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Evaluating Population Genetic Structure And Potential Genomic Signals Of Natural Selection In A Migratory Songbird (Protonotaria Citrea), Tyler A. Hohenstein

Theses and Dissertations

In this study I attempted to further resolve the population genetic structure in the Prothonotary Warbler (Protonotaria citrea), and conducted an outlier SNP analysis and exploratory gene ontology analysis to investigate potential ongoing natural selection in the species. This analysis of population structure confirms previous work by DeSaix et al. (2019), where weak population structure was observed between eastern sites along the Atlantic Coastal Plain, and western sites in the Mississippi Alluvial Valley, possibly due to a genetic discontinuity across the Appalachian Mountains. I conducted two forms of outlier SNP analyses, a principal component analysis (PCA)-based approach to identify SNPs …

A Comparison Of Wildfire Adaptive Traits In Juvenile Conifers Of The Northern Rockies, Andie Sonnen

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Wildfire is an importance disturbance that continues to shape the ecosystems of the northern Rockies through varying patterns of frequency and intensity. Due to historical fire suppression and the hotter and drier conditions brought upon by anthropogenic climate change, wildfire frequency and intensity is increasing. These increases will alter vegetation structure and composition, but the degree to which is unknown.

Individual plant traits can offer insight into how these vegetation communities will shift, especially the particular traits that reduce fire-related mortality. To survive wildfires, juvenile northern conifers employ two strategies: increasing their bark thickness and increasing their crown height. To …

On The Need For New Measures Of Phylogenomic Support, Robert C. Thomson, Jeremy M. Brown

Faculty Publications

The scale of data sets used to infer phylogenies has grown dramatically in the last decades, providing researchers with an enormous amount of information with which to draw inferences about evolutionary history. However, standard approaches to assessing confidence in those inferences (e.g., nonparametric bootstrap proportions [BP] and Bayesian posterior probabilities [PPs]) are still deeply influenced by statistical procedures and frameworks that were developed when information was much more limited. These approaches largely quantify uncertainty caused by limited amounts of data, which is often vanishingly small with modern, genome-scale sequence data sets. As a consequence, today's phylogenomic studies routinely report near-complete …

Regenerative Agriculture Effects On Invertebrate And Bird Communities And Insect-Provided Ecosystem Services, Alex Michels

Electronic Theses and Dissertations

Conventional agricultural practices can have unintended consequences on the environment and wildlife. Insects and birds are declining at rapid rates around the world, and the current conventional agricultural paradigm is a major driver through habitat loss and the intensification of production. Invertebrates in agroecosystems provide services to both farmers and the rest of society. Regenerative systems may promote the functioning of an agroecosystem by influencing invertebrate abundance, diversity, and ecosystem services and mitigate bird and insect declines through conservation practices that increase soil health, reduce disturbances, and increase biological diversity. Here I address knowledge gaps of the effects of regenerative …

Eastern Redcedar (Juniperus Virginiana L.) Encroachment On South-Central South Dakota Rangelands: Impact On Plant Communities, Austin K. Domeier

Electronic Theses and Dissertations

Grasslands historically covered 46 million km2 of Earth’s surface representing nearly 42% of the living vegetation. Encroachment of woody species onto grasslands and savannas is a widely researched global phenomenon, with eastern redcedar (ERC) (Juniperus virginiana L.) trees being the most prominent woody encroacher in the Northern Great Plains (NGP) due to the lack of prescribed fire and planted ERC escaping from shelterbelts. This encroachment poses a threat to native plant communities in terms of their reproduction, regeneration, and diversity. ERC are fierce competitors and can establish in most soil types, are drought tolerant, and prolific seed reproducers. These qualities …

Living In A Gradient: The Influence Of Water Temperature Variation On Development, Settling Time And Survival Of Pallid Sturgeon Larvae In The Missouri River, Maria Elizabeth Erceg

Electronic Theses and Dissertations

Pallid Sturgeon (Scaphirhynchus albus) are a federally endangered species experiencing widespread reproduction and recruitment failures. Recruitment failure is hypothesized to be caused by habitat modifications made to the Missouri River that disrupt connectivity and alter temperature profiles downstream of constructed dams. Hypolimnetic releases from Missouri River dams affect the temperature downstream, creating colder conditions during the downstream drifting phase for dispersing larvae. Understanding the influence of water temperature changes on larval development is crucial for recovery efforts. In this study, we evaluated the effects of water temperature daily heating rate on energy use, settling behavior, and growth rate of endogenously …

The Naming Of Homo Bodoensis By Roksandic And Colleagues Does Not Resolve Issues Surrounding Middle Pleistocene Human Evolution, Eric Delson, Chris Stringer

Publications and Research

Roksandic et al. (2022) proposed the new species name Homo bodoensis as a replacement name for Homo rhodesiensis Woodward, 1921, because they felt it was poorly and variably defined and was linked to sociopolitical baggage. However, the International Code of Zoological Nomenclature includes regulations on how and when such name changes are allowed, and Roksandic et al.'s arguments meet none of these requirements. It is not permitted to change a name solely because of variable (or erroneous) later use once it has been originally defined correctly, nor can a name be modified because it is offensive to one or more …

Spatio-Temporal Movement Patterns Of Sub-Adult Adfluvial Bull Trout, Aimee Taylor

All Master's Theses

Bull Trout in the Yakima River basin of Washington are primarily adfluvial, often using managed lakes as habitat. Kachess Lake, composed of Big and Little Kachess Lakes, is managed by the Bureau of Reclamation (BOR) for water storage. BOR plans to build a structure that can withdraw an additional 200,000 acre-feet of water in drought years, which would disconnect the two basins for multiple years. This study examined the spatio-temporal movement of sub-adult Bull Trout in Kachess Lake to understand distribution patterns and the effects of environmental variables. We sought to answer 1) does time (week of the year), diel …

Effects Of Buried Wood On The Development Of Populus Tremuloides On Various Oil Sands Reclamation Soils, Kaitlyn E. Trepanier, Laura Manchola-Rojas, Bradley D. Pinno

Aspen Bibliography

Buried wood is an important but understudied component of reclamation soils. We examined the impacts of buried wood amounts and species on the growth of the common reclamation tree species trembling aspen (Populus tremuloides). In a greenhouse study, aspen seedlings were planted into four soil types, upland derived fine forest floor-mineral mix (fFFMM), coarse forest floor-mineral mix (cFFMM), and lowland derived peat and peat-mineral mix (PMM), that were mixed with either aspen or pine wood shavings at four concentrations (0%, 10%, 20% and 50% of total volume). Height and diameter growth, chlorophyll concentration, and leaf and stem biomass were measured. …

Artificial Intelligence System For Automatic Imaging, Quantification, And Identification Of Arthropods In Leaf Litter And Pitfall Samples, Pierce Helton, Khoa Luu, Ashley Dowling

Inquiry: The University of Arkansas Undergraduate Research Journal

It is well known that arthropods are the most diverse and abundant eukaryotic organisms on the planet. Museum and research collections have huge insect accumulations from expeditions conducted over history that contain specimens of both temporal and spatial value, including hundreds of thousands of species. This biodiversity data is inaccessible to the research community, resulting in a vast amount of “dark data”. The primary objective of this study is to develop an artificial intelligence-driven system for specimen identification that greatly minimizes the time and expertise required to identify specimens in atypical environments. Successful development will have profound impacts on both …

Management Plan For Reducing Wolverine (Gulo Gulo) Habitat Fragmentation In Canada: Travel Corridors Between Tonsa Peak And Stuart Knob, Alison Keister

Research Awards

No abstract provided.

Understanding Caribou Population Cycles, Jack R. St. John

Undergraduate Theses, Professional Papers, and Capstone Artifacts

The complex population dynamics of caribou (Rangifer tarandus) were studied to determine the patterns of their population cycles and the processes driving them. It is well established, via previous archaeological research and Indigenous knowledge, that large migrating caribou herds found in and around the tundra at northern latitudes experience population boom and busts roughly every several decades. However, the processes driving the dynamics of these cycles are relatively unknown, which makes managing caribou herds for recreational and subsistence harvests difficult. It has been hypothesized that a combination of intrinsic and extrinsic factors shape these cycles, with density-dependence, predation, …

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 1. Model Development And Verification, Daphne M. Munroe, Eric N. Powell, John M. Klinck, Andrew M. Scheld, Sarah Borsetti, Jennifer Beckensteiner, Eileen E. Hofmann

CCPO Publications

Competing pressures imposed by climate-related warming and offshore development have created a need for quantitative approaches that anticipate fisheries responses to these challenges. This study used a spatially explicit, ecological-economic agent-based model integrating dynamics associated with Atlantic surfclam stock biology, decision-making behavior of fishing vessel captains, and fishing fleet behavior to simulate stock biomass, and fishing vessel catch, effort and landings. Simulations were implemented using contemporary Atlantic surfclam stock distributions and characteristics of the surfclam fishing fleet. Simulated distribution of fishable surfclam biomass was determined by a spatially varying mortality rate, fishing by the fleet was controlled by captain decisions …

A Stillness In The Desert? Engaging The Public Through An Immersive Exploration Of Southwest Soundscapes, Julian Kilker, Thomas Bjelic

Creative Collaborations

The pandemic highlighted the anthropocentric nature of soundscapes, while the recent popularity of electric cars, quadcopters, and “noise cancellation” earbuds demonstrated how consumer products can rapidly change our awareness of sound. While light pollution is already extensively addressed in scholarly research, popular works such as The End of Night, and public engagement such as The International Dark Sky Association, the complex interplay of sound, natural resources, and public engagement is still emerging, particularly in creative fields.

Two UNLV scholars and artists are collaborating on this project: Julian Kilker, who specializes in visual and emerging technology research, and Tom Bjelic, who …

Spatiotemporal Relationships Of Coyotes And Free-Ranging Domestic Cats As Indicators Of Conflict In Culver City, California, Rebecca N. Davenport, Melinda Weaver, Katherine C. B. Weiss, Eric G. Strauss

Center for Urban Resilience Scholarship

As habitat generalists, urban coyote (Canis latrans) populations often utilize an abundance of diverse food sources in cities. Within southern California, domestic cats (Felis catus) comprise a higher proportion of coyote diets than in other studied urban areas throughout the United States. However, it is unclear which ecological factors contribute to higher rates of cat depredation by coyotes in this region. While previous research suggests that coyote presence may have a negative effect on free-ranging domestic cat distributions, few studies have determined whether urban green spaces affect coyote or free-ranging domestic cat occurrence and activity within …

Length–Weight Relation For Seven Neotropical Freshwater Fish Species (Actinopterygii) Endemic To Central America, Justin C. Bagley, Maria Florencia Breitman, Jerald B. Johnson

Research, Publications & Creative Work

In the presently reported study, we estimated length–weight relation (LWRs) for seven species of freshwater fishes from Central America. Samples were collected using seines from 60 sites across Nicaragua, Costa Rica, and Panama during field expeditions conducted between 1997 and 2012. The fishes were preserved and transported to the lab, where their total weight (W) was measured (to nearest 0.0001 g) and standard lengths were taken (to nearest 0.01 mm). Data were collected from four livebearers (Poeciliidae), Alfaro cultratus (Regan, 1908), Phallichthys amates (Miller, 1907), Poecilia gillii (Kner, 1863), and Priapichthys annectens (Regan, 1907); the cichlids (Cichlidae), Parachromis dovii (Günther, …

Population Dynamics, Relative Abundance, And Habitat Suitability Of Adult Red Drum (Sciaenops Ocellatus) In Nearshore Waters Of The North-Central Gulf Of Mexico, Crystal Hightower, J. Marcus Drymon, Amanda E. Jefferson, Matthew B. Jargowsky, Emily A. Seubert, Simon Dedman, John Mareska, Sean P. Powers

University Faculty and Staff Publications

In the Gulf of Mexico, the red drum (Sciaenops ocellatus) is an immensely popular sportfish, yet the Gulf of Mexico stock is currently managed as data-limited in federal waters. The results of the federal stock assessment conducted in 2016 for Gulf of Mexico red drum were not recommended for providing management advice. Consequently, we sought to address data gaps highlighted in the assessment by producing up-to- date overall and sex-specific growth models, standardized indices of relative abundance, and predictions of habitat suitability and by updating estimates of natural mortality. Using a time series for the period of 2006–2018, we assigned …

Fish And Invertebrate Use Of Restored Vs. Natural Oyster Reefs In A Shallow Temperate Latitude Estuary, Jonathan H. Grabowski, Christopher J. Baillie, Adam Baukus, Rachael Carlyle, F. Joel Fodrie, Rachel K. Gittman, A. Randall Hughes, David L. Kimbro, Juhyung Lee, Hunter S. Lenihan, Sean P. Powers, Kevin Sullivan

University Faculty and Staff Publications

Coastal marine habitats continue to be degraded, thereby compelling largescale restoration in many parts of the world. Whether restored habitats function similarly to natural habitats and fully recover lost ecosystem services is unclear. In estuaries, oyster reefs have been degraded by multiple anthropogenic activities including destructive fishing practices and reduced water quality, motivating restoration to maintain oyster fisheries and other ecosystem services, often at relatively high cost. We compared fish and invertebrate communities on recently restored (0–1 year post-restoration), older restored (3–4 years post-restoration), and natural oyster reefs to determine if and when restored reefs support functionally similar faunal communities. …

Observations Of Whooping Crane Parental Provisioning Of Chicks, Glenn H. Olsen

Proceedings of the North American Crane Workshop

Crane chicks are dependent on parent birds for provisioning during the first few months of life, but no study has examined this provisioning in detail. In 2014 research staff at the U.S. Geological Survey, Eastern Ecological Science Center (formerly Patuxent Wildlife Research Center), in Laurel, Maryland, made multiple observations of parent whooping cranes (Grus americana) feeding or interacting with their chick during the 3 months from hatching to fledging. Both parents participated in the feeding of the chick and only 1 chick was raised by each pair of parent whooping cranes. Initially feeding frequency was low (0-20 times …

Surveys And Population Estimates Of A Distinctive Subpopulation Of Sandhill Cranes In The Fraser River Lowlands Of British Columbia, Myles M. Lamont

Proceedings of the North American Crane Workshop

A poorly understood subpopulation of sandhill cranes (Grus canadensis) breeds at scattered locations in the lower Fraser River Valley on the south coast of British Columbia. The area also harbors the northernmost population of overwintering sandhill cranes anywhere in its range. While sporadic monitoring has been carried out since the mid-1960s, no formal survey efforts have been attempted for the entire Fraser River lowland subpopulation. During 2014-2019 we collected groundbased survey data on presence and occupation of territories within the study area; this effort was supported by citizen science contributions. On 20 June 2019, we flew a fixed-width, …

Whooping Crane Nest Building In Southwest Indiana, Amy J. Kearns, Hillary L. Thompson, Allisyn-Marie T. Y. Gillet

Proceedings of the North American Crane Workshop

The first documented case of whooping crane (Grus americana) nest building in Indiana is described. During spring 2015, a pair of whooping cranes did not leave their wintering grounds in Gibson County, Indiana, to return to their summering area in Wisconsin. Three nest platforms were discovered after the death of the female crane. To date, this is the only documented example of a whooping crane pair in the reintroduced Eastern Migratory Population (EMP) building nest platforms outside of Wisconsin. Although fidelity to the core nesting areas in Wisconsin is strong, and natal dispersal is usually <30 km, this example from Indiana shows that whooping cranes in the EMP may have the potential to pioneer nesting areas far outside of core reintroduction areas.

Summary Of Mortality Among Captive Cranes At The International Crane Foundation: 2000–2020, Barry K. Hartup, Robert Phillips

Proceedings of the North American Crane Workshop

We reviewed mortalities of captive cranes at the International Crane Foundation (ICF) between 2000 and 2020 to provide broad insights into contemporary factors affecting the collection’s health and survival. Sixty-three deaths were documented in 13 of 15 crane species held in the ICF collection. The mean annual mortality during the study was 2.6% and the mean age (±SD) at death was 28.4 (±12.7) years. The overall total number of deaths of males and females was similar, but there was an association between sex and death of adult versus geriatric (>25 years) cranes (P < 0.01); males were more likely to die at geriatric age than females. Deaths were commonly associated with chronic health and management problems (n = 44, 79%) versus …

Florida Sandhill Crane Relocates Egg During Incubation, Timothy A. Dellinger, Miranda L. Watford, Ronald R. Bielefeld

Proceedings of the North American Crane Workshop

Anecdotal accounts of birds moving their eggs to a new location have been reported in shorebirds, waterfowl, and woodpeckers. We report relocation of an egg, 2 days prior to hatching, by an adult Florida sandhill crane (Grus canadensis pratensis). We do not know why the egg was moved, but egg movement among other species appears to be associated with nest disturbance by humans, animals, or environmental conditions.

Initial Evaluation Of Cyclic Adenosine Monophosphate Enzyme Immunoassay For Use With Crane Semen Samples, Megan E. Brown, Kim Boardman, Katie L. Edwards

Proceedings of the North American Crane Workshop

The management of ex situ and in situ populations of many wildlife species requires detailed knowledge of a species’ reproductive biology. For species such as cranes, where artificial insemination is a critical component of ex situ management strategies, understanding normal sperm function is especially important. Previous research has shown that captive cranes exhibit highly variable production and quality of semen samples produced by individual males and high levels of variation of cell concentration and motility across different species. Cyclic adenosine monophosphate (cyclic AMP) has been implicated in regulating sperm function, such as cell motility, and may affect an individual’s ability …

How Stressful Is It To Move? Whooping Crane Glucocorticoid Response During Facility Transfer, Megan E. Brown, Christopher Martin, Christopher Crowe, Sprina Lui, Nucharin Songsasen

Proceedings of the North American Crane Workshop

The ability to transfer animals between different facilities for genetic management is a critical component to the success of any cooperatively managed captive animal population despite the high cost and the need for a high level of coordination in logistical planning. Two issues of concern are the magnitude of potential stress responses incurred during shipment of adult cranes to a new facility and the duration of elevated glucocorticoid production during the acclimation periods. The objectives of this project were to assess adrenal responses of whooping cranes (Grus americana) during transfer from the Patuxent Wildlife Research Center (PWRC) to …

Wetlandology: A Kid's Book About Wetlands, Grace Gaard, Ted Lagrange

Nebraska Game and Parks Commission: Publications

What is a Wetland? You might think that any land that is wet would be a wetland, right? But if the occurrence of water was the only thing that made a wetland a wetland, then deeper parts of oceans and rivers would be considered wetlands. And we know that is not true! So, what actually makes a wetland a wetland? Wetlands are defined by three things:

1. Soil

2. Plants

3. Hydrology

Wetlands are spread throughout Nebraska, but it is useful to identify some of the larger wetland complexes in the state. Wetlands can be found everywhere! All rivers and …

Guide To Nebraska's Wetlands And Their Conservation Needs, Third Edition, 2022, Ted Lagrange

Nebraska Game and Parks Commission: Publications

Wetlands: a source of great interest, and at times conflict. Wetlands represent different things to different people. To some people they may be considered shallow, muddy nuisances whereas to others they are considered to be wonderful, varied, and productive assets. This is because wetlands take on many roles as part of an elaborate and dynamic system. Understanding wetlands requires understanding the complex and varying roles they can play. To aid in this understanding, this guide defines wetlands, discusses their importance and dynamics, identifies threats and losses, describes conservation programs, and takes an in-depth look at Nebraska’s regional wetland complexes.

Nebraska’s …

Mortality In Interspecific Hybrids Of Nasonia Vitripennis And Nasonia Giraulti, Bonnie Cobb

College of Graduate Studies: Theses & Dissertations

Nasonia is a parasitoid wasp genus that serves as an emerging model for studying speciation due to an incompatibility between nuclear and mitochondrial genomes between sister taxa. Short generation times, easy rearing in a lab setting, producing large amounts of progeny, and whole genome sequencing make Nasonia is an excellent candidate for studying incomplete reproductive isolation. Nasonia have five chromosomes and exhibit haplo-diploid sex determination in which fertilized eggs develop into diploid females and unfertilized eggs develop into haploid males. Recessive phenotypes are hidden in diploid females but are laid bare in haploid males as there is no interaction between …

Validation Of Edna Metabarcoding : A Comparison To Traditional Survey Methods In Ozark Streams, Veronica Marian Lee

Masters Theses

Environmental DNA (eDNA) sampling provides a method for assessing fish communities that has potential as a supplement to traditional sampling methods due to its ability to save time as well as its non-invasive nature. This is a method in which from just one sample, eDNA from multiple individual species are able to be sequenced in tandem and the resulting reads identified to describe a community. In order to evaluate this technique and its efficacy for monitoring fish community diversity, we collected water samples alongside surveys performed by the Missouri Department of Conservation sampling program in summers 2020-21. DNA were extracted …

The Sweet Smell Of Mystery: The Scent Glands Of Oncopeltus Fasciatus, Despina Tsitlakidou

Wayne State University Theses

Scent glands (ScGs) are defensive glands that are found among a wide variety of insect orders. These glands represent a specialized function of the exocrine system; however, the developmental mechanism remains unclear. Previous functional studies of the endocrine glands revealed that the endocrine and tracheal systems utilize similar genetic regulatory networks which indicate that these systems have common primordia. In Drosophila, sal is localized in the prothoracic gland while in Oncopeltus the gene is localized in the duct cells of the abdominal scent glands (Hanna & Popadić, 2020; Sánchez-Higueras et al., 2014). RNAi mediated knockdown of sal resulted in significant …