Digital Commons Network^™

Image-Guided Robotic Dental Implantation With Natural-Root-Formed Implants, Xiaoyan Sun

Electrical & Computer Engineering Theses & Dissertations

Dental implantation is now recognized as the standard of the care for tooth replacement. Although many studies show high short term survival rates greater than 95%, long term studies (> 5 years) have shown success rates as low as 41.9%. Reasons affecting the long term success rates might include surgical factors such as limited accuracy of implant placement, lack of spacing controls, and overheating during the placement.

In this dissertation, a comprehensive solution for improving the outcome of current dental implantation is presented, which includes computer-aided preoperative planning for better visualization of patient-specific information and automated robotic site-preparation for superior …

Nonosecond Pulsed Electric Field Induced Changes In Dielectric Properties Of Biological Cells, Jie Zhuang

Electrical & Computer Engineering Theses & Dissertations

Nanosecond pulsed electric field induced biological effects have been a focus of research interests since the new millennium. Promising biomedical applications, e.g. tumor treatment and wound healing, are emerging based on this principle. Although the exact mechanisms behind the nanosecond pulse-cell interactions are not completely understood yet, it is generally believed that charging along the cell membranes (including intracellular membranes) and formation of membrane pores trigger subsequent biological responses, and the number and quality of pores are responsible for the cell fate. The immediate charging response of a biological cell to a nanosecond pulsed electric field exposure relies on the …

Geometrical Considerations For The Design Of Liquid-Phase Biochemical Sensors Using A Cantilever's Fundamental In-Plane Mode, L. A. Beardslee, Fabien Josse, Stephen M. Heinrich, I. Dufour, O. Brand

Electrical and Computer Engineering Faculty Research and Publications

The influence of the beam geometry on the quality factor and resonance frequency of resonant silicon cantilever beams vibrating in their fundamental in-plane flexural mode in water has been investigated. Compared to cantilevers vibrating in their first out-of-plane flexural mode, utilizing the in-plane mode results in reduced damping and reduced mass loading by the surrounding fluid. Quality factors as high as 86 have been measured in water for cantilevers with a 20 μm thick silicon layer. Based on the experimental data, design guidelines are established for beam dimensions that ensure maximal Q-factors and minimal mass loading by the surrounding …

Blood Flow Through The Aorta In A Mouse Model Of Atherosclerosis, J. Hough, P. Assemat, K.K.W. Siu, J.A. Armitage, K. Contreras, A. Aprico, A. Dart, J. Ching-Dusting, K. Hourigan

Computational Fluid Dynamics (CFD) in Medicine And Biology in Conjunction With the Seventh International Biofluid Mechanics Symposium

No abstract provided.

Image-Based Vs. Patient-Specific What Is The Difference, And Does It Matter?, David Steinman

Computational Fluid Dynamics (CFD) in Medicine And Biology in Conjunction With the Seventh International Biofluid Mechanics Symposium

No abstract provided.

Whole-Genome Resequencing Of Two Elite Sires For The Detection Of Haplotypes Under Selection In Dairy Cattle Supporting Information, Denis M. Larkin, Hans D. Daetwyler, Alvaro G. Hernandez, Chris L. Wright, Lorie A. Hetrick, Lisa Boucek, Sharon Bachman, Jyothi Thimmapuram

Cyber Center Publications

Using a combination of whole-genome resequencing and high-density genotyping arrays, genome-wide haplotypes were reconstructed for two of the most important bulls in the history of the dairy cattle industry, Pawnee Farm Arlinda Chief (“Chief”) and his son Walkway Chief Mark (“Mark”), each accounting for ∼7% of all current genomes. We aligned 20.5 Gbp (∼7.3× coverage) and 37.9 Gbp (∼13.5× coverage) of the Chief and Mark genomic sequences, respectively. More than 1.3 million high-quality SNPs were detected in Chief and Mark sequences. The genome-wide haplotypes inherited by Mark from Chief were reconstructed using ∼1 million informative SNPs. Comparison of a set …

Development And Application Of An F/M Based Anaerobic Digestion Model And The Rt-Ribosyn Molecular Biology Method, Matthew Raymond Cutter

USF Tampa Graduate Theses and Dissertations

A simple anaerobic digestion model has been developed for a continuously-stirred tank reactor (CSTR), which links the specific biogas production rate to the food/microorganism ratio (F/M). The model treats the various microbial populations involved in the sequential biological processes involved in anaerobic digestion as a composite and links the entire biomass specific growth rate directly to the specific biogas production rate. The model was calibrated by determining the specific gas production rate for a range of F/M values using a municipal wastewater seed sludge. The model predictions for steady-state biogas production rates were compared to observed biogas production and volatile …

Evaluation Of The Thorax Of Manduca Sexta For Flapping-Wing Micro Air Vehicle Applications, Alex C. Hollenbeck

Theses and Dissertations

The tobacco hornworm hawkmoth (Manduca sexta) provides an excellent model from which to garner knowledge pertaining to the development of a Flapping Wing Micro Air Vehicle (FWMAV). Insect-sized FWMAVs will be used by the future warfighter for reconnaissance, nuclear/chemical/biological hazard sensing, and targeting. One of the major challenges facing FWMAV developers is the energetically demanding nature of low Reynolds flapping flight. Investigating the Manduca sexta thorax/wing flapping mechanism as a mechanical system will provide insight into its inherent efficiency. This thesis examined the energetics of the thorax under static loading and dynamic loading using an innovative load-application technique. It was …

Local Histograms For Per-Pixel Classification, Melody L. Massar

Theses and Dissertations

We introduce a rigorous mathematical theory for the analysis of local histograms, and study how they interact with textures that can be modeled as occlusions of simpler components. We first show how local histograms can be computed as a system of convolutions and discuss some basic local histogram properties. We then introduce a probabilistic, occlusion-based model for textures and formally demonstrate that local histogram transforms are natural tools for analyzing the textures produced by our model. Next, we characterize all nonlinear transforms which satisfy the three key properties of local histograms and consider the appropriateness of local histogram features in …

Hybrid Bioreactor For Reduction Of Capital Costs, David J. Bayless

Mechanical and Aerospace Engineering Faculty Research & Creative Works

A bioreactor with first and second containers has translucent sidewalls housing a plurality of planar membranes over which a slurry of water and photosynthetic microorganisms flows. A light collector is mounted adjacent a gap between the first and second containers for receiving incident light and conveying the light through optical waveguides, such as fibers, to distributors. The distributors are mounted in the first and second containers near a lower end of the substrates so that photons incident on the optical waveguides are conveyed through the optical waveguides to the light distributors and then to the lower ends of the substrates …

Evaluation Of Municipal Wastewater Treatment Plant Activated Sludge For Biodegradation Of Propylene Glycol As An Aircraft Deicer, Justin D. Delorit

Theses and Dissertations

Aircraft deicing fluid used at airport facilities is often collected for treatment or disposal in order to prevent serious ecological threats to nearby surface waters. This study investigated lab scale degradation of propylene glycol (PG), the active ingredient in a common aircraft deicing fluid, by way of a laboratory-scale sequencing batch reactor containing municipal waste water treatment facility activated sludge (AS) performing simultaneous organic carbon oxidation and nitrification. The ability of AS to remove PG was evaluated by studying the biodegradation and sorption characteristics of PG in an AS medium. The results indicate sorption may play a role in the …

Biodegradation Of Organophosphate Chemical Warfare Agents By Activated Sludge, Steven J. Schuldt

Theses and Dissertations

Organophosphates (OPs) have been widely used as Chemical Warfare Agents (CWAs) as well as pesticides since World War II and still remain a threat to national security. While efforts have been taken at military installations and civilian communities to secure these chemicals and prevent their misuse, a determined adversary could still obtain and deploy them to injure, kill, or instill terror. The lethal properties of this group of compounds are primarily owed to their irreversible inhibition of the enzyme acetyl cholinesterase (AChE) and thus may alter the human nervous system or affect the hormonal balance of children in particular. In …

Stabilizing Acetylcholinesterase On Carbon Electrodes Using Peptide Nanotubes To Produce Effective Biosensors, Todd J. Stevens

Theses and Dissertations

A biosensor for the detection of organophosphates in water was created by immobilizing acetylcholinesterase (AChE) on a carbon screen printed electrode using peptide nanotubes (PNT) and Nafion®. This sensor was used with acetylthiocholine (ASCh) substrate to detect the inhibitory effects of malathion. The stability of the encapsulated enzyme was measured over 50 days of storage at 4°C in a phosphate buffer solution. The oxidation of thiocholine, a product of the enzymatic reaction of ASCh and AChE, was used to measure the activity of the encapsulated enzyme. Cyclic voltammograms were taken in an ASCh and phosphate buffer solution, and the peak …

The Effectiveness Of Using Diversity For Selecting Multiple Classifier Systems, Harris K. Butler

Theses and Dissertations

A wealth of approaches exists to perform classification of items of interest. The goal of fusion techniques is to exploit complementary approaches and merge the information provided by these methods to provide a solution superior than any single method. Associated with choosing a fusion algorithm is the choice of algorithm or algorithms that will be fused. This decision is most often referred to as ensemble selection. Historically classifier ensemble accuracy has been used to accomplish this task. More recently research has focused on creating and evaluating diversity metrics to more effectively select ensemble members. This research focuses on the use …

Enhanced Image-Aided Navigation Algorithm With Automatic Calibration And Affine Distortion Prediction, Juan D. Jurado

Theses and Dissertations

This research aims at improving two key steps within the image aided navigation process: camera calibration and landmark tracking. The camera calibration step is improved by automating the point correspondence calculation within the standard camera calibration algorithm, thereby reducing the required time for calibration while maintaining the output model accuracy. The feature landmark tracking step is improved by digitally simulating affine distortions on input images in order to calculate more accurate feature descriptors for improved feature matching in high relative viewpoint change. These techniques are experimentally demonstrated in an outdoor environment with a consumer-grade inertial sensor and three imaging sensors, …

Computer Aided Multi-Data Fusion Dismount Modeling, Juan L. Morales

Theses and Dissertations

Recent research efforts strive to address the growing need for dismount surveillance, dismount tracking and characterization. Current work in this area utilizes hyperspectral and multispectral imaging systems to exploit spectral properties in order to detect areas of exposed skin and clothing characteristics. Because of the large bandwidth and high resolution, hyperspectral imaging systems pose great ability to characterize and detect dismounts. A multi-data dismount modeling system where the development and manipulation of dismount models is a necessity. This thesis demonstrates a computer aided multi-data fused dismount model, which facilitates studies of dismount detection, characterization and identification. The system is created …

Integration, Testing And Validation, Of A Small Hybrid-Electric Remotely-Piloted Aircraft, Joseph K. Ausserer

Theses and Dissertations

Parallel hybrid-electric technology offers a wide variety of new mission capabilities including low-observable loiter operations and increased fuel efficiency for small remotely-piloted aircraft. This research focused on the integration, validation, and testing of a hybrid-electric propulsion system consisting of commercially available components to fabricate a small remotely-piloted aircraft capable of extended low-observable operation. Three novel aspects contributed to the success of the design: optimization of the propulsive components to the integrated system, torque control of the components for additive power, and a one-way bearing/ pulley mechanism (patent pending) mechanically linking the hybrid system components. To the knowledge of the author …

A Finite Element Analysis Of A Carbon Fiber Composite Micro Air Vehicle Wing, Theodore A. Szelag

Theses and Dissertations

Micro-air vehicles (MAV)s provide a valuable and low observable way to do the jobs that the Air Force deems to be dull, dirty and dangerous. Basing the design of an MAV wing on that of a biological counterpart will provide a proven design that is capable of achieving the mission requirements. This research is designed to analyze the design and manufacturing of a wing based off the Manduca Sexta.

Inaccuracies in the fiber orientation can result in substantial changes in the material properties. Experimental vibration data of composite material samples manufactured using a three-ply [0/90/0] small non-homogenous fiber composite provided …

Combustion Simulations Using Graphic Processing Units, Mingjie Wang

Master's Theses

Graphic processing units (GPUs) are powerful graphics engines featuring high levels of parallelism and extreme memory bandwidth, which constitute a powerful computing platform to solve complex problems involving chemically reacting flows. In the present study, computer programs for combustion simulations with detailed chemical kinetic mechanisms were compiled in the Compute Unified Device Architecture (CUDA) language for NVIDIA GPU architecture. Ignition processes were simulated under constant pressure and constant volume conditions using an explicit 4^th order Runge-Kutta algorithm for time integration. Sufficiently small time steps were identified with time scale analysis to ensure the integration stability. The program was validated …

Poster Session, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Western Kentucky Deep Saline Reservoir CO₂ Storage Test: Shallow Groundwater Monitoring Results, E. Glynn Beck and others, Kentucky Geological Survey
• Baseline Soil Properties of a Central Kentucky Riparian Buffer, Amanda Gumbert and others, Dept of Plant and Soil Science, UK
• The Kentucky Water Well Driller’s Certification Program, Scotty E. Robertson and David A. Jackson, Kentucky Division of Water, Frankfort, KY
• Influences of Cladophora Bloom on the Diets of Amblema plicata and Elliptio dilatata in the Upper Green River, Kentucky, Jennifer M. Yates and others, Dept of Biology, Western Kentucky University
• Using Electrical Resistivity to Locate …

Session 2b, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Agriculture Producer Responses to Government-Funded Conservation Programs to Address Water Quality, Wuyang Hu and others, Dept of Agricultural Economics, UK
• Abatement Costs for Agricultural Non-Point Source Polluters, Jack Schieffer and others, Dept of Agricultural Economics, UK
• Point Source Polluters in the Kentucky River Watershed and the Potential for Water Quality Trading, Ron Childress and others, Dept of Agricultural Economics, UK
• Point Source Abatement Costs and Preferences for Trading Market Mechanisms in the Kentucky River Watershed, Andrew McLaughlin and others, Dept of Agricultural Economics, UK

Session 2a, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• The Potential for Using a P Loss Model to Improve the Accuracy of the Kentucky Phosphorus Index, Carl H. Bolster, USDA-ARS, Bowling Green, KY
• Additive State Space Model – A Promising Approach to Water- Quality-Related Treatment Experiments in Heterogeneous Landscapes, Ole Wendroth, Dept of Plant and Soil Sciences, UK
• Development and Application of Numeric Interpretations of Kentucky’s Narrative Water Quality Standards for Nutrients, Lara Panayotoff, Kentucky Division of Water, Frankfort, KY
• Arsenic Removal in Reactor Systems, Aniruddha Dastidar and Y.T. Wang, Watershed Management Branch and Dept of Civil Engineering, UK
• Trends in Water Quality Issues for …

Session 1c, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• The Effects of Prescribed Fire on Amphibian and Reptile Diversity in an Oak-Grassland Restoration Area, Robert Knopp and Howard Whiteman, Dept Biological Sciences and Watershed Studies, Murray State University
• Results of a Data Evaluation to Establish Priority Remediation Areas for Dry Weather Fecal Contamination in a Karst Influenced Watershed, Steve Evans and others, Third Rock Consultants, Lexington, KY
• Development of In-House Methods for High-Throughput DNA Extraction, Kimberly L. Cook and LorraBelle Hill, USDA-ARS, Bowling Green, KY
• Validation of the Sanitary Category Value Model (SCV) for the Identification of Leaking Sewer Lines: A Study of the West Hickman …

Session 1b, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• University – Habitat for Humanity Green Infrastructure Demonstration Project, Nancy Givens and Terry Wilson, WKU Center for Environmental Education and Sustainability, Bowling Green, KY
• Effectiveness of Pollutant Removal in the McConnell Springs Stormwater Quality Wetland Pond and the Gainesway Pond Retrofit Project, Year Two, David J. Price and Susan L. Plueger, Lexington-Fayette Urban County Government
• Coca-Cola Stormwater Replenish Project, Eric Dawalt and Russ Turpin, Ridegewater, LLC and EcoGro, Lexington, KY
• ITEST and LFUCG Stormwater Professional Development, Brian Radcliffe and Carol D. Hanley, Tracy Farmer Institute for Sustainability and the Environment, UK

Session 1a, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• A Regionally-Calibrated Critical Flow for Stream Channel Protection, Bob Hawley and others, Sustainable Streams LLC, Louisville, KY
• Monitoring Wetland Restoration Success at North Fork of Irish Creek, Brian C. Reeder, Center for Environmental Education and Institute for Regional Analysis and Public Policy, Morehead State University
• NC2D Open Channel Flow Model: Development and Applications for Stream Restoration Design in Kentucky, Brian J. Belcher, Beaver Creek Hydrology LLC, Lexington, KY
• Using Remote Sensing Tools to Target Stream Protection and Wastewater Treatment BMPs in Rural Kentucky, Catherine Carter and others, Tetra Tech, Research Triangle Park, NC
• Improving Water Quality …

Plenary Session: Water Research Needs In Kentucky, Alan E. Fryar, Peter T. Goodmann, Michael S. Griffin, James A. Kipp

Kentucky Water Resources Annual Symposium

Four panelists were invited to present their visions/predictions of current and future water research needs in Kentucky in an opening plenary session at the 2012 Kentucky Water Resources Annual Symposium. The requested overall general focus was ground water research needs.

Proceedings Of 2012 Kentucky Water Resources Annual Symposium, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

This symposium was planned and conducted as a part of the state water resources research institute annual program that is supported by Grant/Cooperative Agreement Number G11AP20081 from the United States Geological Survey. The contents of this proceedings document and the views and conclusions presented at the symposium are solely the responsibility of the individual authors and presenters and do not necessarily represent the official views of the USGS or of the symposium organizers and sponsors. This publication is produced with the understanding that the United States Government is authorized to reproduce and distribute reprints for government purposes.

Development Of An Integrated Process Model For Algae Growth In A Photobioreactor, Mehregan Jalalizadeh

USF Tampa Graduate Theses and Dissertations

While understanding the kinetics of algae growth plays an important role in improving algae cultivation technology, none of the existing kinetic models are able to describe algae growth when more than three growth limiting factors are involved. A model was developed in this study to describe algae growth in a photobioreactor. Two expressions were proposed based on the Monod model to relate the specific growth rate of algae to the concentration of nitrogen, phosphorus, inorganic carbon and light intensity in the culture media. Algal biomass concentration as a function of time was calculated by solving mass and energy balances around …

Prediction Of Respiratory Motion, Suk Jin Lee

Theses and Dissertations

Radiation therapy is a cancer treatment method that employs high-energy radiation beams to destroy cancer cells by damaging the ability of these cells to reproduce. Thoracic and abdominal tumors may change their positions during respiration by as much as three centimeters during radiation treatment. The prediction of respiratory motion has become an important research area because respiratory motion severely affects precise radiation dose delivery. This study describes recent radiotherapy technologies including tools for measuring target position during radiotherapy and tracking-based delivery systems. In the first part of our study we review three prediction approaches of respiratory motion, i.e., model-based methods, …

Chemical Modification Of Polysaccharides Using Reactive Extrusion, Pratik Bhandari

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

The objective of this dissertation was to study the use of reactive extrusion for the chemical modifications of starch and cellulose. A carboxymethyl derivative of starch and carboxymethyl and acetate derivatives of cellulose were prepared using reactive extrusion.

Carboxymethyl starch with rapid swelling properties in water was prepared using reactive extrusion. This was achieved by controlling the gelatinization and through the use of NaOH by controlling the water/ethanol ratio. The effects of NaOH, H₂O, temperature, ethanol, sodium mono chloro acetate, sodium tripolyphosphate, citric acid, epichlorohydrin and extruder screw configuration on the degree of substitution of carboxymethyl starch were …