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Modeling To Improve Vegetation-Based Wetland Biological Assessment, Robin C. Jones

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

To meet the requirements of the Clean Water Act (1972), natural resource managers need to be able to detect biological degradation in wetland ecosystems. Biological indices are commonly used by managers to assess wetland biological condition. The accuracy and precision of wetland condition assessments are directly related to the performance of these indices, and biological index performance is thought to be related to how well an index controls for the effects of environmental attributes on biological assemblages. Many plant-based biological indices control for environmental and biological variation through the use of classification schemes that are based on geographic location and …

Ecomorphological And Genetic Investigations Into The Utah Lake, Ut Sucker Complex With Comparisons To The Jackson Lake, Wy Sucker Complex, David D. Cole

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Natural selection within the sucker family of fishes has produced populations including typical benthic (bottom-feeding) suckers (Catostomus) and lakesuckers (Chasmistes), mid-water plankton eaters, in several large western North American lakes. Suckers of intermediate morphology (shape) exist in a continuum of head, mouth, and body characteristics between these two extremes. All current lakesuckers are listed Endangered, and population declines have been attributed in part to hybridization with their Catostomus neighbors.

Chapter 2 describes the investigation of the relationship between morphology and genetics of June sucker, a lakesucker, and Utah sucker, a benthic sucker, in Utah Lake, Utah. …

Usda Forest Service Perspectives On Forest Management In A Changing Climate, Jamie E. Laatsch

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As climate change becomes more problematic for the Forest Service (FS) and other federal land management agencies in the U.S., it has become increasingly important to understand how their employees view climate change and related challenges. This study examined how FS employees in the Intermountain West view forest management in the face of climate change, what barriers and opportunities they see in terms of dealing with climate change, and how different levels of agency management view climate change-related issues differently. This study found that many FS employees believe climate change is an important issue; however, they have not done much …

Distribution And Drivers Of A Widespread, Invasive Wetland Grass, Phragmites Australis, In Great Salt Lake Wetlands, Arin Lexine Long

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Non-native invasive plant species can often have negative effects on native ecosystems, such as altered nutrient cycling, decreased habitat for wildlife, and outcompeting native plants. Around the Great Salt Lake (GSL), Utah, the invasive wetland grass Phragmites australis has become abundant in wetlands around the lake. Phragmites is replacing many native wetland plants provide important waterfowl habitat around the GSL. For successful management of Phragmites in GSL wetlands, it is important to know the current distribution of Phragmites, as well as areas that might be vulnerable to future invasion by Phragmites. To do this, we used multispectral aerial …

Ringtail Distribution, Dermatoglyphics, And Diet In Zion National Park, Utah, Adrian Argie Roadman

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Current scientific knowledge of the ringtail (Bassariscus astutus) is limited, thus impeding appropriate management decisions. Ringtails in Zion National Park, Utah, are rarely seen, but are involved in increasing occurrences of negative interactions with park visitors and employees such as food theft and denning in buildings, interactions which are harmful to both parties. To manage this conflict, an update to the general knowledge about the status of the population is required as the only previous study on ringtails in this area was conducted in the 1960s. Using noninvasive techniques provides dependable large-scale population information. I used two noninvasive detection methods …

Use Of A Net Rate Of Energy Intake Model To Examine Differences In Juvenile Steelhead (Oncorhynchus Mykiss) Densities And The Energetic Implications Of Restoration, C. Eric Wall

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Bonneville Power Administration (BPA) Fish and Wildlife Program mitigates for impacts of hydroelectric dams on ESA-listed salmon and steelhead populations in the Columbia River Basin (CRB). Considering the sizable investments in mitigation and the diversity of stream habitats within the CRB, there has been a pointed effort to develop and identify meaningful metrics relating to fish populations and trends in their habitat across the CRB. The Integrated Status and Effectiveness Monitoring Program (ISEMP) was developed in 2003 specifically for this purpose, and is tasked with developing and testing strategies for determining the status and trend of salmonid populations and …

Trophic Status, Energetic Demands, And Factors Affecting Lahontan Cutthroat Trout Distribution In Pyramid Lake, Nevada, Nicholas A. Heredia

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The progression of human development across the landscape has caused declines to both terrestrial and aquatic fauna. Many fishes, specifically native salmonids, have seen reductions in both population size and geographic distribution resulting from reduced habitat, overharvest, and the introduction of non-native predators and competitors. A native North American fish particularly hard hit by these types of actions, Lahontan cutthroat trout, are now limited to less than 10% of their historical habitat, and currently occupy only half of the lakes that they once occupied.

In Pyramid Lake, Nevada, where Lahontan cutthroat trout were once locally extinct, due to overfishing, water …

Nitrogen Cycling In The Rhizosphere Of Cheatgrass And Crested Wheatgrass: Contributions Of Root Exudates And Senescence, Kendalynn A. Morris

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Cheatgrass is an invasive weed that has come to dominate large areas of the western United States. Once an ecosystem has been converted to a cheatgrass monoculture, it is extremely difficult to restore native vegetation. Cheatgrass negatively impacts wildlife and increases wildfire frequency and intensity. Understanding how cheatgrass so effectively invades western ecosystems is essential to turning the tide of invasion. One possible key to cheatgrass’ success is alteration of soil nutrient cycling. The goal of this study is to explore how nitrogen (N) may accumulate in cheatgrass soils via redistribution of N within soil N pools. To accomplish this …

Macroinvertebrate-Driven Nutrient Recycling In Four Large Rivers, Matt A. Schroer

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The cycling of nutrients is a fundamental process in streams and rivers, and scientists are increasingly recognizing the importance of animal communities to nutrient dynamics in these ecosystems. Despite growing evidence that animal excretion (i.e. urine) can supply limiting nutrients to primary producers in small streams, the importance of excretion is uncertain in large rivers. Accordingly, I used three estimation approaches based on past and new excretion rate data to determine nitrogen (N) and phosphorus (P) excretion inputs from insect communities in four large rivers (discharge > 10 cubic meters per second) in North America, and I compared these rates to …

The Ecosystem Role Of Fishes In Lotic Environments, Christopher C. Wheeler

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

It is important for humans to understand how ecosystems work because we depend on them for a variety of products and services. For example, rivers and streams provide fisheries, improved water quality, and recreational opportunities to many individuals. In rivers, interactions among fishes, other stream plants and animals, and the physical river environment can influence continued provision of these valuable services. However, the role played by many freshwater fishes in the provision of these services remains unknown. Additionally, it is important to identify different factors that affect the outcome of interactions involving riverine fishes. To address these issues, I evaluated …

Estimating Baseline Population Parameters Of Urban And Wildland Black Bear Populations Using A Dna-Based Capture-Mark-Recapture Approach In Mono County, California, Jonathan L. Fusaro

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Prior to European settlement, black bear (Ursus americanus) were far less abundant in the state of California. Estimates from statewide harvest data indicate the California black bear population has tripled in the last 3 decades. Bears inhabit areas they formally never occurred (e.g., urban environments) and populations that were at historically low densities are now at high densities. Though harvest data are useful and widely used as an index for black bear population size and population demographics statewide, it lacks the ability to produce precise estimates of abundance and density at local scales or account for the numerous …

Activated Carbon Decreases Invasive Plant Growth By Mediating Plant-Microbe Interactions, Nicole E. Nolan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

To restore lands invaded by dense, non-native vegetation, it may be necessary to develop targeted restoration tools than can remove the mechanism used by these non-native species as a competitive advantage. Activated carbon (AC) is one such tool, with the ability to disrupt the mechanisms of plant to plant communication (allelopathy) and positive plant to microbe communication commonly used by non-native species. Previous studies have shown the success of high concentrations, 1000g/m², of AC in native plant community restoration on a small scale. Here, our goals are twofold: first, to test AC effectiveness in restoring desirable plant communities …

Influence Of Stand Composition On Soil Organic Carbon Stabilization And Biochemistry In Aspen And Conifer Forests Of Utah, Mercedes Román Dobarco

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Social concern about climate change and the elevated level of atmospheric CO2 demands understanding carbon (C) storage and dynamics in forest soils, especially since soils are the largest C reservoir in terrestrial ecosystems, storing two thirds of total C. Quacking aspen (Populus tremuloides Michx.) is an iconic species in western United States that offers multiple ecosystem services, such as habitat and forage for wildlife and cattle, biodiversity, water yield, and C storage. A decline in quaking aspen cover has been documented during the last decades, possibly due to fire suppression and ungulate browsing. A shift from aspen- to conifer-dominated …

Habitat Characteristics Of Mexican Spotted Owls (Strix Occidentalis Lucida) In The Canyonlands Of Southern Utah, Leah R. Lewis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Mexican Spotted Owls are considered a threatened species by the US Fish and Wildlife Service. Therefore, they must be properly managed and protected by federal and state agencies. In this study I explored the habitat characteristics used by Mexican Spotted Owls in the canyonlands region of southern Utah. I spent three summer field seasons (May-September) from 2010 – 2013 locating Mexican Spotted Owl sites and measuring vegetative and geologic features at these sites. I found that canyon width and very tall vegetation influenced Mexican Spotted Owl presence, suggesting that these owls prefer narrow canyons that are vegetated with trees.

Based …

Habitat Assessment Of Two Narrowly Endemic Plant Species, Ozark Spiderwort (Tradescantia Ozarkana) E. S. Anderson And Woods. And Newton's Larkspur (Delphinium Newtonianum) D. M. Moore, Autumn Lynn Coffey Olsen

Graduate Theses and Dissertations

The threat of biodiversity loss is upon us with the onset of climate change and our ever-demanding needs of the Earth's resources for a rapidly growing human population. Species highly vulnerable to loss are those limited in abundance and distribution, or those with reduced genetic diversity. Efforts to actively conserve a sensitive species require effectual data on the probable causes of their vulnerability. Two species of concern, Delphinium newtonianum and Tradescantia ozarkana, are globally rare endemic vascular plant species found only in the Interior Highlands of North America. In an attempt to understand the causes for their endemism, habitat …

Population Genetics And Microbial Communities Of The Gopher Tortoise (Gopherus Polyphemus), Daniel Lyle Gaillard

Dissertations

The gopher tortoise, Gopherus polyphemus, is an endangered species living in the southeastern United States. The recent and drastic decline in tortoise numbers has resulted in a multi-faceted approach to conserve this species. I used a population genetic approach to determine the population structure, genetic diversity and barriers to gene flow at a broad, regional and local scale. Tortoises are divided into five distinct genetic populations at the broad scale, the central populations have the highest levels of genetic diversity and the Tombigbee, Mobile, Apalachicola, Suwannee and St. John’s Rivers appear to be barriers to gene flow. At the regional …

Genotypic Variation In A Foundation Tree (Populus Tremula L.) Explains Community Structure Of Associated Epiphytes, Chantel Davies, Christopher J. Ellis, Glenn R. Iason, Richard A. Ennos

Aspen Bibliography

Community genetics hypothesizes that within a foundation species, the genotype of an individual significantly influences the assemblage of dependent organisms. To assess whether these intra-specific genetic effects are ecologically important, it is required to compare their impact on dependent organisms with that attributable to environmental variation experienced over relevant spatial scales. We assessed bark epiphytes on 27 aspen (Populus tremula L.) genotypes grown in a randomized experimental array at two contrasting sites spanning the environmental conditions from which the aspen genotypes were collected. We found that variation in aspen genotype significantly influenced bark epiphyte community composition, and to the …

Modeling And Monitoring Terrestrial Primary Production In A Changing Global Environment: Toward A Multiscale Synthesis Of Observation And Simulation, Shufen Pan, Hanqin Tian, Shree R. S. Dangal, Zhiyun Ouyang, Bo Tao, Wei Ren, Chaoqun Lu, Steven W. Running

Ecosystem and Conservation Sciences Faculty Publications

There is a critical need to monitor and predict terrestrial primary production, the key indicator of ecosystem functioning, in a changing global environment. Here we provide a brief review of three major approaches to monitoring and predicting terrestrial primary production: (1) ground-based field measurements, (2) satellite-based observations, and (3) process-based ecosystem modelling. Much uncertainty exists in the multi-approach estimations of terrestrial gross primary production (GPP) and net primary production (NPP). To improve the capacity of model simulation and prediction, it is essential to evaluate ecosystem models against ground and satellite-based measurements and observations. As a case, we have shown the …

Mafia Or Farmer? Coevolutionary Consequences Of Retaliation And Farming As Predator Strategies Upon Host Nests By Avian Brood Parasites, Mark E. Hauber

Publications and Research

Many host species of avian brood parasites have evolved to recognize and reject foreign eggs and chicks in the nest. Yet, other hosts accept and care for parasitic young, despite the fitness losses associated with raising non-kin. It has been suggested that nest predation upon host nests by brood parasites could select for coevolved acceptance by hosts, even when their cognitive and motor traits allow for the successful rejection of brood parasitism. Using a modeling approach, I analyzed the conditions that favor the evolution of two predatory strategies by parasites and the acceptance of parasitism in the presence of predatory …

Host Responses To Interspecific Brood Parasitism: A By-Product Of Adaptations To Conspecific Parasitism?, Peter Samas, Mark E. Hauber, Phillip Cassey, Tomáš Grim

Publications and Research

Background: Why have birds evolved the ability to reject eggs? Typically, foreign egg discrimination is interpreted as evidence that interspecific brood parasitism (IP) has selected for the host’s ability to recognize and eliminate foreign eggs. Fewer studies explore the alternative hypothesis that rejection of interspecific eggs is a by-product of host defenses, evolved against conspecific parasitism (CP). We performed a large scale study with replication across taxa (two congeneric Turdus thrushes), space (populations), time (breeding seasons), and treatments (three types of experimental eggs), using a consistent design of egg rejection experiments (n = 1057 nests; including controls), in areas with …

Hypogenic Versus Epigenic Subterranean Ecosystem: Lessons From Eastern Iberian Peninsula, Alberto Sendra, Policarp Garay, Vicente M. Ortuño, José D. Gilgado, Santiago Teruel, Ana Sofia P.S. Reboleira

International Journal of Speleology

Over the last 40 years, hypogenic karst/caves have become well known and hypogene speleogenesis has been used to explain the formation of some of the largest subterranean maze caves. These hypogenic systems involve confined aquifers with upwards flow, responsible for their karstification. Such spaces begun and could be remain isolated from the surface and the contiguous subterranean habitats, including the shallow ones. We studied the invertebrate fauna and the geology/speleogenesis of two recently opened caves from Eastern Iberian Peninsula, which clearly showed features of hypogenic origin. Their scarce faunistic composition, formed by non cave-adapted fauna, is similar to other hypogenic …

Body Size And Species Richness Changes In Glyptosaurinae (Squamata: Anguidae) Through Climatic Transitions Of The North American Cenozoic, Sara Elshafie

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

Poikilothermic vertebrates offer excellent climate proxies based on relationships between environment and measurable variables such as body size and species richness. Relationships of these variables in lizards to environmental transitions over long time scales are poorly understood. Here I show that patterns of body size and species richness in a lizard clade, Glyptosaurinae (Squamata: Anguidae), correspond to known histories of paleotemperatures through the Cenozoic of North America. Glyptosaurines have the richest fossil record among North American Cenozoic lizards and exhibit a wide range of skull sizes. In order to estimate body size for glyptosaurines and other fossil anguids, I collected …

Fossil Crocodilians From The High Guajira Peninsula Of Colombia, And The History Of Neogene Crocodilian Diversity In Tropical South America, Jorge W. Moreno-Bernal

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

The greatest diversity of Cenozoic crocodilians occurred during the Miocene in equatorial South America. However, the origin of this high diversity and its relationship to environmental factors are poorly understood. Most described species come from localities assigned to Laventan (13.8-11.8 Ma) and Huayquerian (9.0-6.8 Ma) South American land mammal ages (SALMAS), whereas the record is sparse in the early to middle Miocene and after the latest Miocene and Pliocene. Field research in the Castilletes (early Miocene-Pliocene) Formation in the High Guajira Peninsula of Colombia provides new fossil data on the origin of Neotropical crocodylian diversity. The Castilletes Formation crops out …

Palynological Evidence For The Paleoenvironmental History Of The Miocene Llanos Basin, Eastern Colombia, Ingrid Carolina Romero Valero

Seton Hall University Dissertations and Theses (ETDs)

The distal Llanos foreland basin was influenced by subsidence events since the Cretaceous until the Pliocene. Although this area has been extensively explored and is considered a potential oil reservoir, few studies of its stratigraphy and depositional environments have been conducted. This basin exhibits a geological section of Miocene age and the core Saltarin-1A, analyzed in this study, is the first and most complete drilling coreof this section with 680 meters. It represents to Carbonera, Leon and Guayabo Formations. Based on palynological data, this work has as its main aims to review the biostratigraphy, to identify the depositional environments, including …

Sink Or Ecological Trap For Tree Swallows In Central Minnesota?, James T. Pathoulas, Nicole E. Noyes

Celebrating Scholarship & Creativity Day (2011-2017)

Background: An ecological trap is typically defined as a low-quality habitat, incapable of sustaining a population, which is preferred over a high quality habitat. Ecological traps may lead to species extinction in populations with 1) strict habitat requirements 2) minimal information about the habitat, and 3) low population size. Tree Swallows (Tachycineta bicolor) meet the former two of these criteria.

Methods: We monitored Tree Swallow (TS) nest boxes (n=90) at two ecologically similar sites A and B with similar occupancy rates. Site B has lower reproductive fitness —suggestive of an ecological trap. Binary logistic regression was used to …

Seasonal Variability As A Source Of Uncertainty In The West Siberian Regional Ch4 Flux Upscaling, A. F. Sabrekov, Benjamin R. K. Runkle, M. V. Glagolev, I E. Kleptsova, S. S. Maksyutov

Biological and Agricultural Engineering Faculty Publications and Presentations

This study compares seasonal and spatial variations in methane fluxes as sources of uncertainty in regional CH4 flux upscaling from the wetlands of West Siberia. The study examined variability in summertime CH4 emissions from boreal peatlands, with a focus on two subtaiga fen sites in the southern part of West Siberia (Novosibirskaya oblast). We measured CH4 flux, water table depth, air and peat temperature, pH and electric conductivity of peat water during three field campaigns in summer 2011 (9–12 July, 26–28 July and 20–21 August). Fluxes were measured with static chambers at sites chosen to represent two of the most …

Ecological Studies Of Wolves On Isle Royale, 2013-2014, John A. Vucetich, Rolf O. Peterson

Ecological Studies of Wolves on Isle Royale

Annual Report 2013-2014

Mapping The Spatial Movements, Behaviors, And Interactions Of Captive Orangutans Using Terrestrial Laser Scanning And Gis, Zachary Joseph Smith

USF Tampa Graduate Theses and Dissertations

Five captive Bornean orangutans (Pongo pygmaeus) were observed in order to better understand their spatial selection, behavior, and interaction with their environment and each other. A newly introduced adult male's interactions with a female group containing two adults, one adolescent, and one juvenile, was documented. Visual observations were performed to document individual behaviors, along with any interactions with silvery langur monkeys, public crowd levels, temperature, and enrichment props. Methods included 15 observation periods, 0.5-3 hours in length each, during which behaviors were verbally and visually confirmed using a HD video camera. Spatial locations of each individual were recorded every three …

Fifth Specimen Of The Nine-Banded Armadillo (Dasypus Novemcinctus) From Nebraska, Keith Geluso, Greg D. Wright, Angelina E. Wright

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The nine-banded armadillo (Dasypus novemcinctus) has moved northward in the Great Plains in the last century, reaching distributional limits in Nebraska for pioneering individuals. Herein, we report on the fifth specimen from Nebraska. A male individual was obtained from Lincoln County representing a new county record for Nebraska and one of the northwestern-most specimens in the United States.

Developing Transmissible Vaccines For Animal Infections: Intrinsically Safe Designs And A Staged Transparent Development Process Will Be Essential, Daniel G. Streiker, Megan E. Griffiths, Rustom Antia, Laura Bergner, Peter Bowman, Maria Vitoria Dos Santos De Moraes, Kevin Esvelt, Mike Famulare, Amy T. Gilbert, Biao He, Michael A. Jarvis, David A. Kennedy, Jennifer Kuzma, Carolyne Nasi,Iyu Wanyonyi, Christopher Remien, Tonie Rocke, Kyle Rosenke, Courtney Schreiner, Justin Sheen, David Simons, Ivet A. Yordanova, James J. Bull, Scott L. Nuismer

United States Department of Agriculture Wildlife Services: Staff Publications

Developing Transmissible Vaccines for Animal Infections: Intrinsically Safe Designs and a Staged Transparent Development Process Will Be Essential

Intrinsically safe, biologically compelling vaccine designs

Pahsed development must incorporate checkpoints and engagement

Staged development with established checkpoints

Wquitable partnerships with international governance

Toward deployment

Workshop organization

Seven proposed commitm ents for the responsible development of transmissible vaccines for infectious disease control in animals

Evolutionary outcomes of vaccine transmission depend on the viral vector and the genetic modifications introduced