Digital Commons Network^™

Efficient Time Of Arrival Calculation For Acoustic Source Localization Using Wireless Sensor Networks, Prashanth G. Reddy

ETD Archive

Acoustic source localization is a very useful tool in surveillance and tracking applications. Potential exists for ubiquitous presence of acoustic source localization systems. However, due to several significant challenges they are currently limited in their applications. Wireless Sensor Networks (WSN) offer a feasible solution that can allow for large, ever present acoustic localization systems. Some fundamental challenges remain. This thesis presents some ideas for helping solve the challenging problems faced by networked acoustic localization systems. We make use of a low-power WSN designed specifically for distributed acoustic source localization. Our ideas are based on three important observations. First, sounds emanating …

Measuring The Environmental Impact Of Embedded/Bankfull Culverts, Joseph A. Pavlick

ETD Archive

Streams are dynamic systems constantly changing over time. The health of a stream system is tied to the amount of sedimentation occurring in a stream. The addition of roadway culverts into a stream has been shown to cause erosion and sedimentation problems if the culvert does not meet stream characteristics of slope, bankfull/width, and channel orientation. This has led to the design of embedded/bankfull culverts. In the State of Ohio, the Ohio Environmental Protection Agency and the United States Army Corps of Engineers now require the Ohio Transportation to install embedded/bankfull culverts at all stream locations during new roadway construction. …

Measurement Of White Matter Structure Changes In Amyotrophic Lateral Sclerosis Using Fractal Analysis, Zao Liu

ETD Archive

Amyotrophic lateral sclerosis (ALS) is recognized as a motor neuron disorder affecting the structure and function of the brain and neuromuscular system. Very little is known, however, that the nervous system degeneration is dependent on disease phenotypes of ALS. The purpose of this study was to determine the degree of brain white matter (WM) structure degeneration in four ALS patient groups characterized by their clinical signs and neuroimaging measurements. Fractal dimension (FD) of three-dimensional (3D) brain WM images was quantitatively analyzed to evaluate the WM structural complexity, including complexity levels of the WM skeleton, surface and general structures in ALS …

An Assessment Of The Accuracy Of Magnetic Resonance Phase Velocity Mapping In Turbulent Flow Through Orifices, Sahitya Pidaparthi

ETD Archive

Magnetic resonance phase velocity mapping (MRPVM) is an established clinical technique to measure blood flow. The acquired information can be used to diagnose a variety of cardiovascular disease. One of the main limitations of MRPVM is that it cannot quantify the flow under turbulent flow conditions. Such conditions develop in certain cases such as in heart valve stenosis and arterial stenosis. Specifically, heart valve stenosis is a serious disease in which the valve does not open as much as necessary for blood to pass through. As a result, the heart has to overwork to overcome the increased resistance. If untreated, …

Restoration Of Emergent Sandbar Habitat Complexes In The Missouri River, North Dakota

United States Army Corps of Engineers, Omaha District

In 2003, the United States Fish and Wildlife Service (USFWS) issued an Amendment to the 2000 Biological Opinion (BiOp) with recommendations for the US Army Corps of Engineers’ (Corps) operations on the Missouri River Mainstem System (MRMS). The BiOp Amendment was the result of continuing consultation between the Corps and the USFWS under the Endangered Species Act (ESA) and supplemented the recommendations given in the previous BiOp (USFWS, 2000). The 2000 BiOp and amendments made in 2003 will be collectively referred to as “BiOp” hereafter. The document found that Corps operations on the Missouri River were not likely to jeopardize …

Protective Immunity To Pre-Erythrocytic Stage Malaria, Robert J. Schwenk, Thomas L. Richie

United States Army: Publications

The development of a vaccine against malaria is a major research priority given the burden of disease, death and economic loss inflicted upon the tropical world by this parasite. Despite decades of effort, however, a vaccine remains elusive. The best candidate is a subunit vaccine termed RTS,S but this provides only partial protection against clinical disease. This review examines what is known about protective immunity against pre-erythrocytic stage malaria by considering the humoral and T cell-mediated immune responses that are induced by attenuated sporozoites and by the RTS,S vaccine. On the basis of these observations a set of research priorities …

Clostridium Difficile Infections In Patients With Severe Burns, Scott J. Crabtree, Janelle L. Robertson, Kevin K. Chung, Evan M. Renz, Steven E. Wolf, Duane R. Hospenthal, Clinton K. Murray

United States Army: Publications

With improved survival in burn patients, Clostridium difficile infection (CDI) remains a significant potential complication. The incidence of, risk factors for, and outcomes of CDI in severely burned patients are poorly studied and remain unclear. This study involves retrospective case control and cohort studies using electronic medical records from February 1, 2002 to January 31, 2009 at the US Department of Defense’s only burn unit. Demographic, risk factor, and outcome data were collected for all C. difficile toxin positive patients in the burn, medical, and surgical intensive care units and the hospital’s step down unit along with an additional analysis …

Determination Of Threshold Adverse Effect Doses Of Percutaneous Vx Exposure In African Green Monkeys, Raymond F. Genovese, Bernard J. Benton, John L. Oubre, Christopher E. Byers, E. Michael Jakubowski, Robert J. Mioduszewski, Timothy J. Settle, Thomas J. Steinbach

United States Army: Publications

Percutaneous exposure to the chemical warfare nerve agent VX was evaluated in African green monkeys (n = 9). Doses of VX (7.5–100 μg/kg) were applied to the skin for 60 min and residual agent was quantified (before decontamination) to estimate the absorbed dose. Monkeys were evaluated for the presence or absence of clinical signs of toxicity and blood was sampled periodically (30 min–12 weeks) following exposure to measure the degree of circulating acetylcholinesterase (AChE) inhibition. Monkeys were also evaluated for behavioral changes fromVXexposure using a serial probe recognition (SPR) task. The lowest observable adverse effect level (LOAEL) for the production …

Detection Of Six Serotypes Of Botulinum Neurotoxin Using Fluorogenic Reporters, Daniel R. Ruge, F. Mark Dunning, Timothy M. Piazza, Brian E. Molles, Michael Adler, Füsûn N. Zeytin, Ward C. Tucker

United States Army: Publications

Methods that do not require animal sacrifice to detect botulinum neurotoxins (BoNTs) are critical for BoNT antagonist discovery and the advancement of quantitative assays for biodefense and pharmaceutical applications. Here we describe the development and optimization of fluorogenic reporters that detect the proteolytic activity of BoNT/A, B, D, E, F, and G serotypes in real time with femtomolar to picomolar sensitivity. Notably, the reporters can detect femtomolar concentrations of BoNT/A in 4 h and BoNT/E in 20 h, sensitivity that equals that of animal-based methods. The reporters can be used to determine the specific activity of BoNT preparations with intra- …

Prophylaxis With Human Serum Butyrylcholinesterase Protects Guinea Pigs Exposed To Multiple Lethal Doses Of Soman Or Vx, Ashima Saxena, Wei Sun, James M. Fedorko, Irwin Koplovitz, Bhupendra P. Doctor

United States Army: Publications

Human serum butyrylcholinesterase (Hu BChE) is currently under advanced development as a bioscavenger for the prophylaxis of organophosphorus (OP) nerve agent toxicity in humans. It is estimated that a dose of 200 mg will be required to protect a human against 2 × LD₅₀ of soman. To provide data for initiating an investigational new drug application for the use of this enzyme as a bioscavenger in humans, we purified enzyme from Cohn fraction IV-4 paste and initiated safety and efficacy evaluations in mice, guinea pigs, and non-human primates. In mice, we demonstrated that a single dose of enzyme that …

Evaluating The Use Of Steady Burn Warning Lights On Drums For Workzone Safety, Prasad Nannapaneni

Wayne State University Dissertations

Abstract

EVALUATING THE USE OF

STEADY BURN WARNING LIGHTS ON DRUMS

FOR WORK ZONE SAFETY

by

PRASAD LAKSHMI VARA NANNAPANENI

May 2011

Advisor: Dr. Timothy Gates

Major: Civil Engineering

Degree: Doctor of Philosophy

Roadway maintenance and repair has become increasingly commonplace in the United States over the past several decades as our roadway infrastructure has continued to age and deteriorate. Maintenance and repair work on an existing roadway often presents the challenge of maintaining traffic on the existing roadway while work is being performed, thereby necessitating the use of what is commonly referred to as a roadway "work zone". One …

Novel Models And Algorithms For Systems Reliability Modeling And Optimization, Dingzhou Cao

Wayne State University Dissertations

Recent growth in the scale and complexity of products and technologies in the defense and other industries is challenging product development, realization, and sustainment costs. Uncontrolled costs and routine budget overruns are causing all parties involved to seek lean product development processes and treatment of reliability, availability, and maintainability of the system as a true "design parameter". To this effect, accurate estimation and management of the system reliability of a design during the "earliest stages" of new product development is not only critical for managing product development and manufacturing costs but also to control life cycle costs (LCC). In this …

Methodological Study On Technology Integration For Sustainable Manufacturing In The Surface Finishing Industry, Tamer Girgis

Wayne State University Dissertations

Today, industries explore advanced techniques to enhance their development efforts to meet the goals of sustainability due to various challenges which is caused by industrial globalization, high energy and raw material costs, increased environmental regulations and social pressures, and new technological innovations. In order for an industrial process to become sustainable, it is essential to improve the process inputs efficiency from raw materials and energy while maintaining highest productivity and quality; in addition to, minimizing waste generation and the impact on the environment. Engaging in industrial sustainability requires major efforts from decision makers to implement advanced technologies to satisfy each …

An Investigation Of The Biomechanical Response From Shock Wave Loading To The Head, Alessandra Dal Cengio Leonardi

Wayne State University Dissertations

There is a pressing need for a comprehensive explanation of the mechanism of brain injury after exposure to blast and several hypotheses have been suggested. The focus of this research was to investigate one of the hypotheses for primary brain injury due to blast: multimodal skull flexure. The significance of this research is twofold. First, resolution of the mode of energy transfer and of the induced stresses within the skull-brain system will allow for creations of mitigation/protective techniques/equipment, as well as design of experiments investigating live-cell response using more reliable physical models. Second, the data obtained experimentally will be available …

Finite Element Reconstruction Of Real World Aortic Injury In Near-Side Lateral Automotive Crashes With Conceptual Countermeasures, Aditya Neelakanta Belwadi

Wayne State University Dissertations

Traumatic rupture of the aorta (TRA) remains the second most common cause of death associated with motor vehicle crashes after brain injury. On an average, nearly 8,000 people die annually in the United States due to blunt injury to the aorta. It is observed that more than 80% of occupants who suffer an aortic injury die at the scene due to exsanguination into the chest. With the advent of more accurate and established human body finite element (FE) models, FE crash reconstruction methods may become a valuable tool when assessing crash scenarios and occupant injury mechanisms.

The current study is …

Pamam Dendrimer-Based Therapeutic And Diagnostic Nanodevices, Admira Bosnjakovic

Wayne State University Dissertations

Dendrimers are ideal materials to be used in the emerging field of nanomedicine. Their nanoscale size and high density of functional groups on their peripheries allow them to be used for various biomedical applications. This work exploits dendrimers as drug delivery vehicles and a versatile platform for capturing biomarkers with improved sensitivity and specificity. Hydroxyl terminated poly(amidoamine) dendrimer (PAMAM-OH) was modified with a linker having amine group at the end and conjugated to two drugs, erythromycin (EM) and allopregnanonolne, respectively and evaluated in vitro. Both drugs were provided with a linker having carboxylic group required for conjugation reaction with dendrimer. …

The Rock 2011, School Of Engineering And Computer Science

The Rock

No abstract provided.

Img/M: The Integrated Metagenome Data Management And Comparative Analysis System, Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavromatis, Natalia N. Ivanova, Nikos C. Kyrpides

United States Department of Energy: Publications

The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M’s data content and analytical capabilities have been extended through regular updates since its first release in 2007. IMG/M is available at http://img.jgi.doe.gov/m. A companion IMG/M systems provide support for annotation and expert review of unpublished metagenomic data sets (IMG/M ER: http://img.jgi.doe.gov/mer).

Vista Region Viewer (Rviewer)—A Computational System For Prioritizing Genomic Intervals For Biomedical Studies, Igor Lukashin, Pavel Novichkov, Dario Boffelli, Alex R. Paciorkowski, Simon Minovitsky, Song Yang, Inna Dubchak

United States Department of Energy: Publications

Summary:
Current genome browsers are designed for linear browsing of individual genomic regions, but the high-throughput nature of experiments aiming to elucidate the genetic component of human disease makes it very important to develop user-friendly tools for comparing several genomic regions in parallel and prioritizing them based on their functional content. We introduce VISTA Region Viewer (RViewer), an interactive online tool that allows for efficient screening and prioritization of regions of the human genome for follow-up studies. The tool takes as input genetic variation data from different biomedical studies, determines a number of various functional parameters for both coding …

Complete Genome Sequence Of The Plant Growth-Promoting Endophyte Burkholderia Phytofirmans Strain Psjn, Alexandra Weilharter, Birgit Mitter, Maria V. Shin, Patrick S. G. Chain, Jerzy Nowak, Angela Sessitsch

United States Department of Energy: Publications

Burkholderia phytofirmans PsJN^T is able to efficiently colonize the rhizosphere, root, and above-ground plant tissues of a wide variety of genetically unrelated plants, such as potatoes, canola, maize, and grapevines. Strain PsJN shows strong plant growth-promoting effects and was reported to enhance plant vigor and resistance to biotic and abiotic stresses. Here, we report the genome sequence of this strain, which indicates the presence of multiple traits relevant for endophytic colonization and plant growth promotion.

An Approach To Crystallizing Proteins By Metal-Mediated Synthetic Symmetrization, Arthur Laganowsky, Minglei Zhao, Angela B. Soriaga, Michael R. Sawaya, Duilio Cascio, Todd O. Yeates

United States Department of Energy: Publications

Combining the concepts of synthetic symmetrization with the approach of engineering metal-binding sites, we have developed a new crystallization methodology termed metal-mediated synthetic symmetrization. In this method, pairs of histidine or cysteine mutations are introduced on the surface of target proteins, generating crystal lattice contacts or oligomeric assemblies upon coordination with metal. Metal-mediated synthetic symmetrization greatly expands the packing and oligomeric assembly possibilities of target proteins, thereby increasing the chances of growing diffraction-quality crystals. To demonstrate this method, we designed various T4 lysozyme (T4L) and maltose-binding protein (MBP) mutants and cocrystallized them with one of three metal ions: copper (Cu …

Ecosystem Services Altered By Human Changes In The Nitrogen Cycle: A New Perspective For Us Decision Making, Jana E. Compton, John A. Harrison, Robin L. Dennis, Tara L. Greaver, Brian H. Hill, Stephen J. Jordan, Henry Walker, Holly V. Campbell

United States Environmental Protection Agency: Publications

Human alteration of the nitrogen (N) cycle has produced benefits for health and well-being, but excess N has altered many ecosystems and degraded air and water quality. US regulations mandate protection of the environment in terms that directly connect to ecosystem services. Here, we review the science quantifying effects of N on key ecosystem services, and compare the costs of N-related impacts or mitigation using the metric of cost per unit of N. Damage costs to the provision of clean air, reflected by impaired human respiratory health, are well characterized and fairly high (e.g. costs of ozone and particulate damages …

Toxicity And Recovery In The Pregnant Mouse After Gestational Exposure To The Cyanobacterial Toxin, Cylindrospermopsin, N. Chernoff, E. H. Rogers, R. D. Zehr, M. I. Gage, D. E. Malarkey, C. A. Bradfield, Y. Liu, J. E. Schmid, R. H. Jaskot, J. H. Richards, C. R. Wood, M. B. Rosen

United States Environmental Protection Agency: Publications

Cylindrospermopsin (CYN) is a tricyclic alkaloid toxin produced by fresh water cyanobacterial species worldwide. CYN has been responsible for both livestock and human poisoning after oral exposure. This study investigated the toxicity of CYN to pregnant mice exposed during different segments of gestation. The course of recovery and individual responses to the toxin were evaluated. Adverse effects of CYN were monitored up to 7 weeks post-dosing by clinical examination, histopathology, biochemistry and gene expression. Exposure on gestational days (GD) 8–12 induced significantly more lethality than GD13–17 exposure. Periorbital, gastrointestinal and distal tail hemorrhages were seen in both groups. Serum markers …

Maternal Influences On Epigenetic Programming Of The Developing Hypothalamic-Pituitary-Adrenal Axis, Curtis E. Grace, Sung-Je Kim, John M. Rogers

United States Environmental Protection Agency: Publications

Parental and environmental factors during the prenatal and postnatal periods permanently affect the physiology and metabolism of offspring, potentially increasing disease risk later in life. Underlying mechanisms are being elucidated, and effects on a number of organs and metabolic pathways are likely involved. In this review, we consider effects on the developing hypothalamic-pituitary-adrenal (HPA) axis, which may represent a common pathway for developmental programming. The focus is on prenatal and early postnatal development, during which the HPA axis may be programmed in a manner that affects health for a lifetime. Programming of the HPA axis involves, at least in part, …

Current And Future Needs For Developmental Toxicity Testing, Susan L. Makris, James H. Kim, Amy Ellis, Willem Faber, Wafa Harrouk, Joseph M. Lewis, Merle G. Paule, Jennifer Seed, Melissa Tassinari, Rochelle Tyl

United States Environmental Protection Agency: Publications

A review is presented of the use of developmental toxicity testing in the United States and international regulatory assessment of human health risks associated with exposures to pharmaceuticals (human and veterinary), chemicals (agricultural, industrial, and environmental), food additives, cosmetics, and consumer products. Developmental toxicology data are used for prioritization and screening of pharmaceuticals and chemicals, for evaluating and labeling of pharmaceuticals, and for characterizing hazards and risk of exposures to industrial and environmental chemicals. The in vivo study designs utilized in hazard characterization and dose-response assessment for developmental outcomes have not changed substantially over the past 30 years and have …

Aryl Hydrocarbon Receptor Activation During Pregnancy, And In Adult Nulliparous Mice, Delays The Subsequent Development Of Dmba-Induced Mammary Tumors, Tao Wang, Heather M. Gavin, Volker M. Arlt, B. Paige Lawrence, Suzanne E. Fenton, Daniel Medina, Beth A. Vorderstrasse

United States Environmental Protection Agency: Publications

2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD), the prototypic ligand for the aryl hydrocarbon receptor (AhR), promotes tumor formation in some model systems. However, with regard to breast cancer, epidemiological and animal studies are inconclusive as to whether exposure increases tumor incidence or may instead be protective. We have previously reported that mice exposed to TCDD during pregnancy have impaired differentiation of mammary tissue, including decreased branching and poor development of lobuloalveolar structures. Because normal pregnancy-induced mammary differentiation may protect against subsequent neoplastic transformation, we hypothesized that TCDD-treated mice would be more susceptible to chemical carcinogenesis after parturition. To test this, mice were …

Evolution Of Natural History Information In The 21st Century – Developing An Integrated Framework For Biological And Geographical Data, Deborah A. Reusser, Henry Lee Ii

United States Environmental Protection Agency: Publications

Threats to marine and estuarine species operate over many spatial scales, from nutrient enrichment at the watershed/estuarine scale to invasive species and climate change at regional and global scales. To help address research questions across these scales, we provide here a standardized framework for a biogeographical information system containing queriable biological data that allows extraction of information on multiple species, across a variety of spatial scales based on species distributions, natural history attributes and habitat requirements. As scientists shift from research on localized impacts on individual species to regional and global scale threats, macroecological approaches of studying multiple species over …

Effects Of Biologically-Active Chemical Mixtures On Fish In A Wastewater-Impacted Urban Stream, Larry B. Barber, Gregory K. Brown, Todd G. Nettesheim, Elizabeth W. Murphy, Stephen E. Bartell, Heiko L. Schoenfuss

United States Environmental Protection Agency: Publications

Stream flow in urban aquatic ecosystems often is maintained by water-reclamation plant (WRP) effluents that contain mixtures of natural and anthropogenic chemicals that persist through the treatment processes. In effluent-impacted streams, aquatic organisms such as fish are continuously exposed to biologically-active chemicals throughout their life cycles. The North Shore Channel of the Chicago River (Chicago, Illinois) is part of an urban ecosystem in which >80% of the annual flow consists of effluent from the North Side WRP. In this study, multiple samplings of the effluent and stream water were conducted and fish (largemouth bass and carp) were collected on 2 …

2011 Nebraska Water Monitoring Programs Report, Marty Link

Nebraska Department of Environmental Quality: Reports

The Nebraska Department of Environmental Quality (NDEQ) is charged with monitoring, assessing, and to the extent possible, managing the state’s water resources. The purpose of this work is to protect and maintain good quality water and encourage or execute activities to improve poor water quality. Monitoring is done on the over 18,000 miles of flowing rivers and streams, our greater than 280,000 acres of surface water in lakes and reservoirs, and the vast storage of groundwater in Nebraska’s aquifers.

Raiphy: Phylogenetic Classification Of Metagenomics Samples Using Iterative Refinement Of Relative Abundance Index Profiles, Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hinrichs, Khalid Sayood

Department of Electrical and Computer Engineering: Faculty Publications

Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diverse nature of microbiomes, the length of the assemblies obtained can vary between a few hundred bp to a few hundred Kbp. Current taxonomic classification algorithms provide accurate classification for long contigs or for short fragments from organisms that have close relatives with annotated genomes. These are significant limitations for metagenome analysis because of the complexity of microbiomes and the paucity of existing annotated genomes.

Results: We propose a robust taxonomic classification method, RAIphy, that …