fcan Koçyi̇ği̇t

Turkish Journal of Biology

Background/aim: The SH-SY5Y neuroblastoma cell line is a popular in vitro model for neurodegenerative disease research, especially Parkinson’s disease (PD) research, but its use is complicated by limitations like the persistence of neuroblastoma-like features, unstable differentiation, mitochondrial dysfunction, and cellular stress. To address these limitations, this study tested a blended, nine-day differentiation protocol that sequentially applied all-trans retinoic acid (RA), brain-derived neurotrophic factor (BDNF), and dibutyryl cyclic adenosine monophosphate (dbcAMP). By evaluating key neuronal, dopaminergic, and PD-related markers, the research aims to determine if these differentiated SH-SY5Y cells are a suitable model for studying PD.

Materials and methods: A blended …

Epac2 Deficiency Compromises Adaptation To Dietary Acidification By Decreasing H+ Transport In The Renal Nephron, Kyrylo Pyrshev, Anna Atamanchuk, Wenli Yang, Mariya Kordysh, Fang Mei, Oleg Zaika, Xiaodong Cheng, Oleh Pochynyuk

Faculty, Staff and Student Publications

Kidneys are central in maintaining acid-base homeostasis by recovering filtered bicarbonate (HCO3-) in the proximal tubule and by secreting H+ in the collecting duct. Here, we demonstrate a critical role of the exchange protein directly activated by cAMP (Epac) signaling, and particularly the Epac2, in governing renal adaptation to dietary acid load. RNAseq analysis of the renal cortical area revealed that Epac1&2 deficiency was associated with changes in gene profile seen in acidosis. Renal expression of Epac2 but not Epac1 was enhanced by acid load. Epac2-/- mice developed a pronounced metabolic acidosis due to the inability to acidify urine in …

Prevalence And Molecular Characterization Of Non-Typhoidal Salmonella In Poultry Of Dar Es Salaam, Tanzania, Tumwi T. Salah, Paulo S. Joseph, Bishop I. Magidanga, Richard S. Mwakapuja, Victor A. Makene

Tanzania Journal of Science

Poultry is one of the common source of non-typhoidal Salmonella and poultry products are the major sources of human and animal infections with the Salmonella. A cross-sectional study was conducted to determine the prevalence of non-typhoidal Salmonella in live commercial and backyard chickens from retail markets and farms in Dar es Salaam city, Tanzania. The study was conducted in four districts; Ubungo, Kinondoni, Temeke and Ilala. A total of 400 chickens (120 broilers, 120 layers and 160 backyard chickens) were tested for Salmonella. Salmonella isolation and identification was carried out using bacteriological standard methods and polymerase chain reaction (PCR) …

Dissecting The Intrinsic And Extrinsic Regulators Of Prostate Cancer Dormancy In The Bone Microenvironment, Mostafa M. Nasr

USF Tampa Graduate Theses and Dissertations

Metastatic disease is the primary driver of cancer-related mortality. In prostate cancer (PCa), patient survival decreases dramatically once the disease spreads to distant organs, with over 80% of metastases occurring in the bone. This dissemination is often followed by a clinically silent period of tumor dormancy that can last for years, creating a critical reservoir of cells poised for lethal relapse. A significant barrier to understanding and targeting this dormant phase has been the lack of robust experimental models. This thesis first addresses this challenge by establishing a novel stress-induced model of PCa dormancy, validated across multiple murine and human …

A Guide To Breaking Seed Dormancy Of Common Wetland Plant Species, Samantha R. Kurkowski, Rae Robinson, Sandra E. Johnston, Montana M. Horchler, Adrienne E. Ernst, Margaret D. Haney, Karin M. Kettenring

All Current Publications

This guide was developed from a series of seed dormancy break and germination experiments conducted over 4 years with 41 species. The purpose of this guide is to synthesize the information we learned through these experiments and present the findings for those interested in breaking seed dormancy, such as land managers, restoration practitioners, and wetland researchers. Ultimately, we hope this guidance catalyzes further wetland restoration throughout the Intermountain West.

Molecular And Cellular Characterization Of Planarian Stem Cell Microenvironments, Frederick G Mann, Carolyn E Brewster, Dung M Vuu, Mol Mir, Riley Galton, Shao-Fu Nien, Enya R Dewars, Carlos Guerrero-Hernández, Jason A Morrison, Mary C Mckinney, Lucinda E Maddera, Melainia L Mcclain, Kate E Hall, Seth Malloy, Shiyuan Chen, Brian D Slaughter, Sean A Mckinney, Stephanie H Nowotarski, Anoja Perera, Blair W Benham-Pyle, Alejandro Sánchez Alvarado

Faculty, Staff and Students Publications

Stem cell niches are essential for regulating stem cell self-renewal and differentiation during tissue repair and regeneration. However, the mechanisms supporting stem cell function in highly regenerative organisms, such as the freshwater planarian Schmidtea mediterranea, remain unclear. Using spatial transcriptomics, we identified two cell types associated with planarian stem cells: secretory cells we term "hecatonoblasts" and intestinal cells. Surprisingly, while hecatonoblasts were in close physical proximity to stem cells in the mesenchyme, they were dispensable for regeneration. In contrast, intestinal cells, despite lacking direct contact with stem cells, regulated both their position and function during regeneration. Electron microscopy revealed diverse …

Exocysteine Application Mitigates Salt Stress In Chickpea (Cicer Arietinum L.), Ece Ni̇sa İmamoğlu, Murat Erdem Güzel, Asi̇m Kadioğlu, Aykut Sağlam

Turkish Journal of Agriculture and Forestry

Environmental factors such as salt stress inhibit the growth of plants and agricultural productivity. Exogenous amino acid application has been shown to benefit plants. However, the effect of cysteine application on salt stress reduction in chickpea (Cicer arietinum L.) is unknown. This study examined how exogenous cysteine could reduce salt stress in 2 chickpea cultivars with different salt tolerances. Salt-resistant Gökçe and salt-sensitive Küsmen cultivars were subjected to 100 mM NaCl stress with or without a 100 μM Cys pretreatment. Without Cys pretreatment, salt stress caused the sensitive Küsmen variety to lose 1.49 times its dry weight and 1.35 times …

Changes In Phenolics And Organic Acid Contents Of Postharvest Eggplants In Response To Preharvest Fertilizer Applications And Postharvest Edible Coatings, Nuretti̇n Yilmaz, Şeyda Çavuşoğlu

Turkish Journal of Agriculture and Forestry

Pre- and postharvest techniques play a key role in improving the quality and shelf life of fresh horticultural products. The aim of this 2-year study was to evaluate the postharvest phenolic and organic acid content in eggplants under different fertilizers and postharvest treatments. Before planting, all plots were treated with 2000 cc da−1 of humic acid through a drip irrigation system. Plots treated only with humic acid were considered the control group. Fifteen days after planting, the other plots were treated with 2000 cc da−1 of liquid vermicompost fertilizer or 2000 cc da−1 of organomineral fertilizer via drip irrigation. Postharvest, …

Development Of Functional Cottage Cheese Enriched With Elderberry Pomace Powder: Nutritional And Antioxidant Enhancement, Roxana Nicoleta Ratu, Florina Stoica, Ioana Cristina Crivei, Ionut Dumitru Velescu, Florin Daniel Lipsa, Andreea Bianca Balint, Romina Alina Marc, Petru Marian Cârlescu, Marius Giorgi Usturoi, Emi̇ne Maci̇t

Turkish Journal of Agriculture and Forestry

The increasing demand for sustainable and functional foods has driven interest in utilising agro-industrial by-products, such as elderberry pomace, to enhance the nutritional and antioxidant properties of food products. This study aimed to develop a functional cottage cheese enriched with elderberry pomace powder (EPP) and evaluate its nutritional composition, antioxidant potential, sensory acceptability, and textural properties. Cottage cheese samples were formulated with EPP at concentrations of 3% and 5%, alongside a control sample devoid of EPP. The results showed that the inclusion of EPP significantly increased the levels of anthocyanins, flavonoids, and polyphenols, along with enhanced antioxidant activity, compared to …

Genetic Characterization And High-Resolution Total Mrna Sequencing Of The Millipede Cherokia Georgiana Bollman, 1889, Elena Cruz

Biology Theses

There are approximately 12,000 described species within the class Diplopoda. Only six species, falling within four of sixteen orders, have fully sequenced genomes. No whole genomes are available for incredibly diverse families like Xystodesmidae. Many interesting characteristics in this group are poorly defined at the genetic level, such as the production of a defensive hydrogen cyanide secretion and UV fluorescence in the order Polydesmida. Here, we present a genetic characterization of the polydesmid millipede Cherokia georgiana Bollman, 1889. We include tissue-specific sequencing metrics, alignment and assembly of mitochondrial DNA consensus sequence according to tissue type, and phylogenetic tree construction using …

The Consciousness Inherent In Chasing Your Tail, Sergio M. Pellis Dr.

Animal Sentience

Who is conscious and how do we know? Complexity in behavior and cognition is certainly a clue that cannot be ignored in identifying this trait, and as Mather’s target article shows, it is hard not to imagine consciousness arising in cephalopods. But how complex is complex? An alternative may be gleaned from the fact that all living things rely on negative feedback to navigate their worlds, and this requires all sentient beings knowing what is to be stabilized in reflection to themselves. If so, consciousness is a universal trait.

The Term Consciousness And Impressive Evidence For Cephalopod Awareness, Donald M. Broom

Animal Sentience

Mather presents comprehensive evidence of cephalopod cognitive ability and of a high level of awareness. The importance of taking account of the biological functioning and adaptations to the living environment is emphasised. An argument is presented that it is better to limit the use of the word conscious to ‘not unconscious’ and to use awareness in relation to the various levels of cognitive functioning.

Female Cardioprotection In A Mouse Model Of Alcohol-Associated Cardiomyopathy, Joshua M. Edavettal, Meagan Donovan, Nicholas R. Harris, Xavier R. Chapa-Dubocq, Keishla M. Rodríguez-Graciani, Janos Paloczi, Liz Simon, Bysani Chandrasekar, Jason D. Gardner

School of Graduate Studies Faculty Publications

Chronic alcohol misuse is the leading cause of non-ischemic dilated cardiomyopathy, and the molecular mechanisms underlying the development of alcohol-associated cardiomyopathy (ACM), particularly regarding sex-specific susceptibility and mitochondrial contributions, are not fully known. In this study, we utilized a preclinical model of chronic + binge ethanol consumption to investigate sex differences in disease severity and mitochondrial function. Male and female C57BL/6J mice were fed ethanol or control liquid diets for 30 days, with 2 binge episodes on days 10 and 30. Cardiac morphology was assessed via echocardiography and cardiac function via left ventricular pressure-volume catheterization. Mitochondrial function was evaluated ex …

Comparative Analysis Of Citrate Synthase Activity In Skeletal Muscle, Liver, And Adipose Tissue In Beef Cattle, Abigail Webb

Honors Program: Senior Projects (Public)

Mitochondrial efficiency plays a central role in determining how cattle partition nutrients toward muscle growth or adipose deposition, yet little is known about tissue-specific differences in mitochondrial density among tissues or among beef cattle. This study aimed to quantify mitochondrial density in muscle, liver, and adipose tissue samples from beef cattle and evaluate its potential relationship with metabolic efficiency. Tissue samples of semitendinosus muscle (ST), liver, and subcutaneous adipose (SC) were collected, homogenized, and analyzed for citrate synthase (CS) activity using a fluorometric assay as a proxy for mitochondrial density. Preliminary analyses revealed that the semitendinosus muscle displayed the highest …

The Impact Of Chemical Parameters Of Surface Water Quality In Prizren And Sources Of Pollution, Sami Gashi, Vehebi Sofiu, Nexhat Balaj, Besar Veseli

UBT International Conference

Our study investigates several chemical indicators of pollution whose parameters have negative impacts on surface water quality in Prizren, focusing on several seasonal months and identifying pollution sources. During a one-year period, water samples were taken at key locations, in the Lumbardh River of Prizren, to analyze several parameters such as pH, dissolved oxygen (DO), biochemical oxygen demand (BOD5), chemical oxygen demand (COD), total dissolved solids (TDS). Surface water quality is subject to more frequent pollution of these parameters especially in different months of the year and were closely monitored to understand their impact on water quality during droughts. The …