Digital Commons Network^™

Developing Aero-Floating Treatment Wetland (Aeroftw) Scaffolds: A Non-Plastic Alternative To Conventional Plastic-Based Ftws, Ada C. Montoya Gomez

All Theses

This research was conducted to explore the possibility of constructing floating treatment wetlands (FTWs) without using plastic materials. FTWs are floating platforms that hold plants on the water’s surface, letting roots dangle within the water column, to help remove contaminants from contaminated water, especially in stormwater ponds. Many conventional FTWs are made with plastic components, such as mats and plastic cup containers, which can release microplastics into the environment over time. The goal of this project was to design and test a new type of FTW that does not depend on plastics to support FTW flotation. The study took place …

Establishing Caenorhabditis Elegans As A Platform For Bioaccumulation And Selectivity Screening Of Anthelmintic Compounds, Jiarui Li

McKelvey School of Engineering Graduate Student Theses & Dissertations

To address the cuticular barrier in anthelmintic discovery, this study establishes a bifurcated framework in Caenorhabditis elegans. First, HPLC-based quantification of 14 PIM inhibitors revealed that cuticular penetrance is primarily dictated by phylogenetic lineage (Clade V) rather than ecological niche. Specifically, C. elegans demonstrated a significant pharmacokinetic correlation with the hookworm Ancylostoma ceylanicum (Clade V) but not the whipworm Trichuris muris (Clade I), validating it as a superior surrogate model for hookworm bioaccumulation. Within this small molecule inhibitor library, SGI-12was identified as a lead candidate with superior potency against C. elegans and bioaccumulation. Second, target validation using a C. …

Data-Driven Multimodal Mri Representation Learning For Subtype Discovery And Disease Progression Modeling In Parkinson’S Disease, Zihan Zhou

McKelvey School of Engineering Graduate Student Theses & Dissertations

Parkinson’s disease (PD) exhibits substantial clinical and neuroanatomical heterogeneity, limiting robust patient stratification and clinically meaningful progression modeling from MRI. We propose a unified multimodal 3D generative representation-learning framework that learns an interpretable latent space from co-registered baseline T1/T2 MRI with an edge-aware channel. Confound-corrected latent embeddings support unsupervised subtype discovery, while disease duration provides weak supervision to orient a continuous progression axis. On an independent external cohort (PPMI, N=171), the discovery-trained subtype structure shows significant partial replication (ARI=0.35; permutation test p=0.001) and enables longitudinal clinical stratification: mixed-effects modeling reveals subtype-dependent MDS-UPDRS III progression, with the strongest effect in subtype …

Small-Scale Analog Spiking Neural Network: Design And Simulation Of An Analog Deep Neural Network, Lucas Hogue

Electrical Engineering and Computer Science Undergraduate Honors Theses

A small-scale analog schematic of a spiking neural network (SNN) is designed and demonstrated through the analog design environment (ADE) within Cadence Virtuoso. An SNN is a type of neuromorphic system that utilizes components mimicking the function of the neurons and synapses found in biological neural networks. The SNN designed in this project is composed of four layers: one input layer, two hidden layers, and one output layer. The inclusion of more than one hidden layer classifies the network as “deep” and increases the network’s efficiency at handling data with increased complexity. The SNN categorizes inputs by producing a set …

Adsorption Of Pfas On Bridged Functionalized Organosilica Materials, Elisha Lawerh Kabutey

Electronic Theses and Dissertations

PFAS are hazardous contaminants that have a devastating impact on human health and the environment. Their hazardous nature has led to the development of various adsorption methods for removing these contaminants from water sources. In this study, functionalized organosilica materials were synthesized from bis[3-(trimethoxysilyl)propyl] amine using the sol-gel method. The surface amino groups of the organosilica were converted into amine hydrochloride groups. Their adsorption properties were evaluated using salts of perfluorooctanoic acid, perfluorooctanesulfonic acid, and perfluorobutanesulfonic acid. Results showed excellent adsorption capacity of the materials. Adsorption of PFAS leads to particle agglomeration and flotation of the spent material. A column …

An Experimental Study Of The Morphology Of Dna-Carbon Nanotube Hybrid Structures In Direct Dna Sequencing, Avery P. Davis

Biomedical Engineering Undergraduate Honors Theses

Hybrid structures formed between single-stranded DNA (ssDNA) and single-walled carbon nanotubes (SWCNT) have emerged as promising components in future direct DNA sequencing technologies due to their unique morphological and electronic properties. The nanoscale configuration of these hybrids, including the DNA wrapping angle, pitch, and contour behavior, directly influences their potential for stable electronic readout. This thesis presents an experimental study of DNA-SWCNT hybrid morphology using a fixed, reproducible wrapping protocol designed to minimize environmental variability and isolate the influence of DNA nucleotide sequence on hybrid structure. As described in prior work, this protocol produces well-dispersed hybrids suitable for high-resolution imaging. …

Harness: Hybrid Architecture For Resilience In Networked Engineering System Simulations, Daniel Scott

Graduate Theses and Dissertations

This dissertation presents the development of HARNESS, a unified, domain-agnostic framework for the modeling, optimization, and evaluation of complex systems under conditions of degradation and uncertainty. The research addresses a persistent challenge in systems engineering: the lack of a generalizable, behaviorally grounded approach for quantifying resilience and robustness across diverse domains. HARNESS integrates graph-theoretic dependency modeling, GPU-accelerated evolutionary optimization, and agent-based simulation into a modular architecture that enables both system design and diagnostic analysis. The framework models system interdependencies through user-defined components, parameters, and constraints, allowing architectures to evolve dynamically while maintaining structural validity. A mutation-only genetic algorithm with a …

Transformation Efficiency And Gfp Expression In E. Coli, Jessica H. Hobbs

Honors Theses

Genetic transformation of bacteria is a foundational technique in molecular biology and biotechnology, enabling the introduction and expression of foreign genes for research, industrial, and educational applications. This thesis investigates the transformation efficiency and green fluorescent protein (GFP) expression in Escherichia coli using the pGLO plasmid system, with the primary objective of supporting the development of a graduate-level laboratory course focused on bioprocess engineering and molecular biotechnology. The pGLO plasmid contains a GFP reporter gene regulated by an arabinose-inducible promoter and an ampicillin resistance gene that allows for selective growth of transformed cells. Competent E. coli HB101 K-12 cells were …

Salt-Dependent Purification Of Green Fluorescent Protein Via Hydrophobic Interaction Chromatography, Katie L. Collins

Honors Theses

Green fluorescent protein, GFP, is a widely used fluorescent reporter, and its purification provides a clear model for studying downstream bioprocessing. This thesis investigates how binding-buffer salt strength affects GFP retention and elution during hydrophobic interaction chromatography, HIC, by comparing three conditions (1.0×, 0.8×, and 0.6×). GFP-expressing E. coli were lysed and clarified, and the lysate was purified on HIC columns; collected fractions were evaluated qualitatively under UV illumination to track fluorescence distribution. Results showed a salt-dependent trend in which higher salt improved retention and shifted fluorescence toward later elution fractions, while reduced salt weakened hydrophobic interactions and increased earlier …

2026 Workshop On Bridging The Gaps: Tackling Microplastics And Nanoplastics Challenges In Coastal Ecosystems, Shenghua Wu, Kaushik Venkiteshwaran, Melike Dizbay-Onat, Alexandra Stenson, Jinhui Wang, Tina Miller-Way, Ebenezer Nyadjro, Bhuvnesh Bharti, John Weinstein, Yi Bao, Shihui Shen, Valerie Longa, Shenghua Zha, John Cleary, Marty Lind

Workshops

This report presents the findings from the 2026 Workshop on Tackling Microplastics and Nanoplastics (MNPs) in Coastal Ecosystems, which took place in Mobile, Alabama. More than 140 experts from universities, government, industry, and community organizations gathered to address the increasing issue of MNPs in coastal regions.

Central Pattern Generator Test Bench Report, Stephanie Wing-Yee Lee, Dustin Wong, Joseph Hernandez

Electrical Engineering

The project presents the design, fabrication, and implementation of a PCB test bench that interfaces with a custom VLSI chip designed to emulate the neural activity of a Central Pattern Generator (CPG). The test bench provides a precise and reliable platform for supporting signal operations and validating neuromorphic functionality. The design integrates both analog and digital circuitry to provide stable biasing, signal routing, and measurement access for chip characterization. The incorporation of op-amp buffers and adjustable potentiometers enables precise voltage tuning, resulting in controlled neuron-like behavior within the custom IC. The two-layer PCB supports modular interfacing with standard laboratory instruments …

Developing Warning Signage For Harmful Algal Blooms At Lake Fayetteville, Abigail R. Evans

Biological Sciences Undergraduate Honors Theses

The presence of harmful algal blooms (HABs) poses many risk factors for human health, and once microcystin concentration has reached a certain level, that water source will be closed for the duration of the bloom. Agencies tend to use static signage with limited information to inform the public about the current status of the water, but a sign similar to the one used by the National Fire Danger Rating System can allow for constant updates detailing specific risk levels for the public. Using previously reported data on Lake Fayetteville, thresholds for risk factors that are easily measurable were determined. The …

Enhancing Methods For Load Rating Bridge Timber Piles, Aashish Ghimire

Graduate Theses and Dissertations

Timber piles are widely used in bridge foundations across the United States due to their low cost and ease of installation. The strength of a timber pile is dependent on many factors including wood species, unbraced length, support conditions, age and cross-sectional properties. Cross-sectional properties are highly impacted by the progression of biological deterioration which often is undetected when using standard DOT inspections methods. Current inspection practices rely primarily on subjective methods that provide limited quantitative information about a pile’s existing load-carrying capacity. Consequently, timber piles are inaccurately assessed and prematurely replaced. In response, this thesis investigates the relationship between …

Automated Circuit Design Algorithm And Implementation For Asynchronous Reset (Ares) Physically Unclonable Functions, Andrew Michael Felder

Graduate Theses and Dissertations

Technology is increasingly interwoven in all aspects of society as it solves new problems, creates new possibilities, and enables new conveniences. With its unceasing evolution, environments handling protected information such as military, finance, and medicine demand ever-evolving threat mitigation. Combating attackers’ abilities to spoof devices, uncover cryptographic keys, and bypass security features is a never-ending task which drives technological advancement to improve existing capabilities and develop entirely new methodologies. In this dissertation work, the hybrid Asynchronous RESet Physically Unclonable Function (ARES PUF) is evaluated at the circuit to determine its merits as a PUF. As part of this evaluation, results …

Experimental Data-Driven System Identification Of Scale-Model Airboat Dynamics For Control And Autonomy Applications, Miguel A. Trejos

LSU New Orleans Theses and Dissertations

To achieve autonomous control of a surface watercraft requires an accurate model describing the dynamics of the system. To this end, the modeling of dynamics of an airboat with a combustion engine-based propulsion system is investigated. Specifically, a black-box data-based approach using neural networks. To facilitate this, a custom data collection system was developed to record linear and rotational motion during field tests. Due to the airboats unique ability to traverse different terrains, not just water, the modeling of dynamics on different terrains was investigated.

Predicting Personalized Myocardial Fibrosis Response Patterns Using A Mechanistic Signaling Network Model, Jared Noel

Chemical Engineering Undergraduate Honors Theses

Myocardial fibrosis is a key driver of heart failure progression and exhibits substantial patient-to-patient variability, complicating the development of effective personalized therapies. In this study, we present an integrated computational framework that combines a mechanistic signaling network model with patient-specific proteomic data to predict individualized fibrotic responses and therapeutic strategies. Using proteomic measurements from the Framingham Heart Study, we generated personalized baseline states and performed systematic in silico perturbation screens to evaluate candidate drug targets across 132 signaling nodes. Results reveal that while global network response structure is conserved, therapeutic efficacy varies widely between patients in both magnitude and breadth, …

Electrochemical And Mechanical Evaluation Of Cellulose Acetate Electrolyte Films As A Function Of Polyetherimide And Polyethylene Glycol Additives For Supercapacitor Applications, Chase E. Golden

Chemical Engineering Undergraduate Honors Theses

Polymer electrolytes for supercapacitor applications require a balance between mechanical robustness and electrochemical performance. In this study, cellulose acetate (CA) films were modified with additives such as polyetherimide (PEI) and polyethylene glycol (PEG) to test how compositional changes influence mechanical performance, ionic conductivity, and electrochemical charge storage. Films were cast using phase inversion, soaked in a 1 M NaCl aqueous solution, and characterized using Fourier-transform infrared spectroscopy (FTIR), electrochemical impedance spectroscopy (EIS), cyclic voltammetry (CV), and tensile testing. Films were also evaluated based on fluid uptake for insight into electrolyte retention.

Characterizations show that the addition of PEI increased ionic …

Design Of Aluminum-Air Battery Systems And Optimization Of Cetyltrimethylammonium Bromide And 8-Hydroxyquinoline Additives In Alkaline Electrolytes, Steve Chen

Chemical Engineering Undergraduate Honors Theses

The first portion of this thesis focuses on the design and component optimization of aluminum-air batteries to power a car for the Chem-E-Car competition. A range of separators, cathodes, and current collectors was evaluated to determine the optimal configuration for maximizing output. The resulting system consisted of 1000 series aluminum as the anode, cellulose separators saturated in 1 M potassium hydroxide as the electrolyte, and composite PVDF and graphite as the cathode. The improved batteries achieved a power density of 2.14 x 10^-4 W/cm² and were utilized for the Chem-E-Car competition. The second portion of the thesis investigates …

Spectral Characterization Of Colorectal Cancer Using Excitation-Scanning Hyperspectral Imaging, Natalie Hadad

Honors Theses

Colorectal cancer is one of the most common and deadly cancers worldwide, with a lifetime risk of approximately one in twenty-three for men and one in twenty-five for women. Although early detection significantly improves survival, current diagnostic approaches such as tissue biopsy are invasive, reliant on subjective interpretation, have extended turnaround times, and risk missing flat or depressed lesions that are more difficult to detect than raised polyps. These limitations highlight the need for objective, minimally invasive technologies capable of detecting early tissue changes. This study investigates excitation-scanning hyperspectral imaging (Ex-HSI) as a label-free optical approach for identifying colorectal cancer–associated …

An Efficient Implementation Of Gibbs-Duhem Integration For Solid-Liquid Phase Coexistence In Binary Lennard-Jones System With Relevance To Aav Capsid Separation, Muhi Muntaka

Graduate Theses and Dissertations

Gene therapy using adeno-associated viruses (AAVs) holds promise for treating genetic diseases, but high manufacturing costs limit its widespread use. A major challenge is separating functional (full) AAV capsids from non-functional (empty) ones, which are produced in similar amounts and have nearly identical structures. Conventional purification methods, such as density gradient ultracentrifugation and chromatography, face drawbacks like low yield, poor scalability, and high cost, often requiring multi-step processes. Recently, selective crystallization has emerged as a promising alternative, offering improved efficiency, scalability, and product quality. However, optimizing this method requires a deep understanding of thermodynamic phase behavior in multicomponent systems. In …

Assessment Of Lake Water Quality Parameters Using Uav Hyperspectral Imaging, Hasanul Banna, Taufiqa Tajnin

Publications and Research

Monitoring water quality in lakes is critical for assessing ecosystem health, managing drinking water resources, and detecting harmful algal blooms. Unmanned Aerial Vehicle (UAV)–based hyperspectral imaging provides a promising approach for high-resolution observation of water quality parameters. In this undergraduate research project, hyperspectral imagery collected over sample lakes within the Delaware River Watershed was processed using BaySpec’s CubeStitcher software to assess its capability to detect variations in chlorophyll-a (Chl-a) concentrations. This work was conducted as part of a National Fish and Wildlife Foundation (NFWF)-funded project in collaboration with Princeton Hydro and NYC College of New York. Hyperspectral image cubes were …

Versatile Exoskeleton Control Paradigms For Agile Human Locomotion: Task-Agnostic And Stability-Augmented Assistance, Miao Yu

All Dissertations

Lower-limb exoskeletons have shown great potential for assisting human locomotion, but designing controllers that provide assistance across diverse locomotor tasks and under external perturbations remains a major challenge. Many existing controllers for steady-state walking rely on pre-defined reference trajectories, which constrain voluntary human motion and limit adaptability across tasks. Moreover, they usually assume stable walking, while their performance under unstable conditions remains largely unexplored. In addition, existing gait stability augmentation controllers are often reactive rather than proactive to unstable conditions. In this dissertation, we propose control frameworks that preserve voluntary human motion while addressing two major challenges: providing task-agnostic assistance …

A New Electroencephalography Electrode Design For Curly And Kinky Hair Types, Elena Butler

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Medical discrimination and implicit bias are present in both societal systems and into the design and validation of medical devices. Traditional electroencephalography (EEG) systems often fail to provide reliable physiological recordings on curly and kinky hair types (3B–4C), associated typically with Black American and others of African descent. EEG on these hair types often results in high electrode-scalp impedance, poor signal quality, and participant discomfort. Consequently, such technical biases contribute to the underrepresentation of these populations in neuroscience research and clinical diagnostics, while simultaneously limiting equitable access to EEG-based medical care.

To address this gap, a novel conductive electrode attachment …

Beyond Local Pathology: Exploring The Role Of Gut Microbiota In Chronic Low Back Pain Using An Integrated Behavioral And Microbiological Approach, Adan L. Redwine

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Chronic low back pain (LBP) affects millions worldwide, often originating from intervertebral disc (IVD) degeneration. While the gut microbiome modulates musculoskeletal pain, prior studies of the gut-disc axis have focused entirely on structural changes. This leaves a critical gap: does the microbiome influence the experience of discogenic pain? To answer this, an integrated approach using longitudinal gut microbiome profiling, machine learning-based behavioral phenotyping, and structural disc assessments in a rat model of discogenic LBP was utilized.

Female Sprague Dawley rats underwent one of four conditions: sham surgery, IVD injury, antibiotic-mediated microbiome depletion + IVD injury, or IVD injury + treatment …

Aircraft Fault Detection Via Weight And Bias Analysis Of A Custom First Neural Network Layer, George Harrison Chen

Theses and Dissertations

Fault detection in aircraft is traditionally handled through redundant hardware and comparison algorithms to detect failures. Alternatives like model-based residual generation and data-driven approaches such as supervised fault classification and unsupervised anomaly detection have been explored, but they suffer from practical limitations; model-based methods require accurate system models, and data-driven methods have large constraints on the data limiting scalability and adaptability. This work presents a purely data-driven neural network architecture featuring a custom first layer designed for real-time fault detection where the weights and biases of this layer are used to detect faults. The network requires zero supervision and complements …

Moon Adaptive Technology For Extraterrestrial Architectural Robotics (Matear), Candela Noemi Solis Zampini

Theses and Dissertations

The Moon Adaptive Technology for Extraterrestrial Architectural Robotics (MATEAR) focuses on the development of an autonomous robotic system capable of providing structural building blocks directly from lunar regolith. As a sustained human presence on the Moon becomes a necessity, the costly and limited payload capacity associated with transporting construction goods from Earth creates a critical challenge. MATEAR addresses this problem through in-situ resource utilization (ISRU), integrating a regolith processing system onto a remote operated vehicle. The proposed system is designed to collect lunar dust, mechanically compact the material, and apply thermal treatment to enhance cohesion through sintering. These regolith-made bricks …

Preclinical Animal Modeling To Investigate Redox-Mediated Molecular Dysfunction In Traumatic Brain Injury, Brandon Z. Mcdonald

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Impacts associated with traumatic brain injury (TBI) induce a multitude of neurological morbidities mediated by a spread of biochemical dysfunction. Redox stress is a significant contributor to TBI pathophysiology and several redox stress markers have substantial evidence to support their role in diagnosing preclinical and clinical TBI. However, there is a critical need to verify their translational utility through correlations with behavioral, imaging, and molecular modalities. In chapter two, we examined the therapeutic efficacy of an antioxidant treatment (NPC3) using a controlled cortical impact (CCI) mouse model of TBI. NPC3 alleviated glial expression and reactivity while influencing the expression of …

Engineering Silicone Magnetic Fluids For Localized Radiation Attenuation During Ocular Melanoma Brachytherapy, Zachary L. Caprow

All Dissertations

Ocular melanoma is commonly treated using plaque brachytherapy; however, radiation-induced damage to healthy ocular tissues frequently results in partial or complete vision loss. This work investigates the development of an injectable, magnetically responsive silicone magnetic fluid designed to localize adjacent to the tumor and attenuate low-energy gamma radiation during treatment.

The material system consists of iron oxide nanoparticles surface-functionalized with a siloxane polymer, in which the nanoparticles provide magnetic responsiveness and radiation attenuation, while the polymer coating ensures colloidal stability, injectability, and biocompatibility. A one-pot synthetic approach was developed wherein a functionalized siloxane polymer containing iron-affinitive groups was reacted with …

Impact Of Biomass Type On Hydrocarbon Yield And Chain Length Distribution Produced Via Fischer-Tropsch Synthesis, Nicholas R. Hawe

Honors Scholar Theses

This paper investigates the relationship between biomass composition and hydrocarbon yield as well as chain length distribution produced by Fischer-Tropsch synthesis. Through an Aspen Plus model, the conversion of three different biomasses – digestate, sawdust, and corn stover – into hydrocarbon fuel was simulated. The model converts biomass into gaseous and liquid hydrocarbons via various unit operations and reactions. Simulation results highlight the product distribution and hydrocarbon output, allowing for an analysis of hydrocarbon yield and comparison of chain length distributions amongst the three biomasses. Overall, the simulation showed biomass composition had no significant impact on hydrocarbon yield or chain …

Spatial And Seasonal Concentrations Of Atmospheric Halogens Around The Great Salt Lake (2023/2024), Himalaya Sapkota

All Graduate Theses and Dissertations, Fall 2023 to Present

The Great Salt Lake (GSL), located in northern Utah, is one of the world's saltiest lakes and an essential resource for industry. It is also a significant hotspot for halogen emissions, including chlorine (Cl) and bromine (Br) from both natural and human sources. Although their concentrations in the atmosphere are low, they influence tropospheric chemistry by forming criteria pollutants such as ozone and particulate matter. These pollutants are detrimental to air quality, impacting public health and property. This study investigates the spatial and seasonal variability of halogen species (gas- and particulate-phase of Cl and Br) in the Northern Wasatch Front …