Digital Commons Network^™

Image Skeletal Muscle Progenitors In Situ To Investigate How The Ecm Composition Regulates Musculoskeletal Assembly, Andrew L. Schilb, Sarah Calve

The Summer Undergraduate Research Fellowship (SURF) Symposium

Regenerative medicine has difficulty with the human body’s inability to functionally repair tissues lost as a result of disease or serious accident. Through tissue engineering, there has been development of various scaffolding with the purpose of enhancing skeletal muscle regrowth and functionality. The scaffolds are typically constructed from artificial polymers or decellularized extracellular matrix (ECM) that mimics adult tissue. These standardized scaffolds are hindered though by the host since tissue engineers have not taken into account of how the composition musculoskeletal ECM during tissue repair is dramatically different than that of a homeostatic adult. Now green fluorescent protein positive (GFP+) …

Multi-Factorial Stability Study Of Metabolites, Ruijun Zheng, John A. Morgan

The Summer Undergraduate Research Fellowship (SURF) Symposium

Previous research done on metabolites has found that high energy compounds like adenosine triphosphate(ATP), nicotinamide adenine dinucleotide phosphate reduced (NADPH) or nicotinamide adenine dinucleotide reduced (NADH) are unstable in cell extracts at relatively high temperature and acidic condition. The multifactorial stability study of metabolites enables us to verify the best condition of storage for these energy compounds and sugar phosphates, as well as to strengthen the understanding of metabolism in biological study. As the most solvents for high performance liquid chromatography (HPLC) are acidic and unfavorable for these energy compounds, it is necessary to perform a detailed study about …

The Effects Of Exogenous Extracellular Matrix And Substrate Stiffness On Mouse Tendon Cells In Vitro, Caleb J. Mcdaniel, Sarah Calve

The Summer Undergraduate Research Fellowship (SURF) Symposium

To improve the treatment of musculoskeletal injuries, a better understanding of the transitional environment in which progenitor cells form mature musculoskeletal constructs is necessary. This need arises because injury repair requires restructuring of tissue, similar to the initial tissue construction that occurs during embryonic development by progenitor cells. Differences in both the biochemical and mechanical environments between a transitional and a differentiated state are known to take place, but how these differences affect cell behavior had not yet been characterized in mammalian tendon cells. In order to investigate this, we have determined the effects of exogenous extracellular matrix and the …

Inkjet Printing Of Polarized Yeast Cells, Xiuyuan Yang, Kari Clase

The Summer Undergraduate Research Fellowship (SURF) Symposium

The motivation is to applying engineering knowledge to develop 3D bio-printing in inkjet printer (first stage--monolayer). To achieve the goal, there are three problems to solve. First, we have to figure out regulation of growth of target cells; inability to regulate the location and pattern of growing cells make us even unable to build 3D printer in the direct way. Second problem is how to protect of yeast cells from high temperature and viscous force when printing. The third issue is how to modify the inkjet printer especially the feeding system in order to implement printing on other materials rather …

Adhesive Elastomeric Proteins, Haefa Mansour, Julie Liu

The Summer Undergraduate Research Fellowship (SURF) Symposium

Sutures and staples commonly used to close surgical wounds tend to be much stiffer than the surrounding tissue, often resulting in external tissue damage. Surgical adhesives provide a promising alternative to these sutures and staples. Ideal surgical adhesives are biocompatible, able to set well and remain sticky in moist conditions, possess strong adhesive and cohesive properties, and exhibit mechanical properties that mimic those of the surrounding tissue. Unfortunately, the adhesives available today are unable to satisfactorily meet all of these criteria. We are utilizing protein engineering techniques to design, create, and test a new surgical adhesive that combines the adhesive …

Insights Into The Effect Of Geometrical Parameters In The Mechanical Properties Of The Radular Teeth Of The Cryptochiton Stelleri – A 3d Print Approach, Chan Jeong, Enrique Escobar, Pablo Zavattieri Dr.

The Summer Undergraduate Research Fellowship (SURF) Symposium

The Cryptochiton Stelleri is known to have ultra-hard radular teeth that have one of the largest hardness (9-12GPa) and stiffness (90-125GPa) among other biological materials such as Enamel and Abalone shell. The ultrastructure of the teeth is formed by a bundle of highly mineralized rods composed of iron oxides and organic material. The main method to measure the material properties has been through nanoindentation. However there are limitations to nanoindentation of the Chiton’s teeth such as limited equipment, costly and time consuming preparation of the samples, and observation of nanoscale features being difficult. In this work, the rod-like microstructure of …

Solvent Selection For Liquid-Liquid Extraction Of Acetic Acid From Biomass Hydrolysate, Emma A. Barber, Mahdieh Aghazadeh, Abigail Engelberth

The Summer Undergraduate Research Fellowship (SURF) Symposium

Biofuels are one of the most hopeful alternative energy sources to fossil fuels. However, the processing and production of biofuels needs improvement to be economically competitive in the current market. One drawback is the presence of naturally occurring compounds that decrease the bioethanol production rate and yield; these are called inhibitors. A resolution to this problem is to remove the inhibitors from biomass fermentation broth prior to fermentation. This project examined liquid-liquid extraction (LLE) for removal of acetic acid, a major inhibitor. Initially, a stock solution of glucose, xylose, acetic acid, and water was combined with an additional organic solvent …

Direct Quantitative Analysis Of Biomarkers Using Mass Spectrometry, Morgan N. Mcluckey, Zheng Ouyang

The Summer Undergraduate Research Fellowship (SURF) Symposium

Point-of-care (POC) diagnostics describes a step in the medical treatment process where drugs can be monitored in a patient’s body on-site and in a timely fashion. Mass spectrometry (MS) can provide a quick, efficient, and highly accurate method of analysis of patient biofluids and tissues. Developing methods to bring this diagnostic mechanism to hospitals and clinics has the potential to improve patient care through, for example, personalized medicine. Our goal was to develop a way to effectively introduce internal standard (IS), a necessary chemical for the analytical process, to low-volume biofluid samples. Additionally, the effective direct quantitation of biomarkers with …

Iron-Magnesium Alloy Bioabsorbable Blood Stent, Kaitlyn Jarry, L Stanciu

The Summer Undergraduate Research Fellowship (SURF) Symposium

Bioabsorbable materials are fairly new and proper alloys for implantation in the body have not yet been established. There are a few polymers that have showed promise, but they do not provide the proper mechanical support that metal does. These materials would be used to create devices such as blood stents and orthopedic screws. Investigation into the properties of different alloys can help to establish a material that can be used for implanted devices that are only needed for a limited amount of time. In order to investigate these alloys many different experiments will to be run to test the …

Estimation Of Two-Stage Ditch Excavation Volume Using Lidar Data Full Paper, Kirsten E. Paff, Jane Frankenberger, Naime Celik

The Summer Undergraduate Research Fellowship (SURF) Symposium

Drainage ditches are a major pathway for sediment, nutrients, and pesticides to enter stream systems, which threaten environmental and human health. Unlike trapezoidal ditches, two-stage ditches have a vegetated bench that acts as a floodplain, which helps to prevent erosion and to increase the processing of nutrients to improve water quality. Converting a trapezoidal ditch to a two-stage ditch is expensive, due to the large volumes of soil that need to be excavated. Since ditch geometries vary significantly and surveying each potential site by hand would be time consuming and expensive, a tool based upon online Light Detection and Ranging …

Polymers Functioning As Artificial Muscles, Nicholas Stanonis, William Pitt

Journal of Undergraduate Research

Current research in the field of polymers has led to the development of synthetic muscles that function similar to biological muscles. Scientists have engineered polymers to contract up to one thousand times their original volume when exposed to changes in light, temperature, voltage, or pH. The ability to contract and relax makes these polymers ideal artificial muscles. Currently, artificial muscles are being applied in the field of robotics. NASA is in the process of developing a dust wiper for their planetary rovers that operates with an artificial muscle. A common goal that many scientists are working towards is the implementation …

Electromagnetic Properties Of Water In The Presence Of A Protein, Kelly Jeppesen, Travis Oliphant

Journal of Undergraduate Research

Light scattering is a means of detecting certain chemical properties of a sample of material. As a photon (light packet) encounters any material, there is some probability that the photon will be absorbed. The energy from an absorbed photon will either work to heat the sample or be reemitted. When re-emitted, a photon will not necessarily travel in the same direction or with the same phase in which it encountered the material. Also, the amount of energy re-emitted via scattering is dependent on the incident light wavelength and properties of the material, which, for example, is why the sky looks …

High Field Breakdown Characteristics Of Carbon Nanotube Thin Film Transistors, Man Prakash Gupta, Ashkan Behnam, Feifei Lian, David Estrada, Eric Pop, Satish Kumar

Materials Science and Engineering Faculty Publications and Presentations

The high field properties of carbon nanotube (CNT) network thin film transistors (CN-TFTs) are important for their practical operation, and for understanding their reliability. Using a combination of experimental and computational techniques we show how the channel geometry (length L_C and width W_C) and network morphology (average CNT length L_t and alignment angle distribution θ) affect heat dissipation and high field breakdown in such devices. The results suggest that when W_C ≥ L_t, the breakdown voltage remains independent of W_C but varies linearly with L_C. The breakdown power varies …

Analyzing Hexavalent Chromium (Cr Vi)-Free Paint Systems For Sls, Maria Emma Torres

Von Braun Symposium Student Posters

No abstract provided.

Is Dna A Good Model Polymer?, Douglas R. Tree, Abhiram Muralidhar, Patrick S. Doyle, Kevin D. Dorfman

Faculty Publications

The details surrounding the crossover from wormlike-specific to universal polymeric behavior has been the subject of debate and confusion even for the simple case of a dilute, unconfined wormlike chain. We have directly computed the polymer size, form factor, free energy, and Kirkwood diffusivity for unconfined wormlike chains as a function of molecular weight, focusing on persistence lengths and effective widths that represent single-stranded and double-stranded DNA in a high ionic strength buffer. To do so, we use a chain-growth Monte Carlo algorithm, the pruned-enriched Rosenbluth method (PERM), which allows us to estimate equilibrium and near-equilibrium dynamic properties of wormlike …

Zno Nanoneedle/H2o Solid-Liquid Heterojunction-Based Self-Powered Ultraviolet Detector, Qinghao Li, Lin Wei, Yanru Xie, Kai Zhang, Lei Liu, Dapeng Zhu, Jun Jiao, Yanxue Chen, Shishen Yan, Guolei Liu, Liangmo Mei

Physics Faculty Publications and Presentations

ZnO nanoneedle arrays were grown vertically on a fluorine-doped tin oxide-coated glass by hydrothermal method at a relatively low temperature. A self-powered photoelectrochemical cell-type UV detector was fabricated using the ZnO nanoneedles as the active photoanode and H2O as the electrolyte. This solid-liquid heterojunction offers an enlarged ZnO/water contact area and a direct pathway for electron transport simultaneously. By connecting this UV photodetector to an ammeter, the intensity of UV light can be quantified using the output short-circuit photocurrent without a power source. High photosensitivity, excellent spectral selectivity, and fast photoresponse at zero bias are observed in this UV detector. …

Bacteriorhodopsin-Based Sensors, Craig Friedrich, Donald Lueking, Mark Griep

Michigan Tech Patents

A sensor comprising a membrane containing bacteriorhodopsin. In one embodiment, the sensor comprises a layer of purple membrane between a first and a second electrode, wherein the electrodes are connected to a circuit such that a signal is produced when a charge is transferred across the membrane. In another embodiment, the sensor comprises a field effect transistor with a layer of purple membrane deposited on the gate. The layer of purple membrane may be further functionalized by adding fluorophores to the layer of purple membrane. The fluorophores may be deposited adjacent to the layer of purple membrane, or the fluorophores …

Analysis Of Electrical Current As An Agent For Bacterial Killing, Taylor Turner, Dr. William Pitt

Journal of Undergraduate Research

Previously it has been shown that antibiotic killing of bacteria, especially biofilms, can be enhanced by various non-invasive treatments. Low-level electric current has been shown to increase killing of Streptococcus gordonii biofilms when applied during treatment with gentamicin.1 Others have partially tested the feasibility of electrically killing bacteria on prosthetic joints.2 Ultrasonic exposure has also been shown to increase killing of bacterial biofilms.3 Our group previously observed that ultrasound increased the transport of gentamicin through biofilms.4 Electrical treatment of S. gordonii in the absence of gentamicin also generates a 1.9 log reduction in biofilm cell counts.1 Our previous findings showed …

Advances In The Redcat Software Package, Chris Schmidt, Stephanie J. Irausquin, Homayoun Valafar

Faculty Publications

Background

Residual Dipolar Couplings (RDCs) have emerged in the past two decades as an informative source of experimental restraints for the study of structure and dynamics of biological macromolecules and complexes. The REDCAT software package was previously introduced for the analysis of molecular structures using RDC data. Here we report additional features that have been included in this software package in order to expand the scope of its analyses. We first discuss the features that enhance REDCATs user-friendly nature, such as the integration of a number of analyses into one single operation and enabling convenient examination of a structural ensemble …

Cell-Free Unnatural Amino Acid Incorporation With Alternative Energy Systems And Linear Expression Templates, Prashanta Shrestha, Mark Thomas Smith, Bradley Charles Bundy

Faculty Publications

Site-specific incorporation of unnatural amino acids (uAAs) during protein synthesis expands the proteomic code through the addition of unique residue chemistry. This field provides a unique tool to improve pharmacokinetics, cancer treatments, vaccine development, proteomics and protein engineering. The limited ability to predict the characteristics of proteins with uAA-incorporation creates a need for a low-cost system with the potential for rapid screening. Escherichia coli-based cell-free protein synthesis is a compelling platform for uAA incorporation due to the open and accessible nature of the reaction environment. However, typical cell-free systems can be expensive due to the high cost of energizing …

Data Workflow In Large Scale Simulations Of Blood Flow In Aneurysms, Paolo Di Achille, Jay D. Humphrey

Yale Day of Data

Aneurysms are responsibile for significant morbidity and mortality, and there is a need for an increased understanding of all the aspects of the natural history of these lesions. We are currently working to extend our analyses with the goal of creating models of aneurysmal progression that are able to predict rupture risk through the description of the evolving geometry, structure, properties, and loads.

Realization of patient specific models of the blood circulation necessitates a complex computationally and data intensive procedure that starts from the collection of medical images in a clinical setting and encompasses several stages of data processing on …

Improving The Sweeping Efficiency Of Permanganate Into Low Permeable Zones To Treat Tce: Experimental Results And Model Development, Chanat Chokejaroenrat, Negin Kananizadeh, Chainarong Sakulthaew, Steve D. Comfort, Yusong Li

Nebraska Water Center: Faculty Publications

The residual buildup and treatment of dissolved contaminants in low permeable zones (LPZs) is a particularly challenging issue for injection-based remedial treatments. Our objective was to improve the sweeping efficiency of permanganate into LPZs to treat dissolved-phase TCE. This was accomplished by conducting transport experiments that quantified the ability of xanthan-MnO₄⁻ solutions to penetrate and cover (i.e., sweep) an LPZ that was surrounded by transmissive sands. By incorporating the non-Newtonian fluid xanthan with MnO₄⁻, penetration of MnO₄⁻ into the LPZ improved dramatically and sweeping efficiency reached 100% in fewer pore volumes. To quantify …

Performance Guarantees For C-Wmd Robot Missions, Shu Jiang, Ronald C. Arkin, Damian M. Lyons, Tsung-Ming Liu, Dagon Harrington

Faculty Publications

Robotics has been considered as one of the five key technology areas for defense against attacks with weapons of mass destruction (WMD). However, due to the mass impact nature of WMD, failures of counter-WMD (C-WMD) missions can have catastrophic consequences.To ensure robot's success in carrying out C-WMD missions, we have developed a novel verification framework in providing performance guarantees for behavior-based and probabilistic robot algorithms in complex real-world environments. This paper describes the system architecture and discusses how the verification framework can be used to provide pre-mission performance guarantees for robots in executing C-WMD missions.

Cross-Linked Alginate Film Pore Size Determination Using Atomic Force Microscopy And Validation Using Diffusivity Determinations, Cheryl Simpliciano, Larissa Clark, Behrokh Asi, Nathan Chu, Maria Mercado, Steven Diaz, Michel Goedert, Maryam Mobed-Miremadi

Bioengineering

The deficit of organ donors has fueled the need for advances in tissue engineering and regenerative medicine. Microencapsulation in alginate immuno-isolation membranes has been used to treat many disabling metabolic disorders, namely, phenylketonuria, kidney failure and diabetes mellitus. Systematic nutrient flux determinations are hindered by the lack of experimental data on alginate-based membrane topography and the pore size thus preventing the full therapeutic potential of the bio-membranes to be reached. In this study, samples of cross-linked alginate membranes were subjected to the following analytical characterization: 1) pore size characterization using atomic force microscopy operated in contact mode to detect and …

Department Of Biological Systems Engineering Newsletter, October 2013

BSE Department Magazine

No abstract provided.

A Linked-Data-Driven And Semantically-Enabled Journal Portal For Scientometrics, Yingjie Hu, Krzysztof Janowicz, Grant Mckenzie, Kunal Sengupta

Computer Science and Engineering Faculty Publications

The Semantic Web journal by IOS Press follows a unique open and transparent process during which each submitted manuscript is available online together with the full history of its successive decision statuses, assigned editors, solicited and voluntary reviewers, their full text reviews, and in many cases also the authors’ response letters. Combined with a highly-customized, Drupal-based journal management system, this provides the journal with semantically rich manuscript time lines and networked data about authors, reviewers, and editors. These data are now exposed using a SPARQL endpoint, an extended Bibo ontology, and a modular Linked Data portal that provides interactive scientometrics …

String Similarity Metrics For Ontology Alignment, Michelle Cheatham, Pascal Hitzler

Computer Science and Engineering Faculty Publications

Ontology alignment is an important part of enabling the semantic web to reach its full potential. The vast majority of ontology alignment systems use one or more string similarity metrics, but often the choice of which metrics to use is not given much attention. In this work we evaluate a wide range of such metrics, along with string pre-processing strategies such as removing stop words and considering synonyms, on different types of ontologies. We also present a set of guidelines on when to use which metric. We furthermore show that if optimal string similarity metrics are chosen, those alone can …

Free Your Mind-Unlock Your Inner Creativity, Alyssa Black, William Dow, Stephanie Harrison, Adam Kerbs, Katheleen Mcguire, Phillip Stroch, Jessica Urbano, Bradley Chase, Frank G. Jacobitz, Thomas Schubert

School of Engineering: Faculty Scholarship

Creativity is a major factor in many careers, subjects, and disciplines. Although many people first assume engineering to be a field of study that does not require any creativity, it is actually an essential tool for successful engineers. The mark of a truly accomplished engineer is the ability to problem-solve effectively; in other words, to generate creative solutions. Although the goal as engineers is to become more creative throughout one’s career, is it even possible to gain creativity? Is creativity an innate quality, or a learned one? Since the engineering process demands creativity, we looked into how creativity can be …

An Integrated Plasma Spectroscopic And Capacitive Sensing Platform For Water Quality Diagnostics, John William Sweeney

Doctoral Dissertations

Even in modern times, the consumption of polluted water continues to inflict tremendous suffering on millions of people worldwide that is largely preventable with adequate sanitation practices, routine water quality diagnostics, and treatment. However, conventional water quality monitoring practices remain a time consuming endeavor, where water samples collected on-site are transported to off-site laboratories for evaluation with laboratory-scale chemical analysis devices. While considerable efforts have been made to miniaturize these devices for in-field use, many of the devices reported in the literature provide an incomplete assessment of a water contaminant's environmental impact by focusing on identifying its chemical composition and …

Halloysite Nanotube Composites For Sustained Release Of Antimocrobial Agents (Antiseptics And Antibiotics), Wenbo Wei

Doctoral Dissertations

Encapsulation of antimicrobial agents (simple antiseptics and more specific antibiotics) within micro-scale and nano-scale containers may provide prolonged and more evenly distributed drug release. One of such containers proposed at Louisiana Tech is natural halloysite clay nanotubes. Halloysite is an aluminosilicate tube with a length of approximately 1 µm, outer diameter of approximately 50 nm, and internal lumen of 15 nm. The chemical composition of halloysite is similar to more common clay–kaolinite, and it can be described as rolled sheets of kaolinite. Halloysite, loaded with drugs inside its lumen, has shown aqueous release of the loaded chemicals over 10-20 hours …