Digital Commons Network^™

Multi-Model Digital Twins With Ai Forecasting For Seed To Stand Supply Chain, Rania Sherif Elashmawy

USF Tampa Graduate Theses and Dissertations

The present dissertation embodies a multi-faceted investigation aimed at enhancing strawberry production pre-harvest and post-harvest quality through data-driven approaches. It unfolds multi-stages framework.

The first stage presents a complete data collection and its preliminary statistical analysis obtained from the first phase of a large-scale soil study on how to improve strawberry production and achieve sustainable and high-quality harvests through sensor-assisted real-time field monitoring. Six real-time loggers were placed in an operational commercial strawberry farm in Central Florida for the entirety of a harvest season from soil preparation to planting to harvesting. Along with high-resolution soil sensory measurements including water content, …

Bureaucratic Politics Run Amok: The United States And Satellite Export Controls, Eligar Sadeh

Space and Defense

The case of export controls of United States (U.S.) commercial satellites is characterized by bureaucratic politics leading to policy outcomes that are not rational, i.e., the desired outcome of national security is not met and commerce in the satellite sector is harmed. The constraints to rational policy making are a result of competition, conflict, and protectionism, the “bureaucratic politics,” among the relevant actors including the U.S. President and Congress, Department of State (State), Department of Commerce (Commerce), and Department of Defense (DOD). It is bureaucratic politics that result in policies for licensing the export of commercial satellites that are far …

Evolutionary Conservation And Times Of Action Of Heterochronic Genes, Maria Ivanova

Theses and Dissertations

The heterochronic pathway of C. elegans is the most well-characterized system to date for controlling the sequence and timing of developmental events. However, we still have critical unanswered questions to address. First, little is known about the evolution of the heterochronic pathway, and of developmental timing in general. To determine if the roles of major heterochronic genes are conserved, I made mutants in orthologs of these genes in C. briggsae, using CRISPR/Cas9. My studies revealed a significant drift in the roles of some of the genes, although all of them are still involved in the developmental timing regulation, and several …

An Exploration Of Tissue Specific Impedance Using Microneedle Based Wearable Sensors, Kaitlyn J.H. Read

Nanoscience and Microsystems ETDs

Within this research, I have developed a microneedle-based wearable sensor for plants and fungi, to measure the electrical impedance of different tissues. Electrical impedance measures the physical properties of a material while allowing complex biological systems to be modeled onto a simplified electrical circuit. Microneedles allow for electrical impedance to measure specific tissues without the insulative properties of the cuticle and can be applied to delicate tissues. I have demonstrated the tissue specificity, novel attachment methods, as well as use on both plants and fungi. In chapter 1, I applied microneedle-based impedance to the leaf midrib of a sorghum and …

Compound Flooding In A Non-Stationary World: A Primer For Practice, Gerarda M. Shields, J. Rolf Olsen, Miguel Medina Jr., Jayantha Obeysekera, Poulomi Ganguli, Carlo Demichele, Gianfausto Salvadori, Mohammad Reza Najafi, Hamed Moftakhari, Ferdinand Diermanse, Amir Aghakouchak

Publications and Research

Compound flooding conditions present a significant challenge for civil engineers in their pursuit to design for and maintain the integrity of a structure’s entire life cycle. Coupled with non-stationary processes due to a changing climate and land use change, risk is a moving target. Through the support of ASCE’s Task Committee on Compound Flooding, the Hydroclimatology Engineering Adaptation (HYDEA) sub-committee is developing a Manual of Practice (MOP) to provide a synthesis of available tools and methods of best practice for civil engineers designing for compound flooding conditions. This paper presents a primer for practicing civil engineers on this work. Hydrodynamic …

Compatibility Investigation Of Waste Plastics In Bitumen Via A Molecular Dynamics Method, Hui Yao, Xin Li, Hancheng Dan, Qingli Dai, Zhanping You

Michigan Tech Publications

The compatibility between waste plastic polymers and bitumen is the most challenging issue hindering the improvement of modified bitumen performance. The current practice of recycled waste plastics includes the use of polyvinyl chloride (PVC), polypropylene (PP), polyethylene (PE), etc. This study was designed to investigate the compatibility of different waste plastic polymers with bitumen binders by conducting molecular dynamics (MD) simulations at different temperatures. The molecular models of these materials were constructed in this study for the compatibility analysis, and they include the base bitumen, polymers (PVC, PP, and PE), polymer- bitumen blending systems. Using the output and related calculations …

Swelling Induced Buckling Of Photopatterned Hydrogel Beams, Chinar Yogesh Kokaje

USF Tampa Graduate Theses and Dissertations

The main goal of this study was to learn more about swelling induced buckling of surface-attached gel lines photo-patterned from thermally responsive polymers. A library of 10 different polymer compositions was synthesized using methacryloyloxybenzophenone (MABP) as the photo-cross-linking monomer. For each of the polymers, a series of beam-like patterns were prepared on polystyrene tissue culture dishes by first depositing a known amount of polymer into the tissue culture dish followed by pattern generation using a photo-lithography mask with line widths of 10, 20, 30, 50, and 80 μm. The target height of each polymer line was 100 μm. After development …

Space Verification, Eisenhower Center For Space And Defense Studies

Space and Defense

The purpose of this study is twofold: first, to determine to what extent multilateral agreements to limit disruptive actions in space and/or establish norms of behavior are verifiable; second, to consider under what circumstances space verification serves U.S. interests.

Cyber Deterrence: Is A Deterrence Model Practical In Cyberspace?, Nathaniel Youd

Space and Defense

Student Contribution:

After reconsidering massive retaliation versus escalation dominance concepts from nuclear deterrence, escalation dominance, investing in capability to respond proportionally at each level of cyber attack, may be the most practical and effective military strategy for strengthening cyber deterrence.

Cyberwar: Clausewitzian Encounters, Marco Cepik, Diego Rafael Canabarro, Thiago Borne Ferreira

Space and Defense

As Clausewitz’s masterpiece suggests, language matters for how states conceptualize and plan for war. ‘Cyberwar’, now on the lips of nearly every national security policymaker, may turn out to be a misnomer.

Strategic Nuclear Weapons For Planetary Defense, James Howe

Space and Defense

The planet Earth is continually under bombardment. Each day, roughly 100 tons of small meteoroids and space debris – some as large as a meter in diameter, but most smaller than a grain of sand – strike the atmosphere. Moving at speeds in excess of 40,000 kilometers per hour, these meteoroids are often seen as bright streaks in the sky as they burn up from atmospheric friction. Fortunately, because they are consumed high in the atmosphere, meteoroids and space dust pose no threat to humans or other life on Earth.

Transport Barriers Influence The Activation Of Anti-Tumor Immunity: A Systems Biology Analysis, Mohammad R. Nikmaneshi, James W. Baish, Hengbo Zhou, Lance L. Munn

Faculty Journal Articles

Effective anti-cancer immune responses require activation of one or more naïve T cells. If the correct naïve T cell encounters its cognate antigen presented by an antigen presenting cell, then the T cell can activate and proliferate. Here, mathematical modeling is used to explore the possibility that immune activation in lymph nodes is a rate-limiting step in anti-cancer immunity and can affect response rates to immune checkpoint therapy. The model provides a mechanistic framework for optimizing cancer immunotherapy and developing testable solutions to unleash anti-tumor immune responses for more patients with cancer. The results show that antigen production rate and …

An Overview Of Elements And Relations: Aspects Of A Scientific Metaphysics, Martin Zwick

Complex Systems Faculty Publications and Presentations

A talk on my book, Elements and Relations: Aspects of a Scientific Metaphysics. Book description:

This book develops the core proposition that systems theory is an attempt to construct an “exact and scientific metaphysics,” a system of general ideas central to science that can be expressed mathematically. Collectively, these ideas would constitute a non-reductionist “theory of everything” unlike what is being sought in physics. Inherently transdisciplinary, systems theory offers ideas and methods that are relevant to all of the sciences and also to professional fields such as systems engineering, public policy, business, and social work. To demonstrate the generality …

Syntheses, Photophysics, & Application Of Porphyrinic Metal-Organic Frameworks, Zachary L. Magnuson

USF Tampa Graduate Theses and Dissertations

Porphyrins are a group of heterocyclic macrocycles that play crucial roles in various biological processes such as electron transfer, catalysis, and sensing. Hemoglobin, which carries oxygen in the blood of mammals, and chlorophyll, which drives photosynthesis in plants and algae, are both porphyrins. The ability of porphyrins to bind metal ions and their unique electronic and photophysical properties make them an excellent platform for designing functional materials for various applications, often drawing inspiration from their function in nature. Metal-organic frameworks (MOFs) are a class of porous materials that have been extensively studied in recent years due to their high surface …

Analog Artificial Neurons And Digital Amplifiers: Challenging The Roles Of Analog And Digital Circuit Architectures In Modern Cmos Processes, Taylor S. Barton

Theses and Dissertations

As complimentary metal-oxide semiconductor (CMOS) technologies scale and field-effect transistor (FET) architectures change, the factors in deciding to utilize analog or digital transistor behaviors evolve. This thesis examines three case studies where traditionally analog or digital circuitry has dominated published works but I show that the opposite regime has significant benefits in scaled CMOS technologies. I present a highly digital operational amplifier (traditionally analog) and two artificial neurons (traditionally digital). In Chapters 2 and 3 I present a highly-digital five-stage zero-crossing-based amplifier which breaks the trade-off between slew rate and settling accuracy. I investigate the optimal charge pump design by …

Environmental Sustainability Of Small Wastewater Treatment Systems And Pathways For Improvement, Matthew James Thompson

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Wastewater treatment protects society and the environment by reducing pollutants generated from communities prior to discharge into local water bodies. Small water resource recovery facilities (WRRFs) represent the majority of centralized wastewater treatment systems, are resource intensive, and often lack resources needed to evaluate sustainability improvements. The goal of this dissertation was to identify primary sources and drivers of environmental impacts in small WRRFs and exploration of pathways to improve their environmental sustainability.

Case study data collected from small WRRFs in Nebraska was analyzed using environmental life cycle assessment (LCA) to quantify the environmental impact of facilities and existing opportunities. …

Room Temperature Two-Dimensional Electron Gas Scattering Time, Effective Mass, And Mobility Parameters In AlXGa1−XN/Gan Heterostructures (0.07 ≤ X ≤ 0.42), Sean Knight, Steffen Richter, Alexis Papamichail, Philipp Kühne, Nerijus Armakavicius, Shiqi Guo, Axel R. Persson, Vallery Stanishev, Viktor Rindert, Per O. Å. Persson, Plamen P. Paskov, Mathias Schubert, Vanya Darakchieva

Department of Electrical and Computer Engineering: Faculty Publications

Al_xGa_1-xN/GaN high-electron-mobility transistor (HEMT) structures are key components in electronic devices operating at gigahertz or higher frequencies. In order to optimize such HEMT structures, understanding their electronic response at high frequencies and room temperature is required. Here, we present a study of the room temperature free charge carrier properties of the two-dimensional electron gas (2DEG) in HEMT structures with varying Al content in the Al_xGa_1-xN barrier layers between x = 0:07 and x = 0:42. We discuss and compare 2DEG sheet density, mobility, effective mass, sheet resistance, and scattering times, …

Reynolds-Averaged Navier-Stokes Simulations Of Nearshore Langmuir Circulation And The Formation Of Oil-Particle Aggregates, Juan J. Penaloza Gutierrez

USF Tampa Graduate Theses and Dissertations

Langmuir turbulence in the inner shelf coastal ocean is characterized by Langmuir circulation (LC) or cells that can span the full depth of unstratified water columns. A Reynolds-averaged Navier-Stokes (RANS) simulation strategy resolving full-depth LC coupled with an oil-particle aggregate (OPA) formation model is introduced. The RANS methodology is employed in two different cases. The first case corresponds to a shallow shelf zone of uniform depth, focusing on vertical mixing and transport of OPAs. The second case pertains to a surf-shelf transition zone with variable depth, comprising vertical and horizontal mixing of OPAs. In the latter case, a wave model …

Characterization Analysis And Design Of Mid-Wave Infrared Iii- V-Based Type-Ii Superlattice Nbn Photodetectors For Space Applications, Alexander Timothy Newell

Electrical and Computer Engineering ETDs

The performance of the mid-wave infrared InGaAs/InAsSb nBn photodetector is investigated and its viability for space applications is assessed. Three structures are grown with unique absorber layer doping profiles via molecular beam epitaxy. Material and device characterizations are performed and analyzed to determine the effects of doping on fundamental material parameters and detector performance. Noise-equivalent irradiance is calculated to be a factor of 4x that of an ideal detector exhibiting Rule 07 dark current and 100% quantum efficiency, demonstrating high sensitivity. The structures are then irradiated with 63 MeV protons to evaluate the extent of performance degradation over the course …

Integrative Transcriptomics And Proteomics Profiling Of Arabidopsis Thaliana Elucidates Novel Mechanisms Underlying Spaceflight Adaptation, Gbolaga O. Olanrewaju, Natasha J. Haveman, Michael J. Naldrett, Anna-Lisa Paul, Robert J. Ferl, Sarah E. Wyatt

Nebraska Center for Biotechnology: Faculty and Staff Publications

Spaceflight presents a unique environment with complex stressors, including microgravity and radiation, that can influence plant physiology at molecular levels. Combining transcriptomics and proteomics approaches, this research gives insights into the coordination of transcriptome and proteome in Arabidopsis’ molecular and physiological responses to Spaceflight environmental stress. Arabidopsis seedlings were germinated and grown in microgravity (μg) aboard the International Space Station (ISS) in NASA Biological Research in Canisters – Light Emitting Diode (BRIC LED) hardware, with the ground control established on Earth. At 10 days old, seedlings were frozen in RNA-later and returned to Earth. RNA-seq transcriptomics and TMTlabeled LC-MS/MS proteomic …

Attack On The Brain: Neurowars And Neurowarfare, Armin Krishnan

Space and Defense

Is neurotechnology leading nation-states toward a new domain of war? Neuroscience is on the verge of deciphering the human brain. As a result, brains will become a part of the battlefield against which attacks will be directed. As neuroscientist James Giordano argued: “the brain is the next battlespace.” It is foreseeable that this will have tremendous implications for warfare and could amount to a true military revolution in the sense of military historian Williamson Murray: it would completely change the characteristics of conflict, as well as transform state and society.

Editor's Note Volume 9 No. 1, Damon Coletta

Space and Defense

No abstract provided.

Addition Of Fibers Derived From Paper Mill Sludge In Paper Coatings: Impact On Microstructure, Surface And Optical Properties, Bilge N. Altay, Burak Aksoy, Anamiqa Huq, Richard Hailstone, Charles P. Klass, Muslum Demir, Scott Williams

Articles

Traditionally, cellulose nanofiber (CNF) production has primarily relied on virgin cellulose sources. Yet, the shift to using paper mill sludge (PMS) as a source for CNF underscores the significance of reusing and recycling industrial byproducts. PMS contains significant amounts of cellulose that can be extracted as a raw material. The purpose of present study is to provide a sustainable approach to PMS utilization as a paper coating additive in the cellulose nanofibrils (CNFPMS) form via simply scalable wire-wound rod coating method. The effect of CNFPMS additive amounts at two coating layers on microstructure and surface properties of coatings such as …

Organic Electronics In Biosensing: A Promising Frontier For Medical And Environmental Applications, Jyoti Bala Kaushal, Pratima Raut, Sanjay Kumar

Durham School of Architectural Engineering and Construction: Faculty Publications

The promising field of organic electronics has ushered in a new era of biosensing technology, thus offering a promising frontier for applications in both medical diagnostics and environmental monitoring. This review paper provides a comprehensive overview of organic electronics’ remarkable progress and potential in biosensing applications. It explores the multifaceted aspects of organic materials and devices, thereby highlighting their unique advantages, such as flexibility, biocompatibility, and low-cost fabrication. The paper delves into the diverse range of biosensors enabled by organic electronics, including electrochemical, optical, piezoelectric, and thermal sensors, thus showcasing their versatility in detecting biomolecules, pathogens, and environmental pollutants. Furthermore, …

Exciton Delocalization In A Fully Synthetic Dna-Templated Bacteriochlorin Dimer, Olga A. Mass, Devan R. Watt, Lance K. Patten, Ryan D. Pensack, Jeunghoon Lee, Daniel B. Turner, Bernard Yurke, William B. Knowlton

Materials Science and Engineering Faculty Publications and Presentations

A bacteriochlorophyll a (Bchla) dimer is a basic functional unit in the LH1 and LH2 photosynthetic pigment–protein antenna complexes of purple bacteria, where an ordered, close arrangement of Bchla pigments—secured by noncovalent bonding to a protein template—enables exciton delocalization at room temperature. Stable and tunable synthetic analogs of this key photosynthetic subunit could lead to facile engineering of exciton-based systems such as in artificial photosynthesis, organic optoelectronics, and molecular quantum computing. Here, using a combination of synthesis and theory, we demonstrate that exciton delocalization can be achieved in a dimer of a synthetic bacteriochlorin (BC …

Interdependency Between Water And Road Infrastructures: Cases And Impacts, Shihab Uddin

USF Tampa Graduate Theses and Dissertations

This dissertation studies the interdependency between road and water infrastructures and associated interdependency impact on these two critical infrastructure systems. Critical infrastructures and the interdependency among these infrastructures have gained much attention recently because of its growing complexity, importance, and vulnerability to natural and man-made threats. In response, researchers have spent significant effort to study these infrastructures individually as well as when they are interdependent to understand complex interdependency relationship and to figure out ways to make these infrastructures more reliable, robust, and resilient. However, water and road infrastructure systems have not been studied as vastly as other critical infrastructures …

Advanced Multiscale Molecular Dynamics Simulations Of Amorphous Polymers, Sahar Zenoozi

USF Tampa Graduate Theses and Dissertations

Polymers are in a wide range of material forms with various resources, including natural to synthetic processes. Polymers consist of covalently bonded monomers to each other. The chain length of polymers varies from a few monomers to thousands of monomers. This wide range of chain length enables polymers with attractive capabilities of chemical and physical properties. Thus, polymers are highly attractive in different scientific and industrial applications such as drug delivery, optical coatings, catalysts, semiconductors and organic photovoltaics. This work has combined updated accurate methods for accurate initial conformations, and modified force field parameters to produce a generalized method for …

Multicellular And Multiscale Models Of Microbes And Host Systems, Elebeoba May

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

A Multi-Organ Maize Metabolic Model Connects Temperature Stress With Energy Production And Reducing Power Generation, Niaz Bahar Chowdhury, Margaret Simons- Senftle, Berengere Decouard, Isabelle Quillere, Martine Rigault, Karuna Anna Sajeevan, Bibek Acharya, Ratul Chowdhury, Bertrand Hirel, Alia Dellagi, Costas Maranas, Rajib Saha

Department of Chemical and Biomolecular Engineering: Faculty Publications

Climate change has adversely affected maize productivity. Thereby, a holistic understanding of metabolic crosstalk among its organs is important to address this issue. Thus, we reconstructed the first multi-organ maize metabolicmodel, iZMA6517, and contextualized itwith heat and cold stress transcriptomics data using expression distributed reaction flux measurement (EXTREAM) algorithm. Furthermore, implementing metabolic bottleneck analysis on contextualized models revealed differences between these stresses. While both stresses had reducing power bottlenecks, heat stress had additional energy generation bottlenecks.We also performed thermodynamic driving force analysis, revealing thermodynamics-reducing power-energy generation axis dictating the nature of temperature stress responses. Thus, a temperaturetolerant maize ideotype can …

Optimal Inverter-Based Resource Installation To Minimize Technical Energy Losses In Distribution Systems, Felipe B. Dantas, Damasio Fernandes, Washington L.A. Neves, Alana K.X.B. Branco, Flavio Costa

Michigan Tech Publications

This paper proposes an algorithm for the optimal installation of inverter-based resources (IBR) composed of wind energy conversion systems, photovoltaic systems, and battery energy storage systems in distribution systems using genetic algorithm (GA) and the cuckoo search (CS) as optimization techniques. The OpenDSS software is used to calculate the power flow in the distribution system with different penetration levels of IBRs. It is used a standard load shape of the IEEE 123 bus system programmed in OpenDSS and irradiance, temperature, and wind speed curves from Brazil. The proposed algorithm, using a genetic algorithm and cuckoo search, was able to define …