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Effects Of Invasion Timing In A One-Dimensional Model Of Competing Species With An Infectious Disease, Eliza Jacops

Williams Honors College, Honors Research Projects

In combining two classes of models, we are able to analyze the dynamics of two species that compete for the same resources while fighting a disease. The native species is the disease host and the invasive species enters their habitat and encounters the disease for the first time. Their natural response is to evolve resistance to the disease, and this can assist in their invasion of the natives' habitat. We find conditions for coexistence of the two species, conditions under which an invasion would succeed and wipe out all native individuals, and conditions under which the invasion fails. We explore …

Amphibian Community Composition And Disease Susceptibility In Ridge-Top Wetlands Of The Daniel Boone National Forest, Audrey Lauren Mctaggart

Online Theses and Dissertations

Ephemeral wetlands are a natural feature of the ridge-top ecosystem in the Daniel Boone National Forest (DBNF) in eastern Kentucky, and support a diverse amphibian assemblage characterized by species with short larval periods. However, hundreds of hydrologically permanent ponds have been constructed along the ridge-top system in the last 50 years. The results of previous studies suggest that constructed ponds act as sinks for some historic ridge-top species because they provide habitat for amphibian predators with long larval periods or aquatic adult stages. My objectives were to determine (1) if natural wetlands differ from constructed wetlands in amphibian community composition, …

Taxonomic Review Of The Wingmite Genus Cameronieta (Acari: Spinturnicidae) On Neotropical Bats, With A New Species From Northeastern Brazil, Juliana C. Almeida, Donald D. Gettinger, Scott Lyell Gardner

Scott L. Gardner Publications

The ectoparasitic mite genus Cameronieta (Acari: Mesostigmata: Spinturnicidae) is endemic to the New World and associated exclusively with bats of the family Mormoopidae. The genus consists of 7 species, 4 broadly distributed through the Caribbean and mainland of North and South America, and 3 species limited to the Greater Antilles archipelago. We present a brief review of the taxonomic history, redefine the genus, and consider some questions that remain concerning the biology and systematics of the group. A new species, Cameronieta almaensis n. sp., is described from the wings of Pteronotus parnellii collected from the Serra das Almas Reserve, in …

Phylogeny And Biogeography Of Species Of Syphacia Seurat, 1916 (Nemata : Oxyurida : Oxyuridae) From The Australian Bioregion, Haylee J. Weaver, Scott Monks, Scott Gardner

Scott L. Gardner Publications

Pinworm nematodes of the genus Syphacia (Nemata : Oxyurida : Oxyuridae) have a global distribution, and infect the caecum of rodents. Within the Australian Bioregion, 17 species of Syphacia infect a range of rodent hosts. Pinworms are traditionally thought to have coevolutionary relationships with their hosts, but the evolution and dispersal of Australian rodents and their helminths remains unclear. This combination of factors allowed us to investigate the likely relationships of Australian Syphacia species based on phylogenetic analysis, overlaid with the ecology and relationships of host species. We conducted a phylogenetic analysis using morphological characters of the species of Syphacia …

Tick-, Mosquito-, And Rodent-Bourne Parasite Sampling Designs For The National Ecological Observatory Network, Yuri Springer, David Hoekman, Pieter T.J. Johnson, Paul A. Duffy, Rebecca A. Hufft, Holly D. Gaff

Biological Sciences Faculty Publications

Parasites and pathogens are increasingly recognized as significant drivers of ecological and evolutionary change in natural ecosystems. Concurrently, transmission of infectious agents among human, livestock, and wildlife populations represents a growing threat to veterinary and human health. In light of these trends and the scarcity of long-term time series data on infection rates among vectors and reservoirs, the National Ecological Observatory Network (NEON) will collect measurements and samples of a suite of tick-, mosquito-, and rodent-borne parasites through a continental-scale surveillance program. Here, we describe the sampling designs for these efforts, highlighting sampling priorities, field and analytical methods, and the …

Fish Pain: Would It Change Current Best Practice In The Real World?, B. K. Diggles

Animal Sentience

Much of the “fish pain debate” relates to how high the bar for pain should be set. The close phylogenetic affinities of teleosts with cartilaginous fishes which appear to lack nociceptors suggests caution should be applied by those who seek to lower the bar, especially given the equivocal and conflicting nature of the experimental data currently available for teleosts. Nevertheless, even if we assume fish “feel pain,” it is difficult to see how current best practice in aquaculture would change. This is because of the need to avoid stress at all stages of the rearing process to optimize health, growth …

Why Animal Welfarism Continues To Fail, Lori Marino

Animal Sentience

Welfarism prioritizes human interests over the needs of nonhuman animals. Despite decades of welfare efforts other animals are mostly worse off than ever before, being subjected to increasingly invasive and harmful treatments, especially in the factory farming and biomedical research areas. A legal rights-based approach is essential in order for other animals to be protected from the varying ethical whims of our species.

Predicting Suitable Habitat Decline Of Midwestern United States Amphibians And Quantifying The Consequence Of Declines Using Pond-Breeding Salamanders, Brock Struecker

Master's Theses

With current declines of vertebrate taxa meeting or exceeding those of historic mass extinction events, there is a growing need to investigate the main drivers of declines. Amphibians are perhaps at greatest risk of global climate change and land-use changes than most other vertebrate classes and also have significant roles in ecosystem processes – combined, this creates a cause for concern. I designed a study that would investigate the effects of current and predicted climate change and land-use changes on amphibians using species distribution models and a field study to identify the potential consequences of amphibian species declines by investigating …

Influence Of Historic Landscapes And Contemporary Species Management On Chesapeake Bay Bald Eagles And Osprey, Catherine B. Viverette

Theses and Dissertations

Influence of historic landscapes and contemporary species management on Chesapeake Bay Bald Eagles and Osprey

Catherine B. Viverette

Co-distributed species with well documented demographic histories can provide good models for testing alternative hypotheses about the impact of evolutionary history, contemporary landscapes, and species management on current distribution and population structure. The Osprey (Pandion haliaetus) and Bald Eagle (Haliaeetus leucocephalus) have been extensively studied, managed and monitored across their North American breeding range, particularly in the Chesapeake Bay. We used a combination of ecological niche modelling, diet reconstruction, and population genetic modeling to understand the role of …

The Contribution Of Marine Aggregate-Associated Bacteria To The Accumulation Of Pathogenic Bacteria In Oysters: An Agent-Based Model, Andrew M. Kramer, J. Evan Ward, Fred C. Dobbs, Melissa L. Pierce

OES Faculty Publications

Bivalves process large volumes of water, leading to their accumulation of bacteria, including potential human pathogens (e.g., vibrios). These bacteria are captured at low efficiencies when freely suspended in the water column, but they also attach to marine aggregates, which are captured with near 100% efficiency. For this reason, and because they are often enriched with heterotrophic bacteria, marine aggregates have been hypothesized to function as important transporters of bacteria into bivalves. The relative contribution of aggregates and unattached bacteria to the accumulation of these cells, however, is unknown. We developed an agent-based model to simulate accumulation of vibrio-type bacteria …

Why Babies Do Not Feel Pain, Or: How Structure-Derived Functional Interpretations Can Go Wrong, Helmut Segner

Animal Sentience

The response to pain involves a non-conscious, reflexive action and a conscious perception. According to Key (2016), consciousness — and thus pain perception — depends on a neuronal correlate that has a “unique neural architecture” as realized in the human cortex. On the basis of the “bioengineering principle that structure determines function,” Key (2016) concludes that animal species such as fish, which lack the requisite cortex-like neuroanatomical structure, are unable to feel pain. This commentary argues that the relationship between brain structure and brain function is less straightforward than suggested in Key’s target article.

Ability Of Skin Bacteria On The Panamanian Frog Species, Craugastor Fitzingeri, To Inhibit The Fungal Pathogen Batrachochytrium Dendrobatidis, Tiffany N. Bridges

Senior Honors Projects, 2010-2019

An emerging infectious disease caused by the fungus Batrachochytrium dendrobatidis (Bd) is leading to global amphibian declines and is threatening the biodiversity of amphibians. Bd susceptibility varies among individuals, species, and populations perhaps due to defensive mechanisms such as symbiotic skin microbes. Some species of amphibians such as Craugastor fitzingeri, a terrestrial frog native to Central America, continue to persist in Bd-positive environments in Panama. My study focused on identifying antifungal bacterial isolates and determining the culturability of the bacterial community on 15 individuals of C. fitzingeri. Morphologically distinct isolates were challenged against Bd in …

Demography And Disease Of The Rare Shrub Buckleya Distichophylla (Santalaceae) In Northeastern Tennessee, William Seth Ratliff

Undergraduate Honors Theses

Piratebush (Buckleya distichophylla (Nutt.) Torr.) is a rare, hemiparasitic shrub with the only extant populations in western North Carolina, northeastern Tennessee, and southwestern Virginia. The preferred natural hosts of piratebush, Carolina and eastern hemlocks, have seen sharp declines over the last decade due to the invasive hemlock woolly adelgid. Virginia pine, another important host of piratebush, is also susceptible to disease, specifically Cronartium appalachianum, a rust fungus for which piratebush is the secondary host. This study described and analyzed current demographic parameters of three Tennessee piratebush populations. Additionally, spatial patterns of disease and demographic characters were analyzed. These …

Plant Toxins Influence Diet Selection And Intestinal Parasites In A Specialist Herbivore, Marcella Rene Fremgen

Boise State University Theses and Dissertations

Herbivores select plants and patches that generally maximize nutrient intake and minimize intake of plant secondary metabolites (PSMs). Protein is important for growth, reproduction and maintenance, but maximizing intake of protein is often limited by concentrations of PSMs that are potentially toxic to herbivores and energetically expensive to process. However, the consequences of ingesting PSM are often dose-dependent. At high doses, PSMs generally have negative physiological effects and are avoided, but some PSMs can be therapeutic against parasites at low doses and could therefore be selected. We used Greater Sage-grouse (Centrocercus urophasianus, hereafter, sage-grouse) to test how PSMs influence …

Environmental Impacts And Carry-Over Effects In Complex Life Cycles: The Role Of Different Life History Stages, Nnaemeka F. Ezeakacha

Dissertations

A challenge faced by organisms with complex life cycles is how environmental factors experienced at an earlier life stage affect the fitness at that stage or are carried over to subsequent life stages. I used container-inhabiting mosquitoes: Aedes albopictus, Aedes aegypti, Aedes triseriatus and Culex quinquefasciatus to study the interactions and performance of life history stages under specific environmental factors. I investigated the effects of egg-desiccation tolerance on egg viability and larval performance in the Aedes mosquitoes. I found increase in egg hatch rate with relative humidity and interaction between relative humidity and egg storage period. Larval performance …

Estudios En Biodiversidad, Volumen I, Griselda Pulido-Flores, Scott Monks, Maritza López-Herrera

Zea E-Books Collection

Este libro es el producto del trabajo colegiado que han desarrollado los profesores, investigadores, y estudiantes que conforman la Red Temática de Calidad Ambiental y Desarrollo Sustentable, a través del macroproyecto “Evaluación del impacto ambiental por actividades antropogénicas: Alternativas de mitigación”. El cual fue apoyado con recursos financieros por parte del Programa para el Desarrollo Profesional Docente (PRODEP), de la Secretaria de Educación Pública (SEP) en México. Las instituciones de educación superior y cuerpos participantes en la red temática son la Universidad Autónoma del Estado de Hidalgo (Uso, Manejo y Conservación de la Biodiversidad UAEHCA- 10; Ciencias Ambientales UAEH-CA-59); Universidad …

Effectiveness Of Stevia Rebaudiana Whole Leaf Extract Against The Various Morphological Forms Of Borrelia Burgdorferi In Vitro, Priyanka Annabel Sugantham Theophilus, Maria J. Victoria, Kayla Socarras, Katherine R. Filush, Khusali Gupta, David F. Luecke, Eva Sapi

Biology and Environmental Science Faculty Publications

Lyme disease is a tick-borne multisystemic disease caused by Borrelia burgdorferi. Administering antibiotics is the primary treat-ment for this disease; however, relapse often occurs when antibiotic treatment is discontinued. The reason for relapse remains un-known, but recent studies suggested the possibilities of the presence of antibiotic resistant Borreliapersister cells and biofilms.In this study, we evaluated the effectiveness of whole leaf Stevia extract against B. burgdorferispirochetes, persisters, and bio-film forms in vitro. The susceptibility of the different forms was evaluated by various quantitative techniques in addition to differ-ent microscopy methods. The effectiveness of Stevia was compared to doxycycline, cefoperazone, daptomycin, and …

Research, Monitoring, Assessment And Development Plan 2015 – 2020, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Odorant Receptor-Based Discovery Of Natural Repellents Of Human Lice, Julien Pelletier, Pingxi Xu, Kyong-Sup Yoon, John M. Clark, Walter S. Leal

SIUE Faculty Research, Scholarship, and Creative Activity

The body louse, Pediculus humanus humanus, is an obligate blood-feeding ectoparasite and an important insect vector that mediates the transmission of diseases to humans. The analysis of the body louse genome revealed a drastic reduction of the chemosensory gene repertoires when compared to other insects, suggesting specific olfactory adaptations to host specialization and permanent parasitic lifestyle. Here, we present for the first time functional evidence for the role of odorant receptors (ORs) in this insect, with the objective to gain insight into the chemical ecology of this vector. We identified seven putative full-length ORs, in addition to the odorant receptor …

A Tail Of Two Phages: Genomic And Functional Analysis Of Listeria Monocytogenes Phages Vb_Lmos_188 And Vb_Lmos_293 Reveal The Receptor-Binding Proteins Involved In Host Specificity, Aidan Casey, Kieran Jordan, Horst Neve, Aidan Coffey, Olivia Mcauliffe

Department of Biological Sciences Publications

The physical characteristics of bacteriophages establish them as viable candidates for downstream development of pathogen detection assays and biocontrol measures. To utilize phages for such purposes, a detailed knowledge of their host interaction mechanisms is a prerequisite. There is currently a wealth of knowledge available concerning Gram-negative phage-host interaction, but little by comparison for Gram-positive phages and Listeria phages in particular. In this research, the lytic spectrum of two recently isolated Listeria monocytogenes phages (vB_LmoS_188 and vB_LmoS_293) was determined, and the genomic basis for their observed serotype 4b/4e host-specificity was investigated using comparative genomics. The late tail genes of these …

Virginia’S Amphibians: Status, Threats And Conservation, Jennifer Sevin, John D. Kleopfer

Virginia Journal of Science

Virginia’s diverse environments support 84 amphibian species (anurans and caudates), making it the third highest state in terms of species richness. However, the Commonwealth matches the global trend in declining amphibian populations with over one-third of its amphibian species in conservation need. The Species of Greatest Conservation Need included in the most recent Virginia Wildlife Action Plan cut across amphibian families and ecoregions. It is challenging to ascertain the exact cause of most of the population declines. In one degree or another, all of the global threats to amphibians exist within Virginia’s borders. While an active research program on amphibians …

Evolutionary And Ecological Characterization Of Mayaro Virus Strains Isolated During An Outbreak, Venezuela, 2010, Albert J. Auguste, Jonathan Liria, Naomi L. Forrester, Dileyvic Giambalvo, Moncada Maria, Kanya C. Long, Dulce Morón, Nuris De Manzione, Robert B. Tesh, Eric S. Halsey, Tadeusz J. Kochel, Rosa Hernandez, Juan-Carlos Navarro, Scott C. Weaver

Faculty Publications

In 2010, an outbreak of febrile illness with arthralgic manifestations was detected at La Estación village, Portuguesa State, Venezuela. The etiologic agent was determined to be Mayaro virus (MAYV), a reemerging South American alphavirus. A total of 77 cases was reported and 19 were confirmed as seropositive. MAYV was isolated from acute-phase serum samples from 6 symptomatic patients. We sequenced 27 complete genomes representing the full spectrum of MAYV genetic diversity, which facilitated detection of a new genotype, designated N. Phylogenetic analysis of genomic sequences indicated that etiologic strains from Venezuela belong to genotype D. Results indicate that MAYV is …

Whole-Genome Sequencing Of Kshv From Zambian Kaposi’S Sarcoma Biopsies Reveals Unique Viral Diversity, Landon N. Olp, Adrien Jeanniard, Clemence Marimo, John T. West, Charles Wood

Nebraska Center for Virology: Faculty Publications

Kaposi’s sarcoma-associated herpesvirus (KSHV) is the etiological agent for Kaposi’s sarcoma (KS). Both KSHV and KS are endemic in sub-Saharan Africa where approximately 84% of global KS cases occur. Nevertheless, whole-genome sequencing of KSHV has only been completed using isolates from Western countries—where KS is not endemic. The lack of whole-genome KSHV sequence data from the most clinically important geographical region, sub-Saharan Africa, represents an important gap as it remains unclear whether genomic diversity has a role on KSHV pathogenesis. We hypothesized that distinct KSHV genotypes might be present in sub-Saharan Africa compared to Western countries. Using a KSHV-targeted enrichment …

Paleoepidemiology Of Intestinal Parasites And Lice In Pre-Columbian South America *, Adauto Araujo, Karl J. Reinhard, Daniela Leles, Luciana Sianto, Alena Iniguez, Martin Fugassa, Berrnardo Arriaza, Nancy Orellana, Luiz Fernando Ferreira

Karl Reinhard Publications

Some human parasites originated in prehominid ancestors in Africa. Nematode species, such as Enterobius vermicularis (pinworm), hookworms and Trichuris trichiura are shared by humans and other close phylogenetic primates (Pan and Gorilla), showing that they infected a common ancestor to this group. When humans migrated from Africa to other continents they carried these parasites wherever climate conditions allowed parasite transmission from host to host. Other parasites, however, were acquired throughout human biological and social evolutive history when new territories were occupied. Paleoparasitology data is a valuable source to recover emergence and disappearance of parasite infections through analysis of archaeological remains. …

Diet And Parasitism At Dust Devil Cave, Karl J. Reinhard, J Richard Ambler, Magdalene Mcguffie

Karl Reinhard Publications

Human parasitism has obvious relationships to group size and composition, mobility, subsistence patterns, and rates of culture change. At their best, human endoparasites may be annoying; at their worst, some can cause death. Thus, an overall view of the parasite load of a prehistoric population can yield insights useful in interpreting past lifeways. With these thoughts in mind, we undertook a study of Desha Complex (6800-4800 B .C.) human feces recovered from Dust Devil Cave in southern Utah.

Identifying The Geographic Origins For The Introduction Of Taeniatherum Caput-Medusae Subsp. Asperum (Medusahead) In The Western United States, Shane Kurtis Skaar

Boise State University Theses and Dissertations

The use of molecular markers can provide insights into the demographic and evolutionary processes that have shaped the genetic diversity of native populations and can be used to identify an invasive species’ geographic origins. Taeniatherum caput-medusae subsp. asperum (medusahead) is a cleistogamous, diploid, annual grass native toEurasia that is now invasive in the western United States (U.S.). Enzyme electrophoresis methods (allozymes) have previously been used to analyze both native and invasive populations of medusahead. Results from these studies suggest that the invasion of medusahead in the westernU.S. stems from multiple introduction events. In addition, 10 of 34 populations from across …

Agave Chewing And Dental Wear: Evidence From Quids, Emily E. Hammerl, Melissa A. Baier, Karl Reinhard

Karl Reinhard Publications

Agave quid chewing is examined as a potential contributing behavior to hunter-gatherer dental wear. It has previously been hypothesized that the contribution of Agave quid chewing to dental wear would be observed in communities wherever phytolith-rich desert succulents were part of subsistence. Previous analysis of coprolites from a prehistoric agricultural site, La Cueva de los Muertos Chiquitos in Durango, Mexico, showed that Agave was a consistent part of a diverse diet. Therefore, quids recovered at this site ought to be useful materials to test the hypothesis that dental wear was related to desert succulent consumption. The quids recovered from the …

Biofilm Formation By Borrelia Burgdorferi Sensu Lato, Venkata Arun Timmaraju, Priyanka A.S. Theophilus, Kunthavai Balasubramanian, Shafiq Shakih, David F. Luecke, Eva Sapi

Biology and Environmental Science Faculty Publications

Bacterial biofilms are microbial communities held together by an extracellular polymeric substance matrix predominantly composed of polysaccharides, proteins and nucleic acids. We had previously shown that Borrelia burgdorferi sensu stricto, the causative organism of Lyme disease in the United States is capable of forming biofilms in vitro. Here, we investigated biofilm formation by B. afzelii and B. garinii, which cause Lyme disease in Europe. Using various histochemistry and microscopy techniques, we show that B. afzelii and B. garinii form biofilms, which resemble biofilms formed by B. burgdorferisensu stricto. High-resolution atomic force microscopy revealed similarities in the …

Increased Harbor Porpoise Mortality In The Pacific Northwest, Usa: Understanding When Higher Levels May Be Normal, Jessica L. Higgins, Stephen A. Raverty, Stephanie A. Norman, John Calambokidis, Joseph K. Gaydos, Deborah A. Duffield, Dyanna M. Lambourn, James M. Rice, Brad Hanson, Kristin Wilkinson, Steven J. Jeffries, Brent Norberg, Lynne Barre

Biology Faculty Publications and Presentations

In 2006, a marked increase in harbor porpoise Phocoena phocoena strandings were reported in the Pacific Northwest of the USA, resulting in the declaration of an unusual mortality event (UME) for Washington and Oregon to facilitate investigation into potential causes. The UME was in place during all of 2006 and 2007, and a total of 114 porpoises stranded during this period. Responders examined 95 porpoises; of these, detailed necropsies were conducted on 75 animals. Here we review the findings related to this event and how these compared to the years immediately before and after the UME. Relatively equal numbers among …

Common Cell Shape Evolution Of Two Nasopharyngeal Pathogens, Frédéric J. Veyrier, Nicolas Biais, Pablo Morales, Nouria Belkacem, Cyril Guilhen, Sylvia Ranjeva, Odile Sismeiro, Gérard Péhau-Arnaudet, Eduardo P. Rocha, Catherine Werts, Muhamed-Kheir Taha, Ivo G. Boneca

Publications and Research

Respiratory infectious diseases are the third cause of worldwide death. The nasopharynx is the portal of entry and the ecological niche of many microorganisms, of which some are pathogenic to humans, such as Neisseria meningitidis and Moraxella catarrhalis. These microbes possess several surface structures that interact with the actors of the innate immune system. In our attempt to understand the past evolution of these bacteria and their adaption to the nasopharynx, we first studied differences in cell wall structure, one of the strongest immune-modulators. We were able to show that a modification of peptidoglycan (PG) composition (increased proportion of pentapeptides) …