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Articles 15151 - 15180 of 19711

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Systematics Of The Tribe Stipeae (Gramineae) Using Molecular Data, Surrey Jacobs, Randall Bayer, Joy Everett, Mirta Arriaga, Mary Barkworth, Alexandru Sabin-Badereau, Amelia Torres, Francisco Vázquez, Neil Bagnall Dec 2007

Systematics Of The Tribe Stipeae (Gramineae) Using Molecular Data, Surrey Jacobs, Randall Bayer, Joy Everett, Mirta Arriaga, Mary Barkworth, Alexandru Sabin-Badereau, Amelia Torres, Francisco Vázquez, Neil Bagnall

Aliso: A Journal of Systematic and Floristic Botany

Internal transcribed spacer (ITS) sequences have been determined for a wide range of stipoid grasses (Poaceae, Pooideae, Stipeae). Nardus was confirmed as the most appropriate outgroup. Anisopogon is consistently included among the stipoid genera. Lithachne and Oryza form a clade and are clearly not close to Stipeae, and there is no support for including Brachyelytrum within Stipeae. Ampelodesmos and Diarrhena do appear among the core taxa in some analyses, but their positions are unstable and the evidence for retaining them is limited. So far there is inadequate support for rejecting them from Stipeae, so they should be included in any …

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The Juncaceae-Cyperaceae Interface: A Combined Plastid Sequence Analysis, Eleanor Jones, David A. Simpson, Trevor R. Hodkinson, Mark W. Chase, John A. N. Parnell Dec 2007

The Juncaceae-Cyperaceae Interface: A Combined Plastid Sequence Analysis, Eleanor Jones, David A. Simpson, Trevor R. Hodkinson, Mark W. Chase, John A. N. Parnell

Aliso: A Journal of Systematic and Floristic Botany

Phylogenetic relationships of Juncaceae and related families of Cyperales were investigated using DNA sequence data from the plastid rps16 intron, trnL intron, and trnL–F intergenic spacer. Results using parsimony analysis of the aligned matrices find Juncaceae and Cyperaceae to be monophyletic families, which form a clade sister to a monophyletic Thurniaceae that includes Prionium (Prioniaceae), all three clades with 100% bootstrap support. Within Juncaceae, the genus Luzula is monophyletic with 100% bootstrap support and sister to the rest of Juncaceae. Further groupings within the family indicate that the genus Juncus may be monophyletic only with the inclusion …

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The Schoenus Spikelet: A Rhipidium? A Floral Ontogenetic Answer, Alexander Vrijdaghs, Paul Goetghebeur, Erik Smets, Pieter Caris Dec 2007

The Schoenus Spikelet: A Rhipidium? A Floral Ontogenetic Answer, Alexander Vrijdaghs, Paul Goetghebeur, Erik Smets, Pieter Caris

Aliso: A Journal of Systematic and Floristic Botany

The inflorescence unit of Schoenus nigricans and S. ferrugineus consists of a zigzag axis and distichously arranged bracts, each of which may or may not subtend a bisexual flower. Each flower seems to terminate a lateral axis. These features have led to a controversy about the nature of the inflorescence unit, particularly whether it is monopodial or sympodial. It was often seen as a pseudospikelet composed of a succession of lateral axes, each subtended by the prophyll of the previous axis, as in a rhipidium. Many authors, however, consider the inflorescence units of all Cyperaceae to be indeterminate, racemose, actual …

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Grass Phylogeny And Classification: Conflict Of Morphology And Molecules, Bryan K. Simon Dec 2007

Grass Phylogeny And Classification: Conflict Of Morphology And Molecules, Bryan K. Simon

Aliso: A Journal of Systematic and Floristic Botany

The grass family (Poaceae) has been recognized as a unique lineage for more than 200 years, based initially on characters of inflorescence and spikelet morphology and corroborated by anatomical and other features in the latter half of the twentieth century. There have been a number of attempts to derive a phylogeny of sections of the family from structural (morphological and anatomical) characters. However, more recently the Grass Phylogeny Working Group (2001) applied cladistic principles to the whole family using molecular and structural characters. This study produced a single most-parsimonious tree from six molecular sequence data sets, chloroplast restriction site data, …

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Phenotypic Plasticity Of Reproduction In Schizachyrium Scoparium (Poaceae) Populations In Relation To Ecological History, Elizabeth M. Obee, James A. Quinn Dec 2007

Phenotypic Plasticity Of Reproduction In Schizachyrium Scoparium (Poaceae) Populations In Relation To Ecological History, Elizabeth M. Obee, James A. Quinn

Aliso: A Journal of Systematic and Floristic Botany

Genetic differentiation in reproduction in the wide-ranging Schizachyrium scoparium (Poaceae) has been demonstrated in uniform gardens. However, the fine-tuning of flowering phenology and biomass allocation in relation to spatial and temporal fluctuations in the local environment is best accomplished by plastic responses to local variability. An earlier central New Jersey study suggested that S. scoparium populations in old fields of 2 to 40 years differed in plasticity. To test this apparent effect of ecological history on the development of different levels of plasticity, genotypes were collected from high- and low-fertility sites in New Jersey (forest biome) and in Oklahoma (grassland …

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Phylogeny Of Triticeae (Poaceae) Based On Three Organelle Genes, Two Single-Copy Nuclear Genes, And Morphology, Ole Seberg, Gitte Petersen Dec 2007

Phylogeny Of Triticeae (Poaceae) Based On Three Organelle Genes, Two Single-Copy Nuclear Genes, And Morphology, Ole Seberg, Gitte Petersen

Aliso: A Journal of Systematic and Floristic Botany

Triticeae are renowned for their complicated taxonomy, but their phylogeny is equally intricate and perplexing, and remains largely unresolved. Based on morphology and nucleotide sequences from two plastid genes (rbcL, rpoA), one mitochondrial gene (coxII), and two single-copy nuclear genes (DMC1, EF-G), the most comprehensive hypothesis (both with respect to taxa and data points) of the phylogeny of diploid Triticeae to date is presented. The incongruence length difference tests clearly indicate that the four logical data partitions (morphology and the three genome compartments) are mutually incongruent, except the mitochondrial and nuclear sequences. …

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Preliminary Isozyme Evidence On The Hybrid Origin And Diploid Progenitors Of Bromus Pectinatus (Poaceae), Tatjana Oja Dec 2007

Preliminary Isozyme Evidence On The Hybrid Origin And Diploid Progenitors Of Bromus Pectinatus (Poaceae), Tatjana Oja

Aliso: A Journal of Systematic and Floristic Botany

Isozyme electrophoresis was used to study the origin of Bromus pectinatus (Poaceae, Pooideae). The morphological characteristics of B. pectinatus are intermediate between B. japonicus of sect. Bromus and B. tectorum of sect. Genea. Previous authors have suggested that sects. Bromus and Genea may be linked through B. pectinatus, a species that has been classified in sect. Bromus, though this placement has been questioned. Isozyme data support the allotetraploid nature of B. pectinatus and its position between sects. Bromus and Genea. Several heterozymes are consistent with the view that B. pectinatus may have arisen through polyploidization of …

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Eragrostis (Poaceae): Monophyly And Infrageneric Classification, Amanda L. Ingram, Jeff J. Doyle Dec 2007

Eragrostis (Poaceae): Monophyly And Infrageneric Classification, Amanda L. Ingram, Jeff J. Doyle

Aliso: A Journal of Systematic and Floristic Botany

Eragrostis is a large genus in subfamily Chloridoideae of Poaceae. Recent phylogenetic analyses have suggested that the genus may not be monophyletic, that some of its segregate genera may be better placed within Eragrostis, and that current infrageneric classifications may not represent monophyletic groups. We have used molecular sequence data from the plastid locus rps16 and the nuclear gene waxy from a broad sample of Eragrostis species and representatives of six of the seven segregate genera to address these issues. We found that Eragrostis is monophyletic with the inclusion of several of the segregates, including Acamptoclados, Diandrochloa …

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Prey Naiveté: Evolutionary And Ecological Implications, Jonathan G. Cox Dec 2007

Prey Naiveté: Evolutionary And Ecological Implications, Jonathan G. Cox

All-Inclusive List of Electronic Theses and Dissertations

Despite its ecological importance, the concept of prey naivete has become a biological truism that receives little study. I explored the evolution of naivete and its likely influence on two major ecological patterns: a) the historically greater destructiveness of freshwater predator introductions, and b) the greater strength of aquatic trophic cascades. In a review of the ecological literature, I demonstrate that the conditions for the evolution of naivete (isolation) exist in freshwater habitats at multiple spatial scales. In addition, I show that freshwater prey exhibit naivete which could be responsible for the high impacts of freshwater predator introductions. I then …

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Phylogeny Of The Grasses (Poaceae) Revisited, Melvin R. Duvall, Jerrold I Davis, Lynn G. Clark, Jeffrey D. Noll, Douglas H. Goldman, J. Gabriel Sánchez-Ken Dec 2007

Phylogeny Of The Grasses (Poaceae) Revisited, Melvin R. Duvall, Jerrold I Davis, Lynn G. Clark, Jeffrey D. Noll, Douglas H. Goldman, J. Gabriel Sánchez-Ken

Aliso: A Journal of Systematic and Floristic Botany

The most robust previously published phylogeny for the overall structure of the grass family (Poaceae) shows three early diverging lineages and two major derived clades, the BEP clade and the PACCAD clade (Grass Phylogeny Working Group 2001). A few key taxa were incompletely sampled, however, and support for the BEP clade was moderate at best and relationships among the major lineages within the PACCAD clade remained unresolved. In addition, recent studies indicated that the sister group to Poaceae may be Joinvilleaceae and/or Ecdeiocoleaceae, the latter of which were not previously sampled. In this study, missing structural data were determined and …

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Phylogeny And Biogeography Of Endemic Festuca (Poaceae) From New Zealand Based On Nuclear (Its) And Chloroplast (Trnl–Trnf) Nucleotide Sequences, Kelvin M. Lloyd, Angela M. Hunter, David A. Orlovich, Suzanne J. Draffin, Alan V. Stewart, William G. Lee Dec 2007

Phylogeny And Biogeography Of Endemic Festuca (Poaceae) From New Zealand Based On Nuclear (Its) And Chloroplast (Trnl–Trnf) Nucleotide Sequences, Kelvin M. Lloyd, Angela M. Hunter, David A. Orlovich, Suzanne J. Draffin, Alan V. Stewart, William G. Lee

Aliso: A Journal of Systematic and Floristic Botany

We investigated the phylogenetic relationships of the endemic New Zealand (NZ) species of Festuca (Poaceae, Pooideae) by assessing sequence variation from the nuclear internal transcribed spacers (ITS) and a chloroplast intergenic spacer (trnL–trnF) and by measuring DNA content using flow cytometry. The ITS and trnL–trnF data sets were congruent in showing that the NZ species of Festuca have two origins. One group, containing F. coxii, F. luciarum, F. multinodis, and F. ultramafica, is closely related to Festuca sect. Aulaxyper. The other group includes a clade of five endemic …

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Relationships Among Some Populations Of Anthoxanthum Alpinum And A. Odoratum (Poaceae, Pooideae): A Morphological/Anatomical Approach, Manuel Pimentel, Elvira Sahuquillo Dec 2007

Relationships Among Some Populations Of Anthoxanthum Alpinum And A. Odoratum (Poaceae, Pooideae): A Morphological/Anatomical Approach, Manuel Pimentel, Elvira Sahuquillo

Aliso: A Journal of Systematic and Floristic Botany

The genus Anthoxanthum s.l. (including Hierochloë) (Poaceae, Pooideae, Aveneae) comprises 35–50 species and has a cosmopolitan distribution. Anthoxanthum alpinum was described as a diploid perennial that is distributed in northern Eurasia and in the high mountains of central and eastern Europe. Difficulties in finding reliable morphological differences between this taxon and the widespread tetraploid A. odoratum have resulted in taxonomists treating them as conspecific, despite the cytological differentiation. The purpose of this study was to provide information that may help clarify the relationships between these taxa. Macromorphologial, micromorphological, and anatomical data were gathered and analyzed for 14 populations representing …

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Systematics Of Bromelioideae (Bromeliaceae)—Evidence From Molecular And Anatomical Studies, Ralf Horres, Katharina Schulte, Kurt Weising, Georg Zizka Dec 2007

Systematics Of Bromelioideae (Bromeliaceae)—Evidence From Molecular And Anatomical Studies, Ralf Horres, Katharina Schulte, Kurt Weising, Georg Zizka

Aliso: A Journal of Systematic and Floristic Botany

A reconstruction of the phylogeny of Bromeliaceae based on sequence data from three noncoding chloroplast DNA markers (trnL intron, trnT–trnL, and trnT–trnF intergenic spacer [IGS]) is presented, including 26 genera and 33 species. Relationships of Bromelioideae and phylogeny within this subfamily were analyzed in more detail on the basis of two of these markers (trnL intron and trnL–trnF IGS) using a set of 37 genera/74 species of Bromeliaceae, including 28 genera/60 species of Bromelioideae. Sister group relationships of Bromelioideae were not resolved with sufficient reliability, but the …

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Phylogeny Of Abildgaardieae (Cyperaceae) Inferred From Its And Trnl–F Data, Kioumars Ghamkhar, Adam D. Marchant, Karen L. Wilson, Jeremy J. Bruhl Dec 2007

Phylogeny Of Abildgaardieae (Cyperaceae) Inferred From Its And Trnl–F Data, Kioumars Ghamkhar, Adam D. Marchant, Karen L. Wilson, Jeremy J. Bruhl

Aliso: A Journal of Systematic and Floristic Botany

Within the tribe Abildgaardieae, the relationships between Fimbristylis and its relatives have not been certain, and the limits of Fimbristylis have been unclear, with Bulbostylis and Abildgaardia variously combined with it and each other. The relationships and limits of tribes Abildgaardieae and Arthrostylideae and their genera were evaluated across 49 representative species using parsimony and maximum likelihood analyses of ITS (nuclear ribosomal) and trnL–F (plastid) DNA sequence data separately and combined. The evolutionary reconstructions derived from sequences of cpDNA and nrDNA disagree about the position of tribe Arthrostylideae relative to Abildgaardieae; Arthrostylis and Actinoschoenus are either nested within Abildgaardieae …

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Phylogeny And Historical Ecology Of Rhodocoma (Restionaceae) From The Cape Floristic Region, Christopher R. Hardy, H. Peter Linder Dec 2007

Phylogeny And Historical Ecology Of Rhodocoma (Restionaceae) From The Cape Floristic Region, Christopher R. Hardy, H. Peter Linder

Aliso: A Journal of Systematic and Floristic Botany

A macroevolutionary analysis of macroecological relationships in Rhodocoma revealed a complex history of rapid ecological divergence, as well as genetic isolation via shifts in flowering times. The rate and extent of divergence observed among even the youngest of species pairs indicated that the selective forces driving these processes are strong enough to effect substantial amounts of ecological change in relatively short periods of time, and are potentially important factors promoting the origin and persistence of species diversity not only in Rhodocoma, but also the African Restionaceae as a whole. These results also suggest that the rate and extent of …

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Large Trees, Supertrees, And Diversification Of The Grass Family, Trevor R. Hodkinson, Nicolas Salamin, Mark W. Chase, Yanis Bouchenak-Khelladi, Stephen A. Renvoize, Vincent Savolainen Dec 2007

Large Trees, Supertrees, And Diversification Of The Grass Family, Trevor R. Hodkinson, Nicolas Salamin, Mark W. Chase, Yanis Bouchenak-Khelladi, Stephen A. Renvoize, Vincent Savolainen

Aliso: A Journal of Systematic and Floristic Botany

Phylogenetic studies of grasses (Poaceae) are advanced in comparison with most other angiosperm families. However, few studies have attempted to build large phylogenetic trees of the family and use these for evaluating patterns of diversification or other macroevolutionary hypotheses. Two contrasting approaches can be used to generate large trees: supermatrix analyses and supertrees. In this paper, we evaluated the suitability of each of these methods for the study of patterns and processes of evolution in the grasses. We collected data from DDBJ/EMBL/GenBank to determine sequence availability and asked how far we are from a complete generic-level phylogenetic tree of the …

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Allopolyploids Of The Genus Elymus (Triticeae, Poaceae): A Phylogenetic Perspective, Roberta J. Mason-Gamer Dec 2007

Allopolyploids Of The Genus Elymus (Triticeae, Poaceae): A Phylogenetic Perspective, Roberta J. Mason-Gamer

Aliso: A Journal of Systematic and Floristic Botany

The wheat tribe, Triticeae, includes many genomically distinct polyploid taxa. Elymus is an entirely allopolyploid genus, with all species containing the St genome of Pseudoroegneria. The St genome may be combined with one or more distinct genomes representing multiple, diverse diploid donors from throughout the tribe. This study includes a simultaneous phylogenetic analysis of new and previously published data from several distinct Elymus groups, including North American and Eurasian StStHH tetraploids, in which the H genome is derived from Hordeum, Eurasian StStYY tetraploids, in which the Y genome is derived from an unknown donor, and a putative StStStStHH …

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Molecular Phylogenetics Of Bromus (Poaceae: Pooideae) Based On Chloroplast And Nuclear Dna Sequence Data, Jeffery M. Saarela, Paul M. Peterson, Ryan M. Keane, Jacques Cayouette, Sean W. Graham Dec 2007

Molecular Phylogenetics Of Bromus (Poaceae: Pooideae) Based On Chloroplast And Nuclear Dna Sequence Data, Jeffery M. Saarela, Paul M. Peterson, Ryan M. Keane, Jacques Cayouette, Sean W. Graham

Aliso: A Journal of Systematic and Floristic Botany

We conducted a phylogenetic analysis to characterize relationships among Bromus and test the monophyly of five of the seven morphologically distinct groups within Bromus (Poaceae: Pooideae) that have been treated as sections, subgenera, or genera. We sequenced the chloroplast trnL (UAA) intron, the 3'-end of the chloroplast ndhF gene, and the internal transcribed spacers (ITS) of the nuclear ribosomal DNA region for 46 species that represent a large proportion of the morphological and geographical diversity in the genus. Independent analyses of plastid and nuclear ribosomal data identified several lineages in Bromus, but there is some evidence of …

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Dicliny In Bouteloua (Poaceae: Chloridoideae): Implications For The Evolution Of Dioecy, Michael S. Kinney, J. Travis Columbus, Elizabeth A. Friar Dec 2007

Dicliny In Bouteloua (Poaceae: Chloridoideae): Implications For The Evolution Of Dioecy, Michael S. Kinney, J. Travis Columbus, Elizabeth A. Friar

Aliso: A Journal of Systematic and Floristic Botany

The New World grass genus Bouteloua (Chloridoideae: Cynodonteae) comprises 57 species, 13 of which produce unisexual spikelets and hence are diclinous. Andromonoecy, gynodioecy, monoecy, trimonoecy, and dioecy all occur in the genus, and ten species are known to express more than one of these breeding systems. Employing a phylogenetic estimate based on parsimony analysis of DNA sequences from the ITS (nrDNA) and trnL–F (cpDNA) regions representing 35 species of Bouteloua, including ten of 13 diclinous species, we used parsimony character state reconstructions to investigate the evolution of unisexual spikelets and breeding systems. Our specific goals were to estimate …

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Foraging Behavior And Habitat Use By The Carolina Chickadee (Poecile Carolinensis) In West-Central Indiana, Ihan Chen Dec 2007

Foraging Behavior And Habitat Use By The Carolina Chickadee (Poecile Carolinensis) In West-Central Indiana, Ihan Chen

All-Inclusive List of Electronic Theses and Dissertations

I studied the effect of environmental conditions on the foraging behavior of Carolina chickadees (Poecile carolinensis) in Kiewig woods, property of Indiana State University, in West Terre Haute in west-central Indiana. My study method uses Optimal Foraging Theory (Brown 1988) to measure the giving up density (GUD) of Chickadees under different environmental conditions ( different resource abundances, different habitat types, different resource types and different seasons). For my experiment, I set up 24 feeding stations in three kinds of habitats ( open area, secondary growth woods and mature woods) within 4 sites and paired trays in each habitat X site. …

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Seasonal Changes In Thermal Conductance Of Bat Pelage: A Comparison Of The Eastern Red Bat (Lasiurus Borealis) And Big Brown Bat (Eptesicus Fuscus), Daniel Justin Judy Dec 2007

Seasonal Changes In Thermal Conductance Of Bat Pelage: A Comparison Of The Eastern Red Bat (Lasiurus Borealis) And Big Brown Bat (Eptesicus Fuscus), Daniel Justin Judy

All-Inclusive List of Electronic Theses and Dissertations

Two species with different ecologies and natural histories use different morphological characteristics and thermoregulatory strategies to survive seasonal environmental changes. The purpose of this project was to investigate two such species, the eastern red bat (Lasiurus borealis) and big brown bat (Eptesicus fuscus). Red bats roost in the foliage of trees and occasionally leaf litter and have dense fur, as well as a furred interfemoral membrane. These two species differ in their morphology and roosting ecology in that big brown bats are generally larger with less dense fur, no fur on the interfemoral membrane, and are less exposed to environmental …

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Species Invasion Shifts The Importance Of Predator Dependence, Blaine D. Griffen, David G. Delaney Dec 2007

Species Invasion Shifts The Importance Of Predator Dependence, Blaine D. Griffen, David G. Delaney

Faculty Publications

The strength of interference between foraging individuals can influence per capita consumption rates, with important consequences for predator and prey populations and system stability. Here we demonstrate how the replacement of a previously established invader, the predatory crab Carcinus maenas, by the recently invading predatory crab Hemigrapsus sanguineus shifts predation from a species that experiences strong predator interference (strong predator dependence) to one that experiences weak predator interference (weak predator dependence). We demonstrate using field experiments that differences in the strength of predator dependence persist for these species both when they forage on a single focal prey species only (the …

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Occurrence And Biological Effect Of Exogenous Steroids In The Elkhorn River, Nebraska, Usa, Alan S. Kolok, Daniel D. Snow, Satomi Kohno, Marlo K. Sellin, Louis J. Guillette Jr. Dec 2007

Occurrence And Biological Effect Of Exogenous Steroids In The Elkhorn River, Nebraska, Usa, Alan S. Kolok, Daniel D. Snow, Satomi Kohno, Marlo K. Sellin, Louis J. Guillette Jr.

Biology Faculty Publications

Recent studies of surface waters in North America, Japan, and Europe have reported the presence of steroidogenic agents as contaminants. The current study has three objectives: 1) to determine if steroidogenic compounds are present in the Elkhorn River, 2) to determine if sediments collected from the Elkhorn River can act as a source of steroidogenic compounds to aquatic organisms, and 3) to determine if site-specific biological effects are apparent in the hepatic gene expression of fathead minnows. Evidence was obtained using three approaches: 1) deployment of polar organic chemical integrative samplers (POCIS), 2) deployment of caged fathead minnows, and 3) …

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Phylogeny, Adaptive Radiation, And Historical Biogeography Of Bromeliaceae Inferred From Ndhf Sequence Data, Thomas J. Givnish, Kendra C. Millam, Paul E. Berry, Kenneth J. Sytsma Dec 2007

Phylogeny, Adaptive Radiation, And Historical Biogeography Of Bromeliaceae Inferred From Ndhf Sequence Data, Thomas J. Givnish, Kendra C. Millam, Paul E. Berry, Kenneth J. Sytsma

Aliso: A Journal of Systematic and Floristic Botany

Cladistic analysis of ndhF sequences identifies eight major bromeliad clades arranged in ladderlike fashion. The traditional subfamilies Tillandsioideae and Bromelioideae are monophyletic, but Pitcairnioideae are paraphyletic, requiring the description of four new subfamilies, recircumscription of Pitcairnioideae and Navioideae, the sinking of Ayensua, and description of the new genus Sequencia. Brocchinioideae are basalmost, followed by Lindmanioideae, both restricted to the Guayana Shield. Next is an unresolved trichotomy involving Hechtioideae from Central America, Tillandsioideae, and the remaining bromeliads in subfamilies Navioideae, Pitcairnioideae, Puyoideae, and Bromelioideae. Bromeliads arose as C3 terrestrial plants on moist infertile sites in …

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Towards A Comprehensive Survey Of C3 And C4 Photosynthetic Pathways In Cyperaceae, Jeremy J. Bruhl, Karen L. Wilson Dec 2007

Towards A Comprehensive Survey Of C3 And C4 Photosynthetic Pathways In Cyperaceae, Jeremy J. Bruhl, Karen L. Wilson

Aliso: A Journal of Systematic and Floristic Botany

Members of the family Cyperaceae were surveyed by original observation and from the literature to assess the distribution of C3 and C4 photosynthetic pathways in the family. All 107 genera were included in the current sample, with 91 genera assessed as consistently C3 and 11 genera as C4. The genera Abildgaardia, Cyperus, Eleocharis, Fimbristylis, and Rhynchospora are variable for this trait. Of the total number (1474) of specific (1406) and infraspecific (68) taxa sampled, 938 taxa (63%) are C3, 527 taxa (36%) are C4, and nine species …

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A Preliminary Phylogenetic Analysis Of The Grass Subfamily Pooideae (Poaceae), With Attention To Structural Features Of The Plastid And Nuclear Genomes, Including An Intron Loss In Gbssi, Jerrold I Davis, Robert J. Soreng Dec 2007

A Preliminary Phylogenetic Analysis Of The Grass Subfamily Pooideae (Poaceae), With Attention To Structural Features Of The Plastid And Nuclear Genomes, Including An Intron Loss In Gbssi, Jerrold I Davis, Robert J. Soreng

Aliso: A Journal of Systematic and Floristic Botany

Phylogenetic relationships in the grass family (Poaceae), with specific attention to the internal structure of subfamily Pooideae, are analyzed on the basis of nucleotide sequence variation in plastid-encoded genes (matK, ndhF, ndhH, and rbcL). The resulting phylogenetic hypothesis was examined with attention to the taxonomic distributions of two inversions and an insertion/deletion within ndhF, the absence of intron 10 of the nuclear gene GBSSI (waxy), and positions of the boundaries between the Short Single Copy (SSC) region and the neighboring Inverted Repeat (IR) regions of the plastid genome, relative to the endpoints of ndh …

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Phylogenetic Relationships Among The One-Flowered, Determinate Genera Of Bambuseae (Poaceae: Bambusoideae), Lynn G. Clark, Soejatmi Dransfield, Jimmy Triplett, J. Gabriel Sánchez-Ken Dec 2007

Phylogenetic Relationships Among The One-Flowered, Determinate Genera Of Bambuseae (Poaceae: Bambusoideae), Lynn G. Clark, Soejatmi Dransfield, Jimmy Triplett, J. Gabriel Sánchez-Ken

Aliso: A Journal of Systematic and Floristic Botany

Bambuseae (woody bamboos), one of two tribes recognized within Bambusoideae (true bamboos), comprise over 90% of the diversity of the subfamily, yet monophyly of the tribe is generally only moderately supported, and phylogenetic relationships within the tribe are poorly understood. In addition, there appears to be some level of conflict between morphological and molecular data within the tribe. We conducted a parsimony analysis of 43 species of Bambuseae, three of Olyreae (herbaceous bamboos), and two outgroup taxa using morphological and plastid rpl16 intron sequence data to (1) further test the monophyly of Bambuseae, (2) test the monophyly of Chusqueinae …

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Phylogenetics Of Chloridoideae (Gramineae): A Preliminary Study Based On Nuclear Ribosomal Internal Transcribed Spacer And Chloroplast Trnl–F Sequences, J. Travis Columbus, Rosa Cerros-Tlatilpa, Michael S. Kinney, Maria Elena Siqueiros-Delgado, Hester L. Bell, M. Patrick Griffith, Nancy F. Refulio-Rodriguez Dec 2007

Phylogenetics Of Chloridoideae (Gramineae): A Preliminary Study Based On Nuclear Ribosomal Internal Transcribed Spacer And Chloroplast Trnl–F Sequences, J. Travis Columbus, Rosa Cerros-Tlatilpa, Michael S. Kinney, Maria Elena Siqueiros-Delgado, Hester L. Bell, M. Patrick Griffith, Nancy F. Refulio-Rodriguez

Aliso: A Journal of Systematic and Floristic Botany

The phylogeny of Chloridoideae (Gramineae) was inferred from parsimony analyses of DNA sequences from two genomes—the chloroplast trnL intron, trnL 3' exon, and trnL–F intergenic spacer, and the nuclear ribosomal internal transcribed spacer region (ITS1 + 5.8S + ITS2). Eighty species representing 66 chloridoid genera were sampled, including all but four of the native New World genera. Analyses of the individual and combined data sets were performed. The phylogenies were found to be highly congruent. Of the four tribes and seven subtribes of Chloridoideae sensu Clayton and Renvoize (1986) whose phylogenetic status could be tested with our …

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Designation Of A Neotype For Leptodactylus Gracilis (Duméril And Bibron, 1840) (Amphibia: Leptodactylidae), Rafael O. De Sá, A. Dubois, A. Ohler Dec 2007

Designation Of A Neotype For Leptodactylus Gracilis (Duméril And Bibron, 1840) (Amphibia: Leptodactylidae), Rafael O. De Sá, A. Dubois, A. Ohler

Biology Faculty Publications

The examination of the preserved specimens in the herpetological collection of the Museum National d'Histoire Naturelle, along with a review of the original literature, indicates that no extant specimen can be undoubtedly identified as the holotype of Leptodactylus gracilis (DumCri.l and Bibron, 1840). Furthermore, it revealed that the type locality recently assigned to this taxon is in error.

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The Emergence Of Sex, Ursula Goodenough Dec 2007

The Emergence Of Sex, Ursula Goodenough

Biology Faculty Research

Biological traits, the foci of natural selection, are by definition emergent from the genes, proteins, and other “nothing-buts” that constitute them. Moreover, and with the exception of recently emergent “spandrels,” each can be accorded a teleological dimension—each is “for” some purpose conducive to an organism's continuation. Sex, which is “for” the generation of recombinant genomes, may be one of the most ancient and ubiquitous traits in biology. In the course of its evolution, many additional traits, such as gender and nurture, have emerged. Patterns of sexual exchange are the basis for patterns of biological evolution and are central to the …

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