Digital Commons Network^™

Influence Of Damming On Anuran Species Richness In Riparian Areas: A Test Of The Serial Discontinuity Concept, Jacquelyn C. Guzy, Evan A. Eskew, Brian J. Halstead, Steve J. Price

Forestry and Natural Resources Faculty Publications

Almost all large rivers worldwide are fragmented by dams, and their impacts have been modeled using the serial discontinuity concept (SDC), a series of predictions regarding responses of key biotic and abiotic variables. We evaluated the effects of damming on anuran communities along a 245‐km river corridor by conducting repeated, time‐constrained anuran calling surveys at 42 locations along the Broad and Pacolet Rivers in South Carolina, USA. Using a hierarchical Bayesian analysis, we test the biodiversity prediction of the SDC (modified for floodplain rivers) by evaluating anuran occupancy and species diversity relative to dams and degree of urbanized land use. …

Present And Future Thermal Environments Available To Sharp-Tailed Grouse In An Intact Grassland, Edward J. Raynor, Larkin Powell, Walter H. Schacht

School of Natural Resources: Faculty Publications

Better understanding animal ecology in terms of thermal habitat use has become a focus of ecological studies, in large part due to the predicted temperature increases associated with global climate change. To further our knowledge on how ground-nesting endotherms respond to thermal landscapes, we examined the thermal ecology of Sharp-tailed Grouse (Tympanuchus phasianellus) during the nesting period. We measured site-specific iButton temperatures (TiB) and vegetation characteristics at nest sites, nearby random sites, and landscape sites to assess thermal patterns at scales relevant to nesting birds. We asked if microhabitat vegetation characteristics at nest sites matched the characteristics that directed macrohabitat …

Summary Of The Stock Structure Information Used For Determining Spatial Management Of The Index Species For The Scalefish Resources Of Northern Western Australia, Daniel J. Gaughan, Stephen J. Newman, Corey B. Wakefield

WA Marine Stewardship Council report series

This paper was specifically developed in response to issues raised in an assessment of the Pilbara Trap Managed Fishery (PTMF) against the fishery sustainability standard of the Marine Stewardship Council (MSC).

The Interactive Effect Of Multiple Stressors On Crustacean Zooplankton Communities In Montane Lakes, Jeffrey Thomas Brittain, Angela L. Strecker

Environmental Science and Management Faculty Publications and Presentations

Nonnative fish introductions have altered thousands of naturally fishless montane lakes, resulting in cascading food web repercussions. Nitrogen deposition has been recognized as an anthropogenic contributor to acidification and eutrophication of freshwater ecosystems, which may affect the abundance and composition of planktonic communities. This study identified responses of zooplankton communities from two lakes (fish present versus absent) in Mount Rainier National Park to manipulations simulating an episodic disturbance of acidification and eutrophication via nitrogen addition in mesocosms. Zooplankton communities from lakes with different food web structure (i.e., fish present or absent) responded differently to the singular effects of acid and …

Acoustic Surveys Of Bats At Northern Great Plains Parks And Preliminary Results From 2014-16, Daniel S. Licht

United States National Park Service: Publications

Executive Summary

From 2014-16, the Northern Great Plains Inventory & Monitoring Network (Network)—in collaboration with the Midwest Regional Biologist—used acoustic methods to monitor bat populations at 12 Network parks. Six parks were monitored using the nascent North American Bat Monitoring Program (NABat) framework. Six other parks did not meet a priori criteria for inclusion in NABat so they were monitored using similar methods, but a non-systematic sampling frame.

Fifty-five NABat stations were established along with 62 non-NABat stations. Stations were typically monitored for 4-7 nights each year using equipment that records the echolocation calls of bats. Fourteen mobile survey routes …

Effects Of Elevated Co2, Increased Nitrogen Deposition, And Plant Diversity On Aboveground Litter And Root Decomposition, Xiaoan Zuo, Johannes Knops

School of Biological Sciences: Faculty Publications

Global change-induced litter decomposition strongly affects the carbon (C) and nitrogen (N) dynamics in grassland ecosystems. However, few studies show the interactive effects of global change factors on litter and root decomposition. We conducted a four-year grassland field experiment to examine the quality and decomposition of litter and root in a three-factorial experiment with elevated CO₂, increased N deposition, and plant species richness. We found that elevated CO₂ decreased the litter N content and root lignin content. N addition increased the root N content and decreased the litter lignin content. Increasing plant richness decreased the N and …

Expanding Spheres: Atoms To Earth, Local To Global, Science To Society, Sarah Green

Distinguished Lecture Series

Best case scenario. Worst case scenario. Sarah Green talks about the human impacts of climate change and responding to those changes on local and global scales. Green, a professor in both the Department of Chemistry and the Great Lakes Research Center at Michigan Technological University, presented the Spring 2018 Distinguished Lecture at the Michigan Tech Research Forum. Her lecture, Expanding Spheres: Atoms to Earth, Local to Global, Science to Society, was Thursday, February 15, 2018.

Among‐Species Overlap In Rodent Body Size Distributions Predicts Species Richness Along A Temperature Gradient, Quentin D. Read, John M. Grady, Phoebe Zarnetske, Sydne Record, Benjamin Baiser, Jonathan Belmaker, Mao-Ning Tuanmu, Angela L. Strecker, Lydia Beaudrot, Katherine M. Thibault

Environmental Science and Management Faculty Publications and Presentations

Temperature is widely regarded as a major driver of species richness, but the mechanisms are debated. Niche theory suggests temperature may affect richness by filtering traits and species in colder habitats while promoting specialization in warmer ones. However, tests of this theory are rare because niche dimensions are challenging to quantify along broad thermal gradients. Here, we use individual-level trait data from a long-term monitoring network spanning a large geographic extent to test niche-based theory of community assembly in small mammals. We examined variation in body size among 23 communities of North American rodents sampled across the National Ecological Observatory …

A Multi-Year Data Set On Aerosol-Cloud-Precipitation-Meteorology Interactions For Marine Stratocumulus Clouds, Armin Sorooshian, Alexander B. Macdonald, Hossein Dadashazar, Kelvin H. Bates, Matthew M. Coggon, Jill S. Craven, Ewan Crosbie, Scott P. Hersey, Natasha Hodas, Jack J. Lin, Arnaldo Negrón Marty, Lindsay C. Maudlin, Andrew R. Metcalf, Shane M. Murphy, Luz T. Padró, Gouri Prabhakar, Tracey A. Rissman, Taylor Shingler, Varuntida Varutbangkul, Zhen Wang, Roy K. Woods, Patrick Y. Chuang, Athanasios Nenes, Haflidi H. Jonsson, Richard C. Flagan, John H. Seinfeld

Environmental Science and Management Faculty Publications and Presentations

Airborne measurements of meteorological, aerosol, and stratocumulus cloud properties have been harmonized from six field campaigns during July-August months between 2005 and 2016 off the California coast. A consistent set of core instruments was deployed on the Center for Interdisciplinary Remotely- Piloted Aircraft Studies Twin Otter for 113 flight days, amounting to 514 flight hours. A unique aspect of the compiled data set is detailed measurements of aerosol microphysical properties (size distribution, composition, bioaerosol detection, hygroscopicity, optical), cloud water composition, and different sampling inlets to distinguish between clear air aerosol, interstitial in-cloud aerosol, and droplet residual particles in cloud. Measurements …

Intensive Land Use And Conservation Planning At The University Of Central Florida, Chelsea R. Piner

The Pegasus Review: UCF Undergraduate Research Journal

Conservation strategies are necessary for cities to meet regional goals of sustainability, but commitments and collaborative efforts among influential stakeholders for economic and developmental growth frequently hinder conservation efforts. This study analyzes how planning documents influence conservation at the University of Central Florida (UCF). I use an inductive method of analysis to explore the stated conservation goals and commitments of UCF's Campus Master Plan. I then compare these objectives with the behaviors of the institution. This research indicates that the absence of collaborative efforts among agencies has resulted in UCF undermining its academic mission. Intensive land-use has sparked global environmental …

Animal Movement Affectsinterpretation Of Occupancy Models From Camera Trap Surveys Of Unmarked Animals, Eric W. Neilson, Tal Avgar, A. Cole Burton, Kate Broadley, Stan Boutin

Wildland Resources Faculty Publications

Occupancy models are increasingly applied to data from wildlife camera-trap (CT) surveys to estimate distribution, habitat use, or relative abundance of unmarked animals. Fundamental to the occupancy modeling framework is the temporal pattern of detections at camera stations, which is influenced by animal population density and the speed and scale of animal movement. How these factors interact with CT sampling designs to affect the interpretation of occupancy parameter estimates is unclear. We developed a simple yet ecologically relevant animal movement simulation to create CT detections for animal populations varying in movement rate, home range area, and population density. We also …

Understanding Abrupt Climate Change Over The Last 100,000 Years, Jennifer Hertzberg

Sustainability Seminar Series

Unlike the relatively stable climate Earth has experienced throughout the Holocene, Earth's climate system underwent a series of abrupt oscillations and reorganizations during the last glacial period and termination.

The first part of this seminar will investigate the trigger for the atmospheric CO2 rise that occurred during the last deglaciation, beginning 17,500 years ago. I will show that abrupt changes in the Atlantic Meridional Overturning Circulation occurring synchronously with the initial CO2 rise may have altered the oceanic biological pump, allowing CO2 to accumulate in the surface ocean and atmosphere. Records of surface and intermediate water foraminiferal δ13C suggest that …

Survival Rates Indicate That Correlations Between Community-Weighted Mean Traits And Environments Can Be Unreliable Estimates Of The Adaptive Value Of Traits, Daniel C. Laughlin, Robert T. Strahan, Peter B. Adler, Margaret M. Moore

Wildland Resources Faculty Publications

Correlations between community-weighted mean (CWM) traits and environmental gradients are often assumed to quantify the adaptive value of traits. We tested this assumption by comparing these correlations with models of survival probability using 46 perennial species from long-term permanent plots in pine forests of Arizona. Survival was modeled as a function of trait-by-environment interactions, plant size, climatic variation, and neighborhood competition. The effect of traits on survival depended on the environmental conditions, but the two statistical approaches were inconsistent. For example, CWM specific leaf area (SLA) and soil fertility were uncorrelated. However, survival was highest for species with low SLA …

Mitochondrial Dna Sequence Alignments And Raw Fastq Files For The Population Genetic Analysis Of The Deep Sea Isopod, Bathynomus Giganteus, Laura Timm, Barbara Moahamed

DEEPEND Datasets

This data set includes three alignments (12S, 16S, COI) of mitochondrial DNA sequences, as well as two raw fastq files generated through the next-generation sequencing (NGS) method ddRADseq. This data was collected from Bathynomus giganteus specimens collected from throughout the northeastern Gulf of Mexico.

Evaluation Of Acoustic Telemetry Grids For Determining Aquatic Animal Movement And Survival, Richard T. Kraus, Christopher M. Holbrook, Christopher S. Vandergoot, Taylor R, Stewart, Matthew D. Faust, Douglas A. Watkinson, Colin Charles, Mark A. Pegg, Eva C. Enders, Charles C. Krueger

School of Natural Resources: Faculty Publications

1. Acoustic telemetry studies have frequently prioritized linear configurations of hydrophone receivers, such as perpendicular from shorelines or across rivers, to detect the presence of tagged aquatic animals. This approach introduces unknown bias when receivers are stationed for convenience at geographic bottlenecks (e.g. at the mouth of an embayment or between islands) as opposed to deployments following a statistical sampling design.

2. We evaluated two-dimensional acoustic receiver arrays (grids: receivers spread uniformly across space) as an alternative approach to provide estimates of survival, movement and habitat use. Performance of variably spaced receiver grids (5–25 km spacing) was evaluated by simulating …

Community-Level Plant–Soil Feedbacks Explain Landscape Distribution Of Native And Non-Native Plants, Andrew Kulmatiski

Wildland Resources Faculty Publications

Plant–soil feedbacks (PSFs) have gained attention for their potential role in explaining plant growth and invasion. While promising, most PSF research has measured plant monoculture growth on different soils in short-term, greenhouse experiments. Here, five soil types were conditioned by growing one native species, three non-native species, or a mixed plant community in different plots in a common-garden experiment. After 4 years, plants were removed and one native and one non-native plant community were planted into replicate plots of each soil type. After three additional years, the percentage cover of each of the three target species in each community was …

Unlocking Past Ocean Circulation And Climate Changes Using Benthic Foraminifera, Chiara Borrelli

Sustainability Seminar Series

The analysis of the chemical and isotopic composition of calcareous benthic foraminifera is a widely used approach to reconstruct changes in ocean circulation and climate through time. In the first part of the seminar, I will present the application of the “traditional” benthic foraminiferal oxygen and carbon isotope ratios to reconstruct ocean circulation changes in the North Atlantic during the greenhouse-icehouse transition, one of the most important climatic and oceanographic transitions of the last 50 million years. In addition, I will present microscopy and spectroscopy data revealing a novel biomineralization strategy in a particular foraminiferal species called Melonis barleeanus. In …

Modeling Mayfly Nymph Length Distribution And Population Dynamics Across A Gradient Of Stream Temperatures And Stream Types, Jeremy Anthony, Jennifer Baccam, Imanuel Bier, Emily Gregg, Leif Halverson, Ryan Mulcahy, Emmanuel Okanla, Samira A. Osman, Adam R. Pancoast, Kevin C. Schultz, Alex Sushko, Jennifer Vorarath, Yia Vue, Austin Wagner, Emily Gaenzle Schilling, John M. Zobitz

Spora: A Journal of Biomathematics

We analyze a process-based temperature model for the length distribution and population over time of mayfly nymphs. Model parameters are estimated using a Markov Chain Monte Carlo parameter estimation method utilizing length distribution data at five different stream sites. Two different models (a standard exponential model and a modified Weibull model) of mayfly mortality are evaluated, where in both cases mayfly length growth is a function of stream temperature. Based on model-data comparisons to the modeled length distribution and the Bayesian Information Criterion, we found that approaches that length distribution data can reliably estimate 2–3 model parameters. Future model development …

Mitochondrial And Nuclear Sequences For Phylogenetic Analysis Of Three Cephalopod Species, Northern Gulf Of Mexico, May 2015 To May 2017, Amanda Sosnowki

DEEPEND Datasets

The midwater column contains a wide diversity of cephalopods in the northern Gulf of Mexico. DNA sequence data (barcodes) have become a key tool to discover hidden biodiversity. We generated mitochondrial DNA barcode datasets based on the Cytochrome c oxidase I (COI), 16s, and 28s genes from cephalopods. These data were analyzed using phylogenetic methods to examine possible connectivity of 3 species (Vampyroteuthis infernalis, Pyroteuthis margaritifera, and Cranchia scabra) between two basins, the Gulf of Mexico and the area surrounding Bear Seamount in the northwestern Atlantic Ocean. These datasets were generated from cephalopods collected in the northern Gulf of Mexico …

2018 Platte River Basin Ecosystem Symposium Proceedings

Water Current Newsletter

CONTENTS

SESSION 1: WATERBIRD HABITAT . 3-9

SANDHILL CRANE ROOSTING HABITAT AND RIVER FLOWS, D.M. Baasch, P.D. Farrell*, A.J. Caven, K.C. King, J.M. Farnsworth, and C.B. Smith 3

HABITAT USE OF SANDHILL CRANES AND WATERFOWL ON THE NORTH AND SOUTH PLATTE RIVERS IN NEBRASKA, D.M. Varner*, A.T. Pearse, A.A. Bishop, J.I. Davis, J.C. Denton, R.C. Grosse, H.M. Johnson, E.J. Munter, K.D. Schroeder, R.E. Spangler, M.P. Vrtiska, and A.E. Wright 3

TEMPORAL AND SPATIAL SHIFTS: THE EFFECTS OF WINTER TEMPERATURES AND HABITAT CHANGE ON SANDHILL CRANE ROOSTING DISTRIBUTIONS IN THE CENTRAL PLATTE RIVER VALLEY, A.J. Caven*, E.M. Brinley Buckley, K.C. King, …

Chlorophyll Concentration And Optical Absorption Spectra Of Particulate And Dissolved Material, Collected At Several Depths On Deepend Cruises Dp05 From January-December 2017, Chuanmin Hu

DEEPEND Datasets

The optical absorption spectra from seawater’s particulate and dissolved components can be used to compute the penetration of light to various depths, estimate the proportion of living to non-living particulate matter, assess photosynthetic light availability and the type of phytoplankton present, and to validate satellite or airborne ocean color measurements. Chlorophyll and phaeopigment concentrations are often used to estimate the amount of phytoplankton present, and to allow extrapolation of in situ fluorometric measurements. Water was collected using a CTD rosette near the surface and from several depths at each sampling station occupied by the DEEPEND cruise DP05 (see GRIIDC dataset …

Detection And Characterization Of The Tin Dihydride (Snh2 And Snd2) Molecule In The Gas Phase, Tony C. Smith, Dennis J. Clouthier

Chemistry Faculty Publications

The SnH₂ and SnD₂ molecules have been detected for the first time in the gas phase by laser-induced fluorescence (LIF) and emission spectroscopic techniques through the ùB₁–X̃¹A₁ electronic transition. These reactive species were prepared in a pulsed electric discharge jet using (CH₃)₄Sn or SnH₄/SnD₄ precursors diluted in high pressure argon. Transitions to the electronic excited state of the jet-cooled molecules were probed with LIF, and the ground state energy levels were measured from single rovibronic level emission spectra. The LIF spectrum of SnD_{2 …}

16s And Coi Barcoding Sequences For Crustaceans Collected From The Northern Gulf Of Mexico For Cruises Dp02, Dp03, And Dp04 From August 2015 - August 2016, Heather Bracken-Grissom Dr.

DEEPEND Datasets

These are the 16S and COI barcoding sequences for crustaceans collected on cruises DP02, DP03, and DP04. These barcodes, obtained from the species we collected, will be used to aid in species identification efforts, evolutionary relationships analyses, adult-larval linkages, and new species discoveries. Samples were taken from animals collected during cruises that took place in the northern Gulf of Mexico from August 2015 - August 2016.

Increased Fluxes Of Shelf-Derived Materials To The Central Arctic Ocean, Lauren Kipp, Matthew A. Charette, Willard S. Moore, Paul B. Henderson, Ignatius G. Rigor

School of Earth & Environment Departmental Research

Rising temperatures in the Arctic Ocean region are responsible for changes such as reduced ice cover, permafrost thawing, and increased river discharge, which, together, alter nutrient and carbon cycles over the vast Arctic continental shelf. We show that the concentration of radium-228, sourced to seawater through sediment-water exchange processes, has increased substantially in surface waters of the central Arctic Ocean over the past decade. A mass balance model for 228Ra suggests that this increase is due to an intensification of shelf-derived material inputs to the central basin, a source that would also carry elevated concentrations of dissolved organic carbon and …

Analysis Of Veterinary Drug Residues In Imported And Domestic Crawfish Using Liquid Chromatography—Mass Spectrometry, Emily Kate Wall

LSU Master's Theses

Aquaculture production has greatly increased over the past few decades, and will continue to grow as the world fisheries become overfished and demand for seafood increases. With increased production comes more intense cultivation methods and heavy use of formulated feeds that may contain veterinary drug residues. Currently no antibiotics are allowed in the U.S. for crawfish aquaculture; yet, detectable levels of various antibiotics have been found in imported seafood samples.The FDA is responsible for testing aquaculture products entering the United States, but only has the capabilities to test a minimal amount of those imports. Additionally, for crawfish there is only …

Modeling Mayfly Nymph Length Distribution And Population Dynamics Across A Gradient Of Stream Temperatures And Stream Types, Jeremy Anthony, Jennifer Baccam, Imanuel Bier, Emily Gregg, Leif Halverson, Ryan Mulcahy, Emmanuel Okanla, Samira A. Osman, Adam R. Pancoast, Kevin C. Schultz, Alex Sushko, Jennifer Vorarath, Yia Vue, Austin Wagner, Emily Gaenzle Schilling, John Zobitz

Faculty Authored Articles

We analyze a process-based temperature model for the length distribution and population over time of mayfly nymphs. Model parameters are estimated using a Markov Chain Monte Carlo parameter estimation method utilizing length distribution data at five different stream sites. Two different models (a standard exponential model and a modified Weibull model) of mayfly mortality are evaluated, where in both cases mayfly length growth is a function of stream temperature. Based on model-data comparisons to the modeled length distribution and the Bayesian Information Criterion, we found that approaches that length distribution data can reliably estimate 2–3 model parameters. Future model development …

Can Genomic Variation Explain The Extinction Of The Passenger Pigeon?, Chih-Ming Hung, R. M. Zink, Shou-Hsien Li

School of Natural Resources: Faculty Publications

No abstract provided.

Hybrid Speciation In Birds, With Special Reference To Darwin's Finches, G. E. Hill, R. M. Zink

School of Natural Resources: Faculty Publications

No abstract provided.

Gene Flow From Single And Stacked Herbicide-Resistant Rice (Oryza Sativa): Modeling Occurrence Of Multiple Herbicide-Resistant Weedy Rice, Joseph Dauer, Andrew Hulting, Dale Carlson, Luke Mankin, John Harden, Carol Mallory-Smith

School of Natural Resources: Faculty Publications

Background: Provisia™ rice (PV), a non-genetically engineered (GE) quizalofop-resistant rice, will provide growers with an additional option for weed management to use in conjunction with Clearfield® rice (CL) production. Modeling compared the impact of stacking resistance traits versus single traits in rice on introgression of the resistance trait to weedy rice (also called red rice). Common weed management practices were applied to 2-, 3- and 4-year crop rotations, and resistant and multiple-resistant weedy rice seeds, seedlings and mature plants were tracked for 15 years.

Results: Two-year crop rotations resulted in resistant weedy rice after 2 years with abundant populations (exceeding …

Dominant Plant Species Shape Soil Bacterial Community In Semiarid Sandy Land Of Northern China, Shaokun Wang, Xiaoan Zuo, Xueyong Zhao, Tala Awada, Yongqing Luo, Yuqiang Li, Hao Qu

School of Natural Resources: Faculty Publications

Plant species affect soil bacterial diversity and compositions. However, little is known about the role of dominant plant species in shaping the soil bacterial community during the restoration of sandy grasslands in Horqin Sandy Land, northern China. We established a mesocosm pots experiment to investigate short-term responses of soil bacterial diversity and composition, and the related soil properties in degraded soils without vegetation (bare sand as the control, CK) to restoration with five plant species that dominate across restoration stages: Agriophyllum squarrosum (AS), Artemisia halodendron (AH), Setaria viridis (SV), Chenopodium acuminatum (CA), and Corispermum macrocarpum (CM). We used redundancy analysis …