Digital Commons Network^™

Development Of Load Balancing Algorithm Based On Analysis Of Multi-Core Architecture On Beowulf Cluster, Damian Valles

Open Access Theses & Dissertations

In this work, analysis, and modeling were employed to improve the Linux Scheduler for HPC use. The performance throughput of a single compute-node of the 23 node Beowulf cluster, Virgo 2.0, was analyzed to find bottlenecks and limitations that affected performance in the processing hardware where each compute-node consisted of two quad-core processors with eight gigabytes of memory. The analysis was performed using the High Performance Linpack (HPL) benchmark.

In addition, the processing hardware of the compute-node was modeled using an Instruction per Cycle (IPC) metric that was estimated using linear regression. Modeling data was obtained by using the Tuning …

Implications Of Surface Runoff Recharge In Semi-Arid Regions On Groundwater Sustainability, Omar M. Al-Qudah

Open Access Theses & Dissertations

Amargosa Desert, Nevada regional groundwater studies show that the surface runoff infiltration occurring in the arroyos following runoff producing storms, and this infiltration is considered to be a major source of groundwater recharge. Groundwater infiltration through alluvium was investigated in the Amargosa Desert using borehole drill cuttings, groundwater chemistry, and applying a novel method for collecting runoff water. The sampling process included sediment, precipitation, and runoff water. In total, 176 runoff, 182 sediment, and 45 precipitation samples were collected between January, 2009 and January, 2011.Water chemistry, chloride concentrations, and stable isotopes of water collected from specially designed runoff samplers, placed …

Effects Of The Usage Of Parallel Hardware Architectures In The Simulation Of Artificial Neural Networks Training Process, Carlos Beas

Open Access Theses & Dissertations

Long training times and non-ideal performance have been a big impediment in further continuing the use of Artificial Neural Networks for real world applications. Current research is currently focused on two areas of study that aim to address this problem. The first approach seeks to overcome large training times by devising faster learning algorithms where a set of interconnection weights for which the network produces negligible error takes a less amount of computation to find [Sun98]. The second approach aims to address the impediment by implementing existing training algorithms but on parallel hardware architectures.

While both approaches provide promising advances …

Bioprinting Oxygen Releasing Microparticles For Improved Cell Tissue Viability, Daniel Reyna

Open Access Theses & Dissertations

A major challenge in regenerative medicine/tissue engineering is the difficulty of providing adequate oxygen to all cells within implanted engineered tissues before full vascularization is achieved. To overcome this limitation, a variety of oxygen-releasing particles have been developed to improve cell and tissue survival. However, most of these particles are used in random mixtures within scaffolding materials, which usually leads to an uneven distribution of oxygen in bioengineered tissues. An ideal oxygen supply requires a precise depositing control of oxygen-releasing particles in scaffolds. Cell bioprinting is a novel tissue fabrication approach, in which the bio-printer can be programmed to deposit …

Algorithms For Training Large-Scale Linear Programming Support Vector Regression And Classification, Pablo Rivas Perea

Open Access Theses & Dissertations

The main contribution of this dissertation is the development of a method to train a Support Vector Regression (SVR) model for the large-scale case where the number of training samples supersedes the computational resources. The proposed scheme consists of posing the SVR problem entirely as a Linear Programming (LP) problem and on the development of a sequential optimization method based on variables decomposition, constraints decomposition, and the use of primal-dual interior point methods. Experimental results demonstrate that the proposed approach has comparable performance with other SV-based classifiers. Particularly, experiments demonstrate that as the problem size increases, the sparser the solution …

The Synthesis And Host-Guest Applications Of Synthetic Receptor Molecules, Zachary Richard Osner

Dissertations

Host-guest chemistry involves the complimentary binding between two molecules. Host molecules have been synthesized to bind negative, positive, and neutral molecules such as proteins and enzymes, and have been used as optical sensors, electrochemical sensors, supramolecular catalysts, and in the pharmaceutical industry as anti-cancer agents.1 The field of nanoscience has exploited guest-host interactions to create optical sensors with colloidal gold and Dip-Pen nanolithography technologies. Gold nanoparticles, have been functionalized with DNA, and have been developed as a selective colorimetric detection system, that upon binding turns the solution from a red to blue in color.2

Cyclotriveratrylene (CTV) 1 is a common …

Robotic Hand Evaluation Based On Task Specific Kinematic Requirements, Carlos Rafael Neninger

USF Tampa Graduate Theses and Dissertations

With the rise autonomous and robotic systems in field applications, the need for dexterous, highly adaptable end effectors has become a major research topic. Control mechanisms of robotics hands with a high number independent actuators is recognized as a complex, high dimensional problem, with exponentially complex algorithms. However, recent studies have shown that human hand motion possesses very high joint correlation which translates into a set of predefined postures, or synergies. The hand produces a motion using a complementing contribution of multiple joints, called synergies. The similarities place variables onto a common dimensional space, effectively reducing the number of independent …

Fabrication And Characterization Of Electrospun Cactus Mucilage Nanofibers, Yanay Pais

USF Tampa Graduate Theses and Dissertations

This work seeks to fabricate, optimize, and characterize nanofibers of cactus Opuntia ficus-indica mucilage and Poly (vinyl alcohol) (PVA) by electrospinning. Mucilage is a neutral mixture of sugars produced by cactus and PVA is a non-toxic, water-soluble, synthetic polymer, which is widely used as a co-spinning agent for polymers. Mucilage was extracted from the cactus pad and prepared for electrospinning by mixing with acetic acid. Two types of PVA were used differentiating in high and low molecular weights. Concentrations of PVA were varied to find an adequate threshold for fiber formation. Changing the ratio of PVA to cactus mucilage produced …

Special Issue On Wireless Sensor And Actuator Networks, Jiming Chen, Karl H. Johanson, Stephan Olariu, Ioannis Ch. Paschalidis, Ivan Stojmenovic

Computer Science Faculty Publications

( First paragraph) WIRELESS Sensor Networks (WSNs), in their various shapes and forms, have greatly facilitated and enhanced the automated, remote, and intelligent monitoring of a large variety of physical systems. These networks consist of a large number of typically small devices, each incorporating sensing, processing, and wireless communications capabilities. Their use has penetrated a plethora of application domains from industrial and building automation, to environmental, wildlife, and health monitoring.

Initial Design, Manufacture, And Testing Of A Cubelab Module Frame For Biological Payloads Aboard The International Space Station, Twyman Samuel Clements

University of Kentucky Master's Theses

This thesis investigates the design of a CubeLab Module frame to facilitate biological research aboard the International Space Station (ISS). With the National Laboratory designation of the ISS by the United States Congress the barriers for use of the facility have been lowered for commercial and academic entities, allowing greater volume and diversity in the research that can be done. Researchers in biology and other areas could benefit from development and adoption of a plug-and-play payload containment system for use in the microgravity/space environment of the ISS. This research includes design and analysis of such a system. It also includes …

Instrument Independent Diffuse Reflectance Spectroscopy, Bing Yu, Henry L. Fu, Nirmala Ramanujam

Biomedical Engineering Faculty Research and Publications

Diffuse reflectance spectroscopy with a fiber optic probe is a powerful tool for quantitative tissue characterization and disease diagnosis. Significant systematic errors can arise in the measured reflectance spectra and thus in the derived tissue physiological and morphological parameters due to real-time instrument fluctuations. We demonstrate a novel fiber optic probe with real-time, self-calibration capability that can be used for UV-visible diffuse reflectance spectroscopy in biological tissue in clinical settings. The probe is tested in a number of synthetic liquid phantoms over a wide range of tissue optical properties for significant variations in source intensity fluctuations caused by instrument warm …

Phytoforensic Tools: Directional Uptake Of Chlorinated Solvents, Matthew Alan Limmer

Masters Theses

"Trees have been used to locate contaminated soil and groundwater, augmenting traditional methods, such as well drilling, that are time-consuming and expensive. In the past decade, plant sampling has gained acceptance as a reliable method for site screening. In this new field of phytoforensics, research efforts focus on developing quicker, more accurate and more informative sampling and analysis methods for measuring contaminant concentrations in trees. These phytoforensic tools are a novel approach to site assessments, potentially reducing cost while more effectively locating contaminated groundwater. This thesis evolved from field data suggesting azimuthal concentrations in tree trunks may reflect the corresponding …

Mercury Blastn Biosequence Similarity Search System: Technical Reference Guide, Jeremy Buhler

All Computer Science and Engineering Research

This guide documents the operation of the Mercury BLASTN system for hardware-accelerated DNA similarity search. It includes detailed information on the syntax and limitations of the system's component commands, as well as a description of the system's hardware platform suitable for administrators who need to maintain a Mercury BLASTN system. Mercury BLASTN is a product of the High Performance COmputational Biology Group at Washington University.

Mechanistic Modeling Of Photocatalytic Water Disinfection, Omatoyo Kofi Dalrymple

USF Tampa Graduate Theses and Dissertations

The main goal of this research was to develop a mechanism-based model for photocatalytic disinfection of bacteria in water using suspended catalyst pthesiss in batch reactors. The photocatalytic disinfection process occurs as a semiconductor photocatalyst, most commonly titanium dioxide (TiO₂), is irradiated with light of wavelength less than 380 nm to produce hydroxyl radicals and other highly reactive oxidants which can inactivate microorganisms. Photocatalytic disinfection involves a complex interaction of many fundamental mechanisms such as light absorption and scattering by semiconductor pthesiss, electrochemical surface reactions, and heterogeneous colloidal stability. Current models, based largely on chemical reacting systems, do …

Regulation Of Cell Adhesion Strength By Spatial Organization Of Focal Adhesions, Kranthi Kumar Elineni

USF Tampa Graduate Theses and Dissertations

Cell adhesion to extracellular matrix (ECM) is critical to various cellular processes like cell spreading, migration, growth and apoptosis. At the tissue level, cell adhesion is important in the pathological and physiological processes that regulate the tissue morphogenesis. Cell adhesion to the ECM is primarily mediated by the integrin family of receptors. The receptors that are recruited to the surface are reinforced by structural and signaling proteins at the adhesive sites forming focal adhesions that connect the cytoskeleton to further stabilize the adhesions. The functional roles of these focal adhesions extend beyond stabilizing adhesions and transduce mechanical signals at the …

Sequential Anaerobic And Algal Membrane Bioreactor (A2mbr) System For Sustainable Sanitation And Resource Recovery From Domestic Wastewater, Ana Lucia Prieto

USF Tampa Graduate Theses and Dissertations

An innovative wastewater treatment technology was developed to recover renewable resources, such as water, energy and nutrients, from sewage. First, a novel synthetic sewage was evaluated for its suitability to serve as an alternative substrate for lab-scale wastewater treatment (WWT) research. Based on granular dried cat food, Complex Organic Particulate Artificial Sewage (COPAS) is a commercially-available, flexible, and easy to preserve feed. Characteristics of COPAS, namely chemical composition, disintegration/dissolution kinetics, and anaerobic biodegradability, were determined. Anaerobic bioassays indicate that COPAS is highly biodegradable at the concentration used to simulate household sewage (1000 mg/L), with more than 72% of the theoretical …

Biological Effective Dose (Bed) Distribution Matching For Obtaining Brachytherapy Prescription Doses & Dosimetric Optimization For Hybrid Seed Brachytherapy, Jakub Pritz

USF Tampa Graduate Theses and Dissertations

Radioactive seed implant brachytherapy is a common radiotherapy treatment method for prostate cancer. In current clinical practice, a seed consists of a single isotope, such as ¹²⁵I or ¹⁰³Pd. A seed containing a mixture of two isotopes has been proposed for prostate cancer treatment. This study investigates a method for defining a prescription dose for new seed compositions based on matching the biological equivalent dose (BED) of a reference plan.

Ten prostate cancer cases previously treated using single isotope seeds (5 using ¹²⁵I seeds and 5 using ¹⁰³Pd seeds) were selected for this study. Verification of …

Pilot Assessment Of Novel Membrane Bioreactor Processes - Improvements In Biological Nutrient Removal And Membrane Operation, Shaleena Smith

USF Tampa Graduate Theses and Dissertations

With increasing water reuse applications and upcoming stringent regulations for treated wastewater effluent discharge, wastewater plants need to consider alternative technologies beyond conventional treatment processes. The new regulations, Numeric Nutrient Criteria (NNC), may regulate discharge nitrogen and phosphorus concentrations to as low as 0.5 mg/L as N and 10 μg/L as P respectively. To meet these target requirements, system retrofitting to incorporate chemical or advanced nutrient removal systems possibly with membrane technology will most likely be required. Although microfiltration/ultrafiltration membranes coupled with biological processes, otherwise known as membrane bioreactors (MBR), remove contaminants and suspended solids, nutrient removal is minimal to …

Two-Dimensional Computer Model Of Human Atrial Ablation, Samineh R. Esfahani

USF Tampa Graduate Theses and Dissertations

A finite-element model of a two-dimensional slice of human atrial tissue for the study of the electrograms and propagation of action potentials is presented. Action potential propagation is described by a reaction-diffusion model coupled with the complex Courtemanche et al. atrial cell model. The effects of recording electrode size and location on electrograms are presented. Action potential propagation as a result of atrial fibrillation ablation therapy is also modeled by defining a lesion area with decreased electrical conductivity. The effect of electrical conductivity and geometry of the lesion was also studied. It is shown that the success rate of atrial …

Cactus Mucilage-Assisted Heavy Metal Separation: Design And Implementation, Dawn Iona Fox

USF Tampa Graduate Theses and Dissertations

Natural contamination of groundwater by arsenic (As) has become a critical public health threat in many parts of the world. The well-known regions associated with As contamination of groundwater are Bangladesh and West Bengal, India where approximately 100 million people are exposed to high levels of arsenic by drinking arsenic-contaminated groundwater and about 35 million are already affected. Long-term drinking of arsenic-contaminated water leads to arsenicosis, which is characterized by cancers of the skin, organ disease and certain other types of cancer. Affected developing communities are at higher risk because they may not have access to conventional water treatment facilities. …

Diamond Based-Materials: Synthesis, Characterization And Applications, Qiang Hu

USF Tampa Graduate Theses and Dissertations

The studies covered in this dissertation concentrate on the various forms of diamond films synthesized by chemical vapor deposition (CVD) method, including microwave CVD and hot filament CVD. According to crystallinity and grain size, a variety of diamond forms primarily including microcrystalline (most commonly referred to as polycrystalline) and nanocrystalline diamond films, diamond-like carbon (DLC) films were successfully synthesized. The as-grown diamond films were optimized by changing deposition pressure, volume of reactant gas hydrogen (H2) and carrier gas argon (Ar) in order to get high-quality diamond films with a smooth surface, low roughness, preferred growth orientation and high sp3 bond …

Self-Alignment Of Silicon Microparts On A Hexadecane-Water Interface By Surface Tension, Caroline Elizabeth Liberti

USF Tampa Graduate Theses and Dissertations

Mechanical assembly of systems and structures on the micro-scale can be inefficient as particles of sub-millimeter dimensions are difficult to manipulate. Cutting edge manufacturing methods implement self-assembly as an approach to ordering micro and nano-sized parts into a desired arrangement. This thesis studies a technique utilizing surface tension as a method of actuating microparts on a liquid-liquid interface via lateral capillary interactions. Preliminary experimentation is conducted to investigate the feasibility of developing a new method for self-alignment of microparts by observing the influence of interfacial geometry on the movement of silicon tiles along a hexadecanewater interface. Different surface geometries are …

Nano-Electromechanical Zero-Dimensional Freestanding Nanogap Actuator, Jun Hyun Han, Norimasa Yoshimizu, T.J. Cheng, Michael Ziwisky, S.A. Bhave, A. Lal, Chung-Hoon Lee

Electrical and Computer Engineering Faculty Research and Publications

Micromachined free standing nanogap with metal electrodes is presented. The gap size is as small as 17 nm, and can be reduced further with electrostatic or piezoelectric actuation. The nanoscale gap is fabricated by industrial standard optical lithography and anisotropic wet chemical Si etching. Electron transport between the metal electrodes with optical stimulus enhancing photon-electron coupling (plasmon) is presented.

Simulation And Control Of A Quadrotor Unmanned Aerial Vehicle, Michael David Schmidt

University of Kentucky Master's Theses

The ANGEL project (Aerial Network Guided Electronic Lookout) takes a systems engineering approach to the design, development, testing and implementation of a quadrotor unmanned aerial vehicle. Many current research endeavors into the field of quadrotors for use as unmanned vehicles do not utilize the broad systems approach to design and implementation. These other projects use pre-fabricated quadrotor platforms and a series of external sensors in a mock environment that is unfeasible for real world use. The ANGEL system was designed specifically for use in a combat theater where robustness and ease of control are paramount. A complete simulation model of …

High Performance Piezoelectric Materials And Devices For Multilayer Low Temperature Co-Fired Ceramic Based Microfluidic Systems, Wenli Zhang

University of Kentucky Doctoral Dissertations

The incorporation of active piezoelectric elements and fluidic components into micro-electromechanical systems (MEMS) is of great interest for the development of sensors, actuators, and integrated systems used in microfluidics. Low temperature cofired ceramics (LTCC), widely used as electronic packaging materials, offer the possibility of manufacturing highly integrated microfluidic systems with complex 3-D features and various co-firable functional materials in a multilayer module. It would be desirable to integrate high performance lead zirconate titanate (PZT) based ceramics into LTCC-based MEMS using modern thick film and 3-D packaging technologies. The challenges for fabricating functional LTCC/PZT devices are: 1) formulating piezoelectric compositions which …

Studies On Silicon Nmr Characterization And Kinetic Modeling Of The Structural Evolution Of Siloxane-Based Materials And Their Applications In Drug Delivery And Adsorption, Jyotrhirmai Ambati

University of Kentucky Doctoral Dissertations

This dissertation presents studies of the synthetic processes and applications of siloxane-based materials. Kinetic investigations of bridged organoalkoxysilanes that are precursors to organic-inorganic hybrid polysilsesquioxanes are a primary focus. Quick gelation despite extensive cyclization is found during the polymerization of bridged silane precursors except for silanes with certain short bridges. This work is an attempt to characterize and understand some of the distinct features of bridged silanes using experimental characterization, kinetic modeling and simulation. In addition to this, the dissertation shows how the properties of siloxane- materials can be engineered for drug delivery and adsorption.

The phase behavior of polymerizing …

Fabrication And Study Of Molecular Devices And Photovoltaic Devices By Metal/Dielectric/Metal Structures, Bing Hu

University of Kentucky Doctoral Dissertations

A new class of electrodes with nanometer-scale contact spacing can be produced at the edge of patterned metal/insulator/metal this film structures. A key challenge is to produce insulator layers with low leakage current and have pristine metal contacts for controlled molecular contacts. Atomic layer deposition of high quality Al₂O₃ thin films onto Au electrodes was enabled by surface modification with a self-assembled monolayer of -OH groups that react with a monolayer of trimethylaluminum gas source. Ar ion milling was then used to expose the edge of the Au/dielectric/Au structure for molecular electrode contacts. The junctions are characterized …

Artificial Neural Network Based Fault Location For Transmission Lines, Suhaas Bhargava Ayyagari

University of Kentucky Master's Theses

This thesis focuses on detecting, classifying and locating faults on electric power transmission lines. Fault detection, fault classification and fault location have been achieved by using artificial neural networks. Feedforward networks have been employed along with backpropagation algorithm for each of the three phases in the Fault location process. Analysis on neural networks with varying number of hidden layers and neurons per hidden layer has been provided to validate the choice of the neural networks in each step. Simulation results have been provided to demonstrate that artificial neural network based methods are efficient in locating faults on transmission lines and …

Particulate Organic Carbon Fate And Transport In A Lowland, Temperate Watershed, William Isaac Ford Iii

University of Kentucky Master's Theses

Small lowland agricultural systems promote conditions where benthic biological communities can thrive. These biogeochemical processes have significant impacts on terrestrial ecosystem processes including POC flux and fate, nutrient balances, water quality budges, and aquatic biological functioning. Limited information is available on coupled biological and hydrologic processes in fluvial systems. This study investigates the mixture of biological and hydrologic processes in the benthic layer in order to understand POC cycling in the South Elkhorn system. Further, comprehensive modeling of POC flux in lowland systems has not been performed previously and the behavior of potentially controlling variables, such as hydrologic forcing and …

Modeling And Quantitative Analysis Of White Matter Fiber Tracts In Diffusion Tensor Imaging, Xuwei Liang

University of Kentucky Doctoral Dissertations

Diffusion tensor imaging (DTI) is a structural magnetic resonance imaging (MRI) technique to record incoherent motion of water molecules and has been used to detect micro structural white matter alterations in clinical studies to explore certain brain disorders. A variety of DTI based techniques for detecting brain disorders and facilitating clinical group analysis have been developed in the past few years. However, there are two crucial issues that have great impacts on the performance of those algorithms. One is that brain neural pathways appear in complicated 3D structures which are inappropriate and inaccurate to be approximated by simple 2D structures, …